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mmu_circDcun1d4_111
Basic information of circular RNA
PanCircBase ID:
mmu_circDcun1d4_111
mm39_Chr. Position ID:
chr5|73668228|73668509|+
Gene name:
Dcun1d4
Transcript:
ENSMUST00000087181.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
3,4
Exon/intron offsets:
0,241
Genomic length:
281
Exon/intron sizes in nt:
71,40
Flanking exon/introns:
chr5:73638611-73668228|chr5:73668509-73677458
Splice length:
111
Other database IDs:
circAtlas: mmu-Dcun1d4_0007
circBase: hsa_circ_0069715, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_48797
Human Ortholog IDs:
Mature spliced Sequence:
ACTTTCAGCTGAACTCTCATCTCTCAACACTGGCAAGCATTCATAAGATCTACCATACCCTTAACAAGCTGAATCTGACAGAAGACGTTGGCCAAGACGATCACCAAACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGACAGAAGACGTTGGCC
59.97
TGCTTGCCAGTGTTGAGAGA
59.53
77
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGACGTTGGCCAAGACGAT
59.97
TGCTTGCCAGTGTTGAGAGA
59.53
69
PCR template sequence:
ACCCTTAACAAGCTGAATCTGACAGAAGACGTTGGCCAAGACGATCACCAAACAGACTTTCAGCTGAACTCTCATCTCTCAACACTGGCAAGCATTCATAAGATCTACCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-199a-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GATCACCAAACAGACTTTCAGCTGAA
siRNA sets
GAAAGTCTGTTTGGTGATC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.747142221
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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