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mmu_circDmxl1_3600

Basic information of circular RNA
PanCircBase ID:

mmu_circDmxl1_3600

mm39_Chr. Position ID:

chr18|49995971|50013909|+

Gene name:

Dmxl1

Transcript:

ENSMUST00000180611.8

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

10

Exon/intron indexes:

10,11,12,13,14,15,16,17,18,19

Exon/intron offsets:

0,1043,1405,2178,4900,5070,7968,8665,14778,17830

Genomic length:

17938

Exon/intron sizes in nt:

2,13,25,46,85,12,29,01,00,00,00,00,00,00,000

Flanking exon/introns:

chr18:49992351-49995971|chr18:50013909-50021782

Splice length:

3600

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

ATATCCCACTTCTTCCATCTATTACATCCTTGAGTTTAAATGAAAATGAAGAGAAATGTGGACCTTTTGTGGTACACTGGTTAAACAATAAAGAGTTACATTTTACTTTGTCCATGGAAGTCTTCTTACAGCAACTTAGAAAAAGTTTTGAACAGCCCTCATCTGAAGCCAGTGTAGAAGATTCTATTCAGGCAGATTTAAAATCTGATGAAGAACTGGATGATGGTGTTGATGATTTAAAAATAAATCATGAAAAGAAGGAATTGGATGAAGACAAAATGTTACCAAGTTCAAGTTTTACACCATTATCTTCAGCCGCCGTCGATCATCAGATTGAAGTGCTTCTGTCTGAATGGAGTAAAAACGCAGACATGCTTTTCAGTATCCATCCCATGGATGGGTCTTTACTAGTTTGGCATGTAGATTGGCTGGATGAATACCAGCCTGGTATGTTTCGTCAAGTTCAGGTGTCCTTTGTTTCCAGAATTCCTGTAGCTTTCCCCACAGGTGATGCAAACTCTCTTTGTAAAAGCATAGTGATGTATGCTTGTACCAAGAACGTTGACTTGGCTATTCAACAAGGAAAACAGAGACCCACTGGCCTCACTCGTTCCACATCAATGCTTATCTCCTCTGCTCACAGTAAATCATCAAATAACTTAAAATTAAGTATTTTTACCCCTAATGTTATGATGATTTCAAAGCATGCTGATGGTTCTTTGAATCAGTGGCTGGTTAGTTTTGCTGAGGAATCTGCTTTTTCTACAGTGCTTAGTATTTCTCACAAATCCAGATATTGTGGTCATCGTTTTCATCTTAATGACTTAGCTTGCCACTCGGTATTACCTTTATTACTGACAACGTCACACCATAATGCATTAAGGACACCAAATGTTGGTAACCAAAAGCAAGCTCATGATGCTGTAAATACTGAAGAATGCTCCTTGGCACAACAAAATAAAAGCAACGTTGATATGGCATTTCAAGATCCCAATGCAATTTACAGTGAGCTTATTCTTTGGAGGGTCGATCCAGTTGGGCCACTATCTTTTTCTGGAGGAGTATCTGAACTTGCCCGGATTAATTCTCTTCATGTTTCTGCCTTTTCCAATGTGGCATGGCTCCCTACTCTCATACCCAGTTACTGTCTAGGTGCATACTGCAACTCTCCTAGTGCATGCTTTGTAGCTAGTGATGGACAATATCTGAGGTTATATGAAGCAGTTATTGATGCCAAGAAACTTTTATATGAACTTTCCAACCCTGAAATTTCTAAATATGTTGGTGAAGTGTTTAACATTGTCAGTCAGCAATCAACAGCCAGACCAGGATGCATTATTGCATTAGATTCTATTACCAAGCTTCATGGCAGAAAAACCCAGTTGCTTCATGTTTTCCAAGAAGACTTCATTTTGAATAACCTTGAGAAGAAACGTCTGGGAGTAGATAACATTTTATTGGATTCAGACAGCTCATGTAATGGATTTTCTGAAAAGTTCTACCTGGTTGTGATAGAGTGTACTGAAGACAACCGTTCACTGTTACGCATGTGGGATTTACACTTAAGGTCAACTCCTGTCTCACTGGATGAAAGAATAGACACAAAAATATCAGAAGCTAGTTGGCTACCAGAAGAACATTATTCCTCTTCTCCAGAGAAGATTCTATCTCCATTTTCACAGAAATTCCAGGCTTGCAGAGCTAATCTCCAGAGTACCAGCAAATTGTCTCTCTTCTCTGAAATGGTATACAGCAAAGAGTTGGATTTGCCAGAAGGAGTTGAGATAATAAGTGTTAAGCCTTCAGCAGGACACCTGAGTTCATCTTCCATATATCCTGTTTGCAGTGCCCCTTATTTATTGGCAACTTCATGCTCAGATGATAAAGTAAGATTTTGGCGATGCAGAGTAACGAATGGAGAATCAGCAACATCAAAGAATGGAAAACTAGATGTTGTGTATGTTTGGGAAGAATGGCCATTACTCATTGAAGATGGACTTGAGAACAATAGTAGTGTTACTGTCCCTGGTAGACCTGTAGAAGTGAGCTGTGCACATACAAGTCGCTTAGCAGTAGCTTATAAACAGCCCACTGGTAATAGTAGATCTCAGGAATTTGTGATGCATGTAAGTATCTTTGAATGTGAGTCTACAGGAGGCTCATGTTGGATCCTTGAGCAGACAATTCATTTAGATGAGTTAAGTACAGTGTTGGATTCTGGCATTAGTATTGATAGCAATTTAGTGGCTTATAATAAACAGGAGACATATTTAGTCAGTAAAGAAAGTATTACATCAAACACAAAACATTTGGTTCACTTAGATTGGATGTCTAGAGAAGATGGTTCTCATATCTTAACTGTAGGGATTGGCTCAAAACTTTTTATGTATGGACCTATGGCTGGCAAGGTACAAGATCAGACTGGAAAGGAAAACCAGGCATTTCCTCTCTGGGACAGTACTAAAATTGTACCTCTTTCTAAATTTGTACTGTTACGAAGTGTGGACTTGGTTTCTTCTGTAGAAGGTGCCCCACCTTTTCCTGTTTCTTTATCATGGGTCCGGGATGGCATCCTTGTGGTAGGAATGGATTGTGAAATGCATGTATATTCCCAATGGCAGCCATCTAATAAACAAGAACCTGTTATATCAGAGTCATACAATGGAAGCACTCCATCTATACTAAGTTTAATAAAACAAAGTAACTCATCAAGTTCTGGGCTACATCCTCCAAAGAAGACTCTGACTCGATCCATGACCAGTCTTGCACAGAAAATCTGTGGAAAGAAAAGTATATTTGACCCCTCAGTGGATATGGAAGATTCCGGTCTCTTTGAAGCCGCTCATGTACTTTCCCCAACTTTACCTCAGTACCATCCCCTGCAGCTTTTGGAACTCATGGATCTTGGCAAAGTTCGGAGAGCCAAGGCCATCTTGTCACATCTTGTCAAATGCATTGCTGGGGAAGTTGTGGCTCTGAATGAAGCTGAATCCAATCATGAGCGCCGCCTTAGATCTCTCACCATCAGTGCTAGTGGAAGCACCACCAGAGACCCGCAGGCATTCAACAAAGCTGACAGCAGAGACTACACAGAGATAGACTCTGTCCCCCCGCTTCCTTTGTACGCCTTACTTGCAGCAGATGATGACAGCTATTGCTCATCTTTGGAAAAAACTGGGAGTGAGAGTTCCTTAAAGAAATCAAAACAGTTATCAAAAGAAAGTTATGATGAGCTTTTTCAGACTTCAGTTCTGATGTCTGATAATCACATGTTAGAAACAGATGAAGAAAATACTCAGCCCAGAGTCATTGACCTTTCACAATACAGTCCAACTTATTTTGGTCCTGAGCATGCTCAGGTTCTTTCTGGCCACTTACTTCATTCTAGCTTACCAGGGCTCACCAGGATGGAGCAGATGTCTTTGATGGCCTTAGCCGATACAATTGCAACTACAAGCACTGATATTGGAGAAAGTAGAGACAGAAATCAAGGTGGGGAAACTCTAGACGAGTGCGGATTAAAGTTTCTTTTGGCTGTTCGACTCCATACCTTTCTTACAACTTCCCTTCCAGCCTACCGAGCTCAACTCCTTCACCAAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

TGGCTGTTCGACTCCATACC

59.46

CCAGTGTACCACAAAAGGTCC

58.77

149

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

TGGCTGTTCGACTCCATACC

59.46

CCAGTGTACCACAAAAGGTCCA

60.42

149

PCR template sequence:

ACTCTAGACGAGTGCGGATTAAAGTTTCTTTTGGCTGTTCGACTCCATACCTTTCTTACAACTTCCCTTCCAGCCTACCGAGCTCAACTCCTTCACCAAGATATCCCACTTCTTCCATCTATTACATCCTTGAGTTTAAATGAAAATGAAGAGAAATGTGGACCTTTTGTGGTACACTGGTTAAACAATAAAGAGTTACA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

24

Interacting miRNAs (#binding sites)

mmu-miR-494-3p(2), mmu-miR-335-3p(2), mmu-miR-23b-3p(1), mmu-miR-200a-3p(1), mmu-miR-181a-5p(1), mmu-miR-130a-3p(1), mmu-miR-298-5p(1), mmu-miR-23a-3p(1), mmu-miR-128-3p(1), mmu-miR-136-5p(1), mmu-miR-433-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-501-3p(1), mmu-miR-721(1), mmu-miR-370-3p(1), mmu-miR-297a-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-802-5p(1), mmu-miR-410-3p(1), mmu-miR-669d-5p(1), mmu-miR-188-3p(1), mmu-miR-697(1), mmu-miR-3061-5p(1), mmu-miR-338-3p(1)

siRNAs for circular RNA silencing
Junction sequence

CTCCTTCACCAAGATATCCCACTTCT

siRNA sets

AAGTGGGATATCTTGGTGA, AGAAGTGGGATATCTTGGT, GAAGTGGGATATCTTGGTG

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCDMXL1_3600_ORF_1

0.8529

-0.050510425

1

7086

ORF sequence:

ATGGAAGTCTTCTTACAGCAACTTAGAAAAAGTTTTGAACAGCCCTCATCTGAAGCCAGTGTAGAAGATTCTATTCAGGCAGATTTAAAATCTGATGAAGAACTGGATGATGGTGTTGATGATTTAAAAATAAATCATGAAAAGAAGGAATTGGATGAAGACAAAATGTTACCAAGTTCAAGTTTTACACCATTATCTTCAGCCGCCGTCGATCATCAGATTGAAGTGCTTCTGTCTGAATGGAGTAAAAACGCAGACATGCTTTTCAGTATCCATCCCATGGATGGGTCTTTACTAGTTTGGCATGTAGATTGGCTGGATGAATACCAGCCTGGTATGTTTCGTCAAGTTCAGGTGTCCTTTGTTTCCAGAATTCCTGTAGCTTTCCCCACAGGTGATGCAAACTCTCTTTGTAAAAGCATAGTGATGTATGCTTGTACCAAGAACGTTGACTTGGCTATTCAACAAGGAAAACAGAGACCCACTGGCCTCACTCGTTCCACATCAATGCTTATCTCCTCTGCTCACAGTAAATCATCAAATAACTTAAAATTAAGTATTTTTACCCCTAATGTTATGATGATTTCAAAGCATGCTGATGGTTCTTTGAATCAGTGGCTGGTTAGTTTTGCTGAGGAATCTGCTTTTTCTACAGTGCTTAGTATTTCTCACAAATCCAGATATTGTGGTCATCGTTTTCATCTTAATGACTTAGCTTGCCACTCGGTATTACCTTTATTACTGACAACGTCACACCATAATGCATTAAGGACACCAAATGTTGGTAACCAAAAGCAAGCTCATGATGCTGTAAATACTGAAGAATGCTCCTTGGCACAACAAAATAAAAGCAACGTTGATATGGCATTTCAAGATCCCAATGCAATTTACAGTGAGCTTATTCTTTGGAGGGTCGATCCAGTTGGGCCACTATCTTTTTCTGGAGGAGTATCTGAACTTGCCCGGATTAATTCTCTTCATGTTTCTGCCTTTTCCAATGTGGCATGGCTCCCTACTCTCATACCCAGTTACTGTCTAGGTGCATACTGCAACTCTCCTAGTGCATGCTTTGTAGCTAGTGATGGACAATATCTGAGGTTATATGAAGCAGTTATTGATGCCAAGAAACTTTTATATGAACTTTCCAACCCTGAAATTTCTAAATATGTTGGTGAAGTGTTTAACATTGTCAGTCAGCAATCAACAGCCAGACCAGGATGCATTATTGCATTAGATTCTATTACCAAGCTTCATGGCAGAAAAACCCAGTTGCTTCATGTTTTCCAAGAAGACTTCATTTTGAATAACCTTGAGAAGAAACGTCTGGGAGTAGATAACATTTTATTGGATTCAGACAGCTCATGTAATGGATTTTCTGAAAAGTTCTACCTGGTTGTGATAGAGTGTACTGAAGACAACCGTTCACTGTTACGCATGTGGGATTTACACTTAAGGTCAACTCCTGTCTCACTGGATGAAAGAATAGACACAAAAATATCAGAAGCTAGTTGGCTACCAGAAGAACATTATTCCTCTTCTCCAGAGAAGATTCTATCTCCATTTTCACAGAAATTCCAGGCTTGCAGAGCTAATCTCCAGAGTACCAGCAAATTGTCTCTCTTCTCTGAAATGGTATACAGCAAAGAGTTGGATTTGCCAGAAGGAGTTGAGATAATAAGTGTTAAGCCTTCAGCAGGACACCTGAGTTCATCTTCCATATATCCTGTTTGCAGTGCCCCTTATTTATTGGCAACTTCATGCTCAGATGATAAAGTAAGATTTTGGCGATGCAGAGTAACGAATGGAGAATCAGCAACATCAAAGAATGGAAAACTAGATGTTGTGTATGTTTGGGAAGAATGGCCATTACTCATTGAAGATGGACTTGAGAACAATAGTAGTGTTACTGTCCCTGGTAGACCTGTAGAAGTGAGCTGTGCACATACAAGTCGCTTAGCAGTAGCTTATAAACAGCCCACTGGTAATAGTAGATCTCAGGAATTTGTGATGCATGTAAGTATCTTTGAATGTGAGTCTACAGGAGGCTCATGTTGGATCCTTGAGCAGACAATTCATTTAGATGAGTTAAGTACAGTGTTGGATTCTGGCATTAGTATTGATAGCAATTTAGTGGCTTATAATAAACAGGAGACATATTTAGTCAGTAAAGAAAGTATTACATCAAACACAAAACATTTGGTTCACTTAGATTGGATGTCTAGAGAAGATGGTTCTCATATCTTAACTGTAGGGATTGGCTCAAAACTTTTTATGTATGGACCTATGGCTGGCAAGGTACAAGATCAGACTGGAAAGGAAAACCAGGCATTTCCTCTCTGGGACAGTACTAAAATTGTACCTCTTTCTAAATTTGTACTGTTACGAAGTGTGGACTTGGTTTCTTCTGTAGAAGGTGCCCCACCTTTTCCTGTTTCTTTATCATGGGTCCGGGATGGCATCCTTGTGGTAGGAATGGATTGTGAAATGCATGTATATTCCCAATGGCAGCCATCTAATAAACAAGAACCTGTTATATCAGAGTCATACAATGGAAGCACTCCATCTATACTAAGTTTAATAAAACAAAGTAACTCATCAAGTTCTGGGCTACATCCTCCAAAGAAGACTCTGACTCGATCCATGACCAGTCTTGCACAGAAAATCTGTGGAAAGAAAAGTATATTTGACCCCTCAGTGGATATGGAAGATTCCGGTCTCTTTGAAGCCGCTCATGTACTTTCCCCAACTTTACCTCAGTACCATCCCCTGCAGCTTTTGGAACTCATGGATCTTGGCAAAGTTCGGAGAGCCAAGGCCATCTTGTCACATCTTGTCAAATGCATTGCTGGGGAAGTTGTGGCTCTGAATGAAGCTGAATCCAATCATGAGCGCCGCCTTAGATCTCTCACCATCAGTGCTAGTGGAAGCACCACCAGAGACCCGCAGGCATTCAACAAAGCTGACAGCAGAGACTACACAGAGATAGACTCTGTCCCCCCGCTTCCTTTGTACGCCTTACTTGCAGCAGATGATGACAGCTATTGCTCATCTTTGGAAAAAACTGGGAGTGAGAGTTCCTTAAAGAAATCAAAACAGTTATCAAAAGAAAGTTATGATGAGCTTTTTCAGACTTCAGTTCTGATGTCTGATAATCACATGTTAGAAACAGATGAAGAAAATACTCAGCCCAGAGTCATTGACCTTTCACAATACAGTCCAACTTATTTTGGTCCTGAGCATGCTCAGGTTCTTTCTGGCCACTTACTTCATTCTAGCTTACCAGGGCTCACCAGGATGGAGCAGATGTCTTTGATGGCCTTAGCCGATACAATTGCAACTACAAGCACTGATATTGGAGAAAGTAGAGACAGAAATCAAGGTGGGGAAACTCTAGACGAGTGCGGATTAAAGTTTCTTTTGGCTGTTCGACTCCATACCTTTCTTACAACTTCCCTTCCAGCCTACCGAGCTCAACTCCTTCACCAAGATATCCCACTTCTTCCATCTATTACATCCTTGAGTTTAAATGAAAATGAAGAGAAATGTGGACCTTTTGTGGTACACTGGTTAAACAATAAAGAGTTACATTTTACTTTGTCCATGGAAGTCTTCTTACAGCAACTTAGAAAAAGTTTTGAACAGCCCTCATCTGAAGCCAGTGTAGAAGATTCTATTCAGGCAGATTTAAAATCTGATGAAGAACTGGATGATGGTGTTGATGATTTAAAAATAAATCATGAAAAGAAGGAATTGGATGAAGACAAAATGTTACCAAGTTCAAGTTTTACACCATTATCTTCAGCCGCCGTCGATCATCAGATTGAAGTGCTTCTGTCTGAATGGAGTAAAAACGCAGACATGCTTTTCAGTATCCATCCCATGGATGGGTCTTTACTAGTTTGGCATGTAGATTGGCTGGATGAATACCAGCCTGGTATGTTTCGTCAAGTTCAGGTGTCCTTTGTTTCCAGAATTCCTGTAGCTTTCCCCACAGGTGATGCAAACTCTCTTTGTAAAAGCATAGTGATGTATGCTTGTACCAAGAACGTTGACTTGGCTATTCAACAAGGAAAACAGAGACCCACTGGCCTCACTCGTTCCACATCAATGCTTATCTCCTCTGCTCACAGTAAATCATCAAATAACTTAAAATTAAGTATTTTTACCCCTAATGTTATGATGATTTCAAAGCATGCTGATGGTTCTTTGAATCAGTGGCTGGTTAGTTTTGCTGAGGAATCTGCTTTTTCTACAGTGCTTAGTATTTCTCACAAATCCAGATATTGTGGTCATCGTTTTCATCTTAATGACTTAGCTTGCCACTCGGTATTACCTTTATTACTGACAACGTCACACCATAATGCATTAAGGACACCAAATGTTGGTAACCAAAAGCAAGCTCATGATGCTGTAAATACTGAAGAATGCTCCTTGGCACAACAAAATAAAAGCAACGTTGATATGGCATTTCAAGATCCCAATGCAATTTACAGTGAGCTTATTCTTTGGAGGGTCGATCCAGTTGGGCCACTATCTTTTTCTGGAGGAGTATCTGAACTTGCCCGGATTAATTCTCTTCATGTTTCTGCCTTTTCCAATGTGGCATGGCTCCCTACTCTCATACCCAGTTACTGTCTAGGTGCATACTGCAACTCTCCTAGTGCATGCTTTGTAGCTAGTGATGGACAATATCTGAGGTTATATGAAGCAGTTATTGATGCCAAGAAACTTTTATATGAACTTTCCAACCCTGAAATTTCTAAATATGTTGGTGAAGTGTTTAACATTGTCAGTCAGCAATCAACAGCCAGACCAGGATGCATTATTGCATTAGATTCTATTACCAAGCTTCATGGCAGAAAAACCCAGTTGCTTCATGTTTTCCAAGAAGACTTCATTTTGAATAACCTTGAGAAGAAACGTCTGGGAGTAGATAACATTTTATTGGATTCAGACAGCTCATGTAATGGATTTTCTGAAAAGTTCTACCTGGTTGTGATAGAGTGTACTGAAGACAACCGTTCACTGTTACGCATGTGGGATTTACACTTAAGGTCAACTCCTGTCTCACTGGATGAAAGAATAGACACAAAAATATCAGAAGCTAGTTGGCTACCAGAAGAACATTATTCCTCTTCTCCAGAGAAGATTCTATCTCCATTTTCACAGAAATTCCAGGCTTGCAGAGCTAATCTCCAGAGTACCAGCAAATTGTCTCTCTTCTCTGAAATGGTATACAGCAAAGAGTTGGATTTGCCAGAAGGAGTTGAGATAATAAGTGTTAAGCCTTCAGCAGGACACCTGAGTTCATCTTCCATATATCCTGTTTGCAGTGCCCCTTATTTATTGGCAACTTCATGCTCAGATGATAAAGTAAGATTTTGGCGATGCAGAGTAACGAATGGAGAATCAGCAACATCAAAGAATGGAAAACTAGATGTTGTGTATGTTTGGGAAGAATGGCCATTACTCATTGAAGATGGACTTGAGAACAATAGTAGTGTTACTGTCCCTGGTAGACCTGTAGAAGTGAGCTGTGCACATACAAGTCGCTTAGCAGTAGCTTATAAACAGCCCACTGGTAATAGTAGATCTCAGGAATTTGTGATGCATGTAAGTATCTTTGAATGTGAGTCTACAGGAGGCTCATGTTGGATCCTTGAGCAGACAATTCATTTAGATGAGTTAAGTACAGTGTTGGATTCTGGCATTAGTATTGATAGCAATTTAGTGGCTTATAATAAACAGGAGACATATTTAGTCAGTAAAGAAAGTATTACATCAAACACAAAACATTTGGTTCACTTAGATTGGATGTCTAGAGAAGATGGTTCTCATATCTTAACTGTAGGGATTGGCTCAAAACTTTTTATGTATGGACCTATGGCTGGCAAGGTACAAGATCAGACTGGAAAGGAAAACCAGGCATTTCCTCTCTGGGACAGTACTAAAATTGTACCTCTTTCTAAATTTGTACTGTTACGAAGTGTGGACTTGGTTTCTTCTGTAGAAGGTGCCCCACCTTTTCCTGTTTCTTTATCATGGGTCCGGGATGGCATCCTTGTGGTAGGAATGGATTGTGAAATGCATGTATATTCCCAATGGCAGCCATCTAATAAACAAGAACCTGTTATATCAGAGTCATACAATGGAAGCACTCCATCTATACTAAGTTTAATAAAACAAAGTAACTCATCAAGTTCTGGGCTACATCCTCCAAAGAAGACTCTGACTCGATCCATGACCAGTCTTGCACAGAAAATCTGTGGAAAGAAAAGTATATTTGACCCCTCAGTGGATATGGAAGATTCCGGTCTCTTTGAAGCCGCTCATGTACTTTCCCCAACTTTACCTCAGTACCATCCCCTGCAGCTTTTGGAACTCATGGATCTTGGCAAAGTTCGGAGAGCCAAGGCCATCTTGTCACATCTTGTCAAATGCATTGCTGGGGAAGTTGTGGCTCTGAATGAAGCTGAATCCAATCATGAGCGCCGCCTTAGATCTCTCACCATCAGTGCTAGTGGAAGCACCACCAGAGACCCGCAGGCATTCAACAAAGCTGACAGCAGAGACTACACAGAGATAGACTCTGTCCCCCCGCTTCCTTTGTACGCCTTACTTGCAGCAGATGATGACAGCTATTGCTCATCTTTGGAAAAAACTGGGAGTGAGAGTTCCTTAAAGAAATCAAAACAGTTATCAAAAGAAAGTTATGATGAGCTTTTTCAGACTTCAGTTCTGATGTCTGATAATCACATGTTAGAAACAGATGAAGAAAATACTCAGCCCAGAGTCATTGACCTTTCACAATACAGTCCAACTTATTTTGGTCCTGAGCATGCTCAGGTTCTTTCTGGCCACTTACTTCATTCTAGCTTACCAGGGCTCACCAGGATGGAGCAGATGTCTTTGATGGCCTTAGCCGATACAATTGCAACTACAAGCACTGATATTGGAGAAAGTAGAGACAGAAATCAAGGTGGGGAAACTCTAGACGAGTGCGGATTAAAGTTTCTTTTGGCTGTTCGACTCCATACCTTTCTTACAACTTCCCTTCCAGCCTACCGAGCTCAACTCCTTCACCAA

Peptide sequence:

MEVFLQQLRKSFEQPSSEASVEDSIQADLKSDEELDDGVDDLKINHEKKELDEDKMLPSSSFTPLSSAAVDHQIEVLLSEWSKNADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLCKSIVMYACTKNVDLAIQQGKQRPTGLTRSTSMLISSAHSKSSNNLKLSIFTPNVMMISKHADGSLNQWLVSFAEESAFSTVLSISHKSRYCGHRFHLNDLACHSVLPLLLTTSHHNALRTPNVGNQKQAHDAVNTEECSLAQQNKSNVDMAFQDPNAIYSELILWRVDPVGPLSFSGGVSELARINSLHVSAFSNVAWLPTLIPSYCLGAYCNSPSACFVASDGQYLRLYEAVIDAKKLLYELSNPEISKYVGEVFNIVSQQSTARPGCIIALDSITKLHGRKTQLLHVFQEDFILNNLEKKRLGVDNILLDSDSSCNGFSEKFYLVVIECTEDNRSLLRMWDLHLRSTPVSLDERIDTKISEASWLPEEHYSSSPEKILSPFSQKFQACRANLQSTSKLSLFSEMVYSKELDLPEGVEIISVKPSAGHLSSSSIYPVCSAPYLLATSCSDDKVRFWRCRVTNGESATSKNGKLDVVYVWEEWPLLIEDGLENNSSVTVPGRPVEVSCAHTSRLAVAYKQPTGNSRSQEFVMHVSIFECESTGGSCWILEQTIHLDELSTVLDSGISIDSNLVAYNKQETYLVSKESITSNTKHLVHLDWMSREDGSHILTVGIGSKLFMYGPMAGKVQDQTGKENQAFPLWDSTKIVPLSKFVLLRSVDLVSSVEGAPPFPVSLSWVRDGILVVGMDCEMHVYSQWQPSNKQEPVISESYNGSTPSILSLIKQSNSSSSGLHPPKKTLTRSMTSLAQKICGKKSIFDPSVDMEDSGLFEAAHVLSPTLPQYHPLQLLELMDLGKVRRAKAILSHLVKCIAGEVVALNEAESNHERRLRSLTISASGSTTRDPQAFNKADSRDYTEIDSVPPLPLYALLAADDDSYCSSLEKTGSESSLKKSKQLSKESYDELFQTSVLMSDNHMLETDEENTQPRVIDLSQYSPTYFGPEHAQVLSGHLLHSSLPGLTRMEQMSLMALADTIATTSTDIGESRDRNQGGETLDECGLKFLLAVRLHTFLTTSLPAYRAQLLHQDIPLLPSITSLSLNENEEKCGPFVVHWLNNKELHFTLSMEVFLQQLRKSFEQPSSEASVEDSIQADLKSDEELDDGVDDLKINHEKKELDEDKMLPSSSFTPLSSAAVDHQIEVLLSEWSKNADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLCKSIVMYACTKNVDLAIQQGKQRPTGLTRSTSMLISSAHSKSSNNLKLSIFTPNVMMISKHADGSLNQWLVSFAEESAFSTVLSISHKSRYCGHRFHLNDLACHSVLPLLLTTSHHNALRTPNVGNQKQAHDAVNTEECSLAQQNKSNVDMAFQDPNAIYSELILWRVDPVGPLSFSGGVSELARINSLHVSAFSNVAWLPTLIPSYCLGAYCNSPSACFVASDGQYLRLYEAVIDAKKLLYELSNPEISKYVGEVFNIVSQQSTARPGCIIALDSITKLHGRKTQLLHVFQEDFILNNLEKKRLGVDNILLDSDSSCNGFSEKFYLVVIECTEDNRSLLRMWDLHLRSTPVSLDERIDTKISEASWLPEEHYSSSPEKILSPFSQKFQACRANLQSTSKLSLFSEMVYSKELDLPEGVEIISVKPSAGHLSSSSIYPVCSAPYLLATSCSDDKVRFWRCRVTNGESATSKNGKLDVVYVWEEWPLLIEDGLENNSSVTVPGRPVEVSCAHTSRLAVAYKQPTGNSRSQEFVMHVSIFECESTGGSCWILEQTIHLDELSTVLDSGISIDSNLVAYNKQETYLVSKESITSNTKHLVHLDWMSREDGSHILTVGIGSKLFMYGPMAGKVQDQTGKENQAFPLWDSTKIVPLSKFVLLRSVDLVSSVEGAPPFPVSLSWVRDGILVVGMDCEMHVYSQWQPSNKQEPVISESYNGSTPSILSLIKQSNSSSSGLHPPKKTLTRSMTSLAQKICGKKSIFDPSVDMEDSGLFEAAHVLSPTLPQYHPLQLLELMDLGKVRRAKAILSHLVKCIAGEVVALNEAESNHERRLRSLTISASGSTTRDPQAFNKADSRDYTEIDSVPPLPLYALLAADDDSYCSSLEKTGSESSLKKSKQLSKESYDELFQTSVLMSDNHMLETDEENTQPRVIDLSQYSPTYFGPEHAQVLSGHLLHSSLPGLTRMEQMSLMALADTIATTSTDIGESRDRNQGGETLDECGLKFLLAVRLHTFLTTSLPAYRAQLLHQ

IRESfinder result

IRESfinder score

0.760939732

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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