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mmu_circDmxl1_3600
Basic information of circular RNA
PanCircBase ID:
mmu_circDmxl1_3600
mm39_Chr. Position ID:
chr18|49995971|50013909|+
Gene name:
Dmxl1
Transcript:
ENSMUST00000180611.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
10,11,12,13,14,15,16,17,18,19
Exon/intron offsets:
0,1043,1405,2178,4900,5070,7968,8665,14778,17830
Genomic length:
17938
Exon/intron sizes in nt:
2,13,25,46,85,12,29,01,00,00,00,00,00,00,000
Flanking exon/introns:
chr18:49992351-49995971|chr18:50013909-50021782
Splice length:
3600
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATATCCCACTTCTTCCATCTATTACATCCTTGAGTTTAAATGAAAATGAAGAGAAATGTGGACCTTTTGTGGTACACTGGTTAAACAATAAAGAGTTACATTTTACTTTGTCCATGGAAGTCTTCTTACAGCAACTTAGAAAAAGTTTTGAACAGCCCTCATCTGAAGCCAGTGTAGAAGATTCTATTCAGGCAGATTTAAAATCTGATGAAGAACTGGATGATGGTGTTGATGATTTAAAAATAAATCATGAAAAGAAGGAATTGGATGAAGACAAAATGTTACCAAGTTCAAGTTTTACACCATTATCTTCAGCCGCCGTCGATCATCAGATTGAAGTGCTTCTGTCTGAATGGAGTAAAAACGCAGACATGCTTTTCAGTATCCATCCCATGGATGGGTCTTTACTAGTTTGGCATGTAGATTGGCTGGATGAATACCAGCCTGGTATGTTTCGTCAAGTTCAGGTGTCCTTTGTTTCCAGAATTCCTGTAGCTTTCCCCACAGGTGATGCAAACTCTCTTTGTAAAAGCATAGTGATGTATGCTTGTACCAAGAACGTTGACTTGGCTATTCAACAAGGAAAACAGAGACCCACTGGCCTCACTCGTTCCACATCAATGCTTATCTCCTCTGCTCACAGTAAATCATCAAATAACTTAAAATTAAGTATTTTTACCCCTAATGTTATGATGATTTCAAAGCATGCTGATGGTTCTTTGAATCAGTGGCTGGTTAGTTTTGCTGAGGAATCTGCTTTTTCTACAGTGCTTAGTATTTCTCACAAATCCAGATATTGTGGTCATCGTTTTCATCTTAATGACTTAGCTTGCCACTCGGTATTACCTTTATTACTGACAACGTCACACCATAATGCATTAAGGACACCAAATGTTGGTAACCAAAAGCAAGCTCATGATGCTGTAAATACTGAAGAATGCTCCTTGGCACAACAAAATAAAAGCAACGTTGATATGGCATTTCAAGATCCCAATGCAATTTACAGTGAGCTTATTCTTTGGAGGGTCGATCCAGTTGGGCCACTATCTTTTTCTGGAGGAGTATCTGAACTTGCCCGGATTAATTCTCTTCATGTTTCTGCCTTTTCCAATGTGGCATGGCTCCCTACTCTCATACCCAGTTACTGTCTAGGTGCATACTGCAACTCTCCTAGTGCATGCTTTGTAGCTAGTGATGGACAATATCTGAGGTTATATGAAGCAGTTATTGATGCCAAGAAACTTTTATATGAACTTTCCAACCCTGAAATTTCTAAATATGTTGGTGAAGTGTTTAACATTGTCAGTCAGCAATCAACAGCCAGACCAGGATGCATTATTGCATTAGATTCTATTACCAAGCTTCATGGCAGAAAAACCCAGTTGCTTCATGTTTTCCAAGAAGACTTCATTTTGAATAACCTTGAGAAGAAACGTCTGGGAGTAGATAACATTTTATTGGATTCAGACAGCTCATGTAATGGATTTTCTGAAAAGTTCTACCTGGTTGTGATAGAGTGTACTGAAGACAACCGTTCACTGTTACGCATGTGGGATTTACACTTAAGGTCAACTCCTGTCTCACTGGATGAAAGAATAGACACAAAAATATCAGAAGCTAGTTGGCTACCAGAAGAACATTATTCCTCTTCTCCAGAGAAGATTCTATCTCCATTTTCACAGAAATTCCAGGCTTGCAGAGCTAATCTCCAGAGTACCAGCAAATTGTCTCTCTTCTCTGAAATGGTATACAGCAAAGAGTTGGATTTGCCAGAAGGAGTTGAGATAATAAGTGTTAAGCCTTCAGCAGGACACCTGAGTTCATCTTCCATATATCCTGTTTGCAGTGCCCCTTATTTATTGGCAACTTCATGCTCAGATGATAAAGTAAGATTTTGGCGATGCAGAGTAACGAATGGAGAATCAGCAACATCAAAGAATGGAAAACTAGATGTTGTGTATGTTTGGGAAGAATGGCCATTACTCATTGAAGATGGACTTGAGAACAATAGTAGTGTTACTGTCCCTGGTAGACCTGTAGAAGTGAGCTGTGCACATACAAGTCGCTTAGCAGTAGCTTATAAACAGCCCACTGGTAATAGTAGATCTCAGGAATTTGTGATGCATGTAAGTATCTTTGAATGTGAGTCTACAGGAGGCTCATGTTGGATCCTTGAGCAGACAATTCATTTAGATGAGTTAAGTACAGTGTTGGATTCTGGCATTAGTATTGATAGCAATTTAGTGGCTTATAATAAACAGGAGACATATTTAGTCAGTAAAGAAAGTATTACATCAAACACAAAACATTTGGTTCACTTAGATTGGATGTCTAGAGAAGATGGTTCTCATATCTTAACTGTAGGGATTGGCTCAAAACTTTTTATGTATGGACCTATGGCTGGCAAGGTACAAGATCAGACTGGAAAGGAAAACCAGGCATTTCCTCTCTGGGACAGTACTAAAATTGTACCTCTTTCTAAATTTGTACTGTTACGAAGTGTGGACTTGGTTTCTTCTGTAGAAGGTGCCCCACCTTTTCCTGTTTCTTTATCATGGGTCCGGGATGGCATCCTTGTGGTAGGAATGGATTGTGAAATGCATGTATATTCCCAATGGCAGCCATCTAATAAACAAGAACCTGTTATATCAGAGTCATACAATGGAAGCACTCCATCTATACTAAGTTTAATAAAACAAAGTAACTCATCAAGTTCTGGGCTACATCCTCCAAAGAAGACTCTGACTCGATCCATGACCAGTCTTGCACAGAAAATCTGTGGAAAGAAAAGTATATTTGACCCCTCAGTGGATATGGAAGATTCCGGTCTCTTTGAAGCCGCTCATGTACTTTCCCCAACTTTACCTCAGTACCATCCCCTGCAGCTTTTGGAACTCATGGATCTTGGCAAAGTTCGGAGAGCCAAGGCCATCTTGTCACATCTTGTCAAATGCATTGCTGGGGAAGTTGTGGCTCTGAATGAAGCTGAATCCAATCATGAGCGCCGCCTTAGATCTCTCACCATCAGTGCTAGTGGAAGCACCACCAGAGACCCGCAGGCATTCAACAAAGCTGACAGCAGAGACTACACAGAGATAGACTCTGTCCCCCCGCTTCCTTTGTACGCCTTACTTGCAGCAGATGATGACAGCTATTGCTCATCTTTGGAAAAAACTGGGAGTGAGAGTTCCTTAAAGAAATCAAAACAGTTATCAAAAGAAAGTTATGATGAGCTTTTTCAGACTTCAGTTCTGATGTCTGATAATCACATGTTAGAAACAGATGAAGAAAATACTCAGCCCAGAGTCATTGACCTTTCACAATACAGTCCAACTTATTTTGGTCCTGAGCATGCTCAGGTTCTTTCTGGCCACTTACTTCATTCTAGCTTACCAGGGCTCACCAGGATGGAGCAGATGTCTTTGATGGCCTTAGCCGATACAATTGCAACTACAAGCACTGATATTGGAGAAAGTAGAGACAGAAATCAAGGTGGGGAAACTCTAGACGAGTGCGGATTAAAGTTTCTTTTGGCTGTTCGACTCCATACCTTTCTTACAACTTCCCTTCCAGCCTACCGAGCTCAACTCCTTCACCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTGTTCGACTCCATACC
59.46
CCAGTGTACCACAAAAGGTCC
58.77
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTGTTCGACTCCATACC
59.46
CCAGTGTACCACAAAAGGTCCA
60.42
149
PCR template sequence:
ACTCTAGACGAGTGCGGATTAAAGTTTCTTTTGGCTGTTCGACTCCATACCTTTCTTACAACTTCCCTTCCAGCCTACCGAGCTCAACTCCTTCACCAAGATATCCCACTTCTTCCATCTATTACATCCTTGAGTTTAAATGAAAATGAAGAGAAATGTGGACCTTTTGTGGTACACTGGTTAAACAATAAAGAGTTACA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
24
Interacting miRNAs (#binding sites)
mmu-miR-494-3p(2), mmu-miR-335-3p(2), mmu-miR-23b-3p(1), mmu-miR-200a-3p(1), mmu-miR-181a-5p(1), mmu-miR-130a-3p(1), mmu-miR-298-5p(1), mmu-miR-23a-3p(1), mmu-miR-128-3p(1), mmu-miR-136-5p(1), mmu-miR-433-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-501-3p(1), mmu-miR-721(1), mmu-miR-370-3p(1), mmu-miR-297a-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-802-5p(1), mmu-miR-410-3p(1), mmu-miR-669d-5p(1), mmu-miR-188-3p(1), mmu-miR-697(1), mmu-miR-3061-5p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCCTTCACCAAGATATCCCACTTCT
siRNA sets
AAGTGGGATATCTTGGTGA, AGAAGTGGGATATCTTGGT, GAAGTGGGATATCTTGGTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDMXL1_3600_ORF_1
0.8529
-0.050510425
1
7086
ORF sequence:
ATGGAAGTCTTCTTACAGCAACTTAGAAAAAGTTTTGAACAGCCCTCATCTGAAGCCAGTGTAGAAGATTCTATTCAGGCAGATTTAAAATCTGATGAAGAACTGGATGATGGTGTTGATGATTTAAAAATAAATCATGAAAAGAAGGAATTGGATGAAGACAAAATGTTACCAAGTTCAAGTTTTACACCATTATCTTCAGCCGCCGTCGATCATCAGATTGAAGTGCTTCTGTCTGAATGGAGTAAAAACGCAGACATGCTTTTCAGTATCCATCCCATGGATGGGTCTTTACTAGTTTGGCATGTAGATTGGCTGGATGAATACCAGCCTGGTATGTTTCGTCAAGTTCAGGTGTCCTTTGTTTCCAGAATTCCTGTAGCTTTCCCCACAGGTGATGCAAACTCTCTTTGTAAAAGCATAGTGATGTATGCTTGTACCAAGAACGTTGACTTGGCTATTCAACAAGGAAAACAGAGACCCACTGGCCTCACTCGTTCCACATCAATGCTTATCTCCTCTGCTCACAGTAAATCATCAAATAACTTAAAATTAAGTATTTTTACCCCTAATGTTATGATGATTTCAAAGCATGCTGATGGTTCTTTGAATCAGTGGCTGGTTAGTTTTGCTGAGGAATCTGCTTTTTCTACAGTGCTTAGTATTTCTCACAAATCCAGATATTGTGGTCATCGTTTTCATCTTAATGACTTAGCTTGCCACTCGGTATTACCTTTATTACTGACAACGTCACACCATAATGCATTAAGGACACCAAATGTTGGTAACCAAAAGCAAGCTCATGATGCTGTAAATACTGAAGAATGCTCCTTGGCACAACAAAATAAAAGCAACGTTGATATGGCATTTCAAGATCCCAATGCAATTTACAGTGAGCTTATTCTTTGGAGGGTCGATCCAGTTGGGCCACTATCTTTTTCTGGAGGAGTATCTGAACTTGCCCGGATTAATTCTCTTCATGTTTCTGCCTTTTCCAATGTGGCATGGCTCCCTACTCTCATACCCAGTTACTGTCTAGGTGCATACTGCAACTCTCCTAGTGCATGCTTTGTAGCTAGTGATGGACAATATCTGAGGTTATATGAAGCAGTTATTGATGCCAAGAAACTTTTATATGAACTTTCCAACCCTGAAATTTCTAAATATGTTGGTGAAGTGTTTAACATTGTCAGTCAGCAATCAACAGCCAGACCAGGATGCATTATTGCATTAGATTCTATTACCAAGCTTCATGGCAGAAAAACCCAGTTGCTTCATGTTTTCCAAGAAGACTTCATTTTGAATAACCTTGAGAAGAAACGTCTGGGAGTAGATAACATTTTATTGGATTCAGACAGCTCATGTAATGGATTTTCTGAAAAGTTCTACCTGGTTGTGATAGAGTGTACTGAAGACAACCGTTCACTGTTACGCATGTGGGATTTACACTTAAGGTCAACTCCTGTCTCACTGGATGAAAGAATAGACACAAAAATATCAGAAGCTAGTTGGCTACCAGAAGAACATTATTCCTCTTCTCCAGAGAAGATTCTATCTCCATTTTCACAGAAATTCCAGGCTTGCAGAGCTAATCTCCAGAGTACCAGCAAATTGTCTCTCTTCTCTGAAATGGTATACAGCAAAGAGTTGGATTTGCCAGAAGGAGTTGAGATAATAAGTGTTAAGCCTTCAGCAGGACACCTGAGTTCATCTTCCATATATCCTGTTTGCAGTGCCCCTTATTTATTGGCAACTTCATGCTCAGATGATAAAGTAAGATTTTGGCGATGCAGAGTAACGAATGGAGAATCAGCAACATCAAAGAATGGAAAACTAGATGTTGTGTATGTTTGGGAAGAATGGCCATTACTCATTGAAGATGGACTTGAGAACAATAGTAGTGTTACTGTCCCTGGTAGACCTGTAGAAGTGAGCTGTGCACATACAAGTCGCTTAGCAGTAGCTTATAAACAGCCCACTGGTAATAGTAGATCTCAGGAATTTGTGATGCATGTAAGTATCTTTGAATGTGAGTCTACAGGAGGCTCATGTTGGATCCTTGAGCAGACAATTCATTTAGATGAGTTAAGTACAGTGTTGGATTCTGGCATTAGTATTGATAGCAATTTAGTGGCTTATAATAAACAGGAGACATATTTAGTCAGTAAAGAAAGTATTACATCAAACACAAAACATTTGGTTCACTTAGATTGGATGTCTAGAGAAGATGGTTCTCATATCTTAACTGTAGGGATTGGCTCAAAACTTTTTATGTATGGACCTATGGCTGGCAAGGTACAAGATCAGACTGGAAAGGAAAACCAGGCATTTCCTCTCTGGGACAGTACTAAAATTGTACCTCTTTCTAAATTTGTACTGTTACGAAGTGTGGACTTGGTTTCTTCTGTAGAAGGTGCCCCACCTTTTCCTGTTTCTTTATCATGGGTCCGGGATGGCATCCTTGTGGTAGGAATGGATTGTGAAATGCATGTATATTCCCAATGGCAGCCATCTAATAAACAAGAACCTGTTATATCAGAGTCATACAATGGAAGCACTCCATCTATACTAAGTTTAATAAAACAAAGTAACTCATCAAGTTCTGGGCTACATCCTCCAAAGAAGACTCTGACTCGATCCATGACCAGTCTTGCACAGAAAATCTGTGGAAAGAAAAGTATATTTGACCCCTCAGTGGATATGGAAGATTCCGGTCTCTTTGAAGCCGCTCATGTACTTTCCCCAACTTTACCTCAGTACCATCCCCTGCAGCTTTTGGAACTCATGGATCTTGGCAAAGTTCGGAGAGCCAAGGCCATCTTGTCACATCTTGTCAAATGCATTGCTGGGGAAGTTGTGGCTCTGAATGAAGCTGAATCCAATCATGAGCGCCGCCTTAGATCTCTCACCATCAGTGCTAGTGGAAGCACCACCAGAGACCCGCAGGCATTCAACAAAGCTGACAGCAGAGACTACACAGAGATAGACTCTGTCCCCCCGCTTCCTTTGTACGCCTTACTTGCAGCAGATGATGACAGCTATTGCTCATCTTTGGAAAAAACTGGGAGTGAGAGTTCCTTAAAGAAATCAAAACAGTTATCAAAAGAAAGTTATGATGAGCTTTTTCAGACTTCAGTTCTGATGTCTGATAATCACATGTTAGAAACAGATGAAGAAAATACTCAGCCCAGAGTCATTGACCTTTCACAATACAGTCCAACTTATTTTGGTCCTGAGCATGCTCAGGTTCTTTCTGGCCACTTACTTCATTCTAGCTTACCAGGGCTCACCAGGATGGAGCAGATGTCTTTGATGGCCTTAGCCGATACAATTGCAACTACAAGCACTGATATTGGAGAAAGTAGAGACAGAAATCAAGGTGGGGAAACTCTAGACGAGTGCGGATTAAAGTTTCTTTTGGCTGTTCGACTCCATACCTTTCTTACAACTTCCCTTCCAGCCTACCGAGCTCAACTCCTTCACCAAGATATCCCACTTCTTCCATCTATTACATCCTTGAGTTTAAATGAAAATGAAGAGAAATGTGGACCTTTTGTGGTACACTGGTTAAACAATAAAGAGTTACATTTTACTTTGTCCATGGAAGTCTTCTTACAGCAACTTAGAAAAAGTTTTGAACAGCCCTCATCTGAAGCCAGTGTAGAAGATTCTATTCAGGCAGATTTAAAATCTGATGAAGAACTGGATGATGGTGTTGATGATTTAAAAATAAATCATGAAAAGAAGGAATTGGATGAAGACAAAATGTTACCAAGTTCAAGTTTTACACCATTATCTTCAGCCGCCGTCGATCATCAGATTGAAGTGCTTCTGTCTGAATGGAGTAAAAACGCAGACATGCTTTTCAGTATCCATCCCATGGATGGGTCTTTACTAGTTTGGCATGTAGATTGGCTGGATGAATACCAGCCTGGTATGTTTCGTCAAGTTCAGGTGTCCTTTGTTTCCAGAATTCCTGTAGCTTTCCCCACAGGTGATGCAAACTCTCTTTGTAAAAGCATAGTGATGTATGCTTGTACCAAGAACGTTGACTTGGCTATTCAACAAGGAAAACAGAGACCCACTGGCCTCACTCGTTCCACATCAATGCTTATCTCCTCTGCTCACAGTAAATCATCAAATAACTTAAAATTAAGTATTTTTACCCCTAATGTTATGATGATTTCAAAGCATGCTGATGGTTCTTTGAATCAGTGGCTGGTTAGTTTTGCTGAGGAATCTGCTTTTTCTACAGTGCTTAGTATTTCTCACAAATCCAGATATTGTGGTCATCGTTTTCATCTTAATGACTTAGCTTGCCACTCGGTATTACCTTTATTACTGACAACGTCACACCATAATGCATTAAGGACACCAAATGTTGGTAACCAAAAGCAAGCTCATGATGCTGTAAATACTGAAGAATGCTCCTTGGCACAACAAAATAAAAGCAACGTTGATATGGCATTTCAAGATCCCAATGCAATTTACAGTGAGCTTATTCTTTGGAGGGTCGATCCAGTTGGGCCACTATCTTTTTCTGGAGGAGTATCTGAACTTGCCCGGATTAATTCTCTTCATGTTTCTGCCTTTTCCAATGTGGCATGGCTCCCTACTCTCATACCCAGTTACTGTCTAGGTGCATACTGCAACTCTCCTAGTGCATGCTTTGTAGCTAGTGATGGACAATATCTGAGGTTATATGAAGCAGTTATTGATGCCAAGAAACTTTTATATGAACTTTCCAACCCTGAAATTTCTAAATATGTTGGTGAAGTGTTTAACATTGTCAGTCAGCAATCAACAGCCAGACCAGGATGCATTATTGCATTAGATTCTATTACCAAGCTTCATGGCAGAAAAACCCAGTTGCTTCATGTTTTCCAAGAAGACTTCATTTTGAATAACCTTGAGAAGAAACGTCTGGGAGTAGATAACATTTTATTGGATTCAGACAGCTCATGTAATGGATTTTCTGAAAAGTTCTACCTGGTTGTGATAGAGTGTACTGAAGACAACCGTTCACTGTTACGCATGTGGGATTTACACTTAAGGTCAACTCCTGTCTCACTGGATGAAAGAATAGACACAAAAATATCAGAAGCTAGTTGGCTACCAGAAGAACATTATTCCTCTTCTCCAGAGAAGATTCTATCTCCATTTTCACAGAAATTCCAGGCTTGCAGAGCTAATCTCCAGAGTACCAGCAAATTGTCTCTCTTCTCTGAAATGGTATACAGCAAAGAGTTGGATTTGCCAGAAGGAGTTGAGATAATAAGTGTTAAGCCTTCAGCAGGACACCTGAGTTCATCTTCCATATATCCTGTTTGCAGTGCCCCTTATTTATTGGCAACTTCATGCTCAGATGATAAAGTAAGATTTTGGCGATGCAGAGTAACGAATGGAGAATCAGCAACATCAAAGAATGGAAAACTAGATGTTGTGTATGTTTGGGAAGAATGGCCATTACTCATTGAAGATGGACTTGAGAACAATAGTAGTGTTACTGTCCCTGGTAGACCTGTAGAAGTGAGCTGTGCACATACAAGTCGCTTAGCAGTAGCTTATAAACAGCCCACTGGTAATAGTAGATCTCAGGAATTTGTGATGCATGTAAGTATCTTTGAATGTGAGTCTACAGGAGGCTCATGTTGGATCCTTGAGCAGACAATTCATTTAGATGAGTTAAGTACAGTGTTGGATTCTGGCATTAGTATTGATAGCAATTTAGTGGCTTATAATAAACAGGAGACATATTTAGTCAGTAAAGAAAGTATTACATCAAACACAAAACATTTGGTTCACTTAGATTGGATGTCTAGAGAAGATGGTTCTCATATCTTAACTGTAGGGATTGGCTCAAAACTTTTTATGTATGGACCTATGGCTGGCAAGGTACAAGATCAGACTGGAAAGGAAAACCAGGCATTTCCTCTCTGGGACAGTACTAAAATTGTACCTCTTTCTAAATTTGTACTGTTACGAAGTGTGGACTTGGTTTCTTCTGTAGAAGGTGCCCCACCTTTTCCTGTTTCTTTATCATGGGTCCGGGATGGCATCCTTGTGGTAGGAATGGATTGTGAAATGCATGTATATTCCCAATGGCAGCCATCTAATAAACAAGAACCTGTTATATCAGAGTCATACAATGGAAGCACTCCATCTATACTAAGTTTAATAAAACAAAGTAACTCATCAAGTTCTGGGCTACATCCTCCAAAGAAGACTCTGACTCGATCCATGACCAGTCTTGCACAGAAAATCTGTGGAAAGAAAAGTATATTTGACCCCTCAGTGGATATGGAAGATTCCGGTCTCTTTGAAGCCGCTCATGTACTTTCCCCAACTTTACCTCAGTACCATCCCCTGCAGCTTTTGGAACTCATGGATCTTGGCAAAGTTCGGAGAGCCAAGGCCATCTTGTCACATCTTGTCAAATGCATTGCTGGGGAAGTTGTGGCTCTGAATGAAGCTGAATCCAATCATGAGCGCCGCCTTAGATCTCTCACCATCAGTGCTAGTGGAAGCACCACCAGAGACCCGCAGGCATTCAACAAAGCTGACAGCAGAGACTACACAGAGATAGACTCTGTCCCCCCGCTTCCTTTGTACGCCTTACTTGCAGCAGATGATGACAGCTATTGCTCATCTTTGGAAAAAACTGGGAGTGAGAGTTCCTTAAAGAAATCAAAACAGTTATCAAAAGAAAGTTATGATGAGCTTTTTCAGACTTCAGTTCTGATGTCTGATAATCACATGTTAGAAACAGATGAAGAAAATACTCAGCCCAGAGTCATTGACCTTTCACAATACAGTCCAACTTATTTTGGTCCTGAGCATGCTCAGGTTCTTTCTGGCCACTTACTTCATTCTAGCTTACCAGGGCTCACCAGGATGGAGCAGATGTCTTTGATGGCCTTAGCCGATACAATTGCAACTACAAGCACTGATATTGGAGAAAGTAGAGACAGAAATCAAGGTGGGGAAACTCTAGACGAGTGCGGATTAAAGTTTCTTTTGGCTGTTCGACTCCATACCTTTCTTACAACTTCCCTTCCAGCCTACCGAGCTCAACTCCTTCACCAA
Peptide sequence:
MEVFLQQLRKSFEQPSSEASVEDSIQADLKSDEELDDGVDDLKINHEKKELDEDKMLPSSSFTPLSSAAVDHQIEVLLSEWSKNADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLCKSIVMYACTKNVDLAIQQGKQRPTGLTRSTSMLISSAHSKSSNNLKLSIFTPNVMMISKHADGSLNQWLVSFAEESAFSTVLSISHKSRYCGHRFHLNDLACHSVLPLLLTTSHHNALRTPNVGNQKQAHDAVNTEECSLAQQNKSNVDMAFQDPNAIYSELILWRVDPVGPLSFSGGVSELARINSLHVSAFSNVAWLPTLIPSYCLGAYCNSPSACFVASDGQYLRLYEAVIDAKKLLYELSNPEISKYVGEVFNIVSQQSTARPGCIIALDSITKLHGRKTQLLHVFQEDFILNNLEKKRLGVDNILLDSDSSCNGFSEKFYLVVIECTEDNRSLLRMWDLHLRSTPVSLDERIDTKISEASWLPEEHYSSSPEKILSPFSQKFQACRANLQSTSKLSLFSEMVYSKELDLPEGVEIISVKPSAGHLSSSSIYPVCSAPYLLATSCSDDKVRFWRCRVTNGESATSKNGKLDVVYVWEEWPLLIEDGLENNSSVTVPGRPVEVSCAHTSRLAVAYKQPTGNSRSQEFVMHVSIFECESTGGSCWILEQTIHLDELSTVLDSGISIDSNLVAYNKQETYLVSKESITSNTKHLVHLDWMSREDGSHILTVGIGSKLFMYGPMAGKVQDQTGKENQAFPLWDSTKIVPLSKFVLLRSVDLVSSVEGAPPFPVSLSWVRDGILVVGMDCEMHVYSQWQPSNKQEPVISESYNGSTPSILSLIKQSNSSSSGLHPPKKTLTRSMTSLAQKICGKKSIFDPSVDMEDSGLFEAAHVLSPTLPQYHPLQLLELMDLGKVRRAKAILSHLVKCIAGEVVALNEAESNHERRLRSLTISASGSTTRDPQAFNKADSRDYTEIDSVPPLPLYALLAADDDSYCSSLEKTGSESSLKKSKQLSKESYDELFQTSVLMSDNHMLETDEENTQPRVIDLSQYSPTYFGPEHAQVLSGHLLHSSLPGLTRMEQMSLMALADTIATTSTDIGESRDRNQGGETLDECGLKFLLAVRLHTFLTTSLPAYRAQLLHQDIPLLPSITSLSLNENEEKCGPFVVHWLNNKELHFTLSMEVFLQQLRKSFEQPSSEASVEDSIQADLKSDEELDDGVDDLKINHEKKELDEDKMLPSSSFTPLSSAAVDHQIEVLLSEWSKNADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLCKSIVMYACTKNVDLAIQQGKQRPTGLTRSTSMLISSAHSKSSNNLKLSIFTPNVMMISKHADGSLNQWLVSFAEESAFSTVLSISHKSRYCGHRFHLNDLACHSVLPLLLTTSHHNALRTPNVGNQKQAHDAVNTEECSLAQQNKSNVDMAFQDPNAIYSELILWRVDPVGPLSFSGGVSELARINSLHVSAFSNVAWLPTLIPSYCLGAYCNSPSACFVASDGQYLRLYEAVIDAKKLLYELSNPEISKYVGEVFNIVSQQSTARPGCIIALDSITKLHGRKTQLLHVFQEDFILNNLEKKRLGVDNILLDSDSSCNGFSEKFYLVVIECTEDNRSLLRMWDLHLRSTPVSLDERIDTKISEASWLPEEHYSSSPEKILSPFSQKFQACRANLQSTSKLSLFSEMVYSKELDLPEGVEIISVKPSAGHLSSSSIYPVCSAPYLLATSCSDDKVRFWRCRVTNGESATSKNGKLDVVYVWEEWPLLIEDGLENNSSVTVPGRPVEVSCAHTSRLAVAYKQPTGNSRSQEFVMHVSIFECESTGGSCWILEQTIHLDELSTVLDSGISIDSNLVAYNKQETYLVSKESITSNTKHLVHLDWMSREDGSHILTVGIGSKLFMYGPMAGKVQDQTGKENQAFPLWDSTKIVPLSKFVLLRSVDLVSSVEGAPPFPVSLSWVRDGILVVGMDCEMHVYSQWQPSNKQEPVISESYNGSTPSILSLIKQSNSSSSGLHPPKKTLTRSMTSLAQKICGKKSIFDPSVDMEDSGLFEAAHVLSPTLPQYHPLQLLELMDLGKVRRAKAILSHLVKCIAGEVVALNEAESNHERRLRSLTISASGSTTRDPQAFNKADSRDYTEIDSVPPLPLYALLAADDDSYCSSLEKTGSESSLKKSKQLSKESYDELFQTSVLMSDNHMLETDEENTQPRVIDLSQYSPTYFGPEHAQVLSGHLLHSSLPGLTRMEQMSLMALADTIATTSTDIGESRDRNQGGETLDECGLKFLLAVRLHTFLTTSLPAYRAQLLHQ
IRESfinder result
IRESfinder score
0.760939732
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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