top of page
mmu_circDap3_431
Basic information of circular RNA
PanCircBase ID:
mmu_circDap3_431
mm39_Chr. Position ID:
chr3|88834317|88836833|-
Gene name:
Dap3
Transcript:
ENSMUST00000090938.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
10,9,8,7
Exon/intron offsets:
0,1198,1436,2385
Genomic length:
2516
Exon/intron sizes in nt:
6,01,59,81,131
Flanking exon/introns:
chr3:88833668-88834317|chr3:88836833-88837782
Splice length:
431
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CTCATCTTTGGGTAAAAAACTGCCGGGAGCTTCTACAGTCCACTCACAACAAACAGCGCTTTGATCAACCCTTAGAGGCCTCTACCTGGCTGAAGAATTTCAAAACTACCAATGAGCGCTTCCTGAGTCAGATAAAAGTTCAAGAGAAGTATGTTTGGAATAAGAGAGAAAGCACTGAGAAAGGCAGTCCTCTGGGAGAAGTTGTTGAACAGGGCCTAACCCGAGTGAGGAATGCCACTGACGCTGTTGGGGTCGTGCTGAAGGAGCTGAAGGCTCAGAGCGCCCTAGGGCTCTTTCACCTCCTGGTGGCTGTGGATGGAGTCAATGCCCTCTGGGGAAGGACCACACTGAAAAAAGAAGATAGAACCTTGATTGCCCCAGAGGAACTCTCCCTTGTCCACAATCTAAGGAAAATGGTGAAAAATGACTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGGAAGGACCACACTGAAA
59.52
GTGGACTGTAGAAGCTCCCG
59.83
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGGAAGGACCACACTGAAA
59.52
AGGGTTGATCAAAGCGCTGT
60.25
170
PCR template sequence:
CTGGGGAAGGACCACACTGAAAAAAGAAGATAGAACCTTGATTGCCCCAGAGGAACTCTCCCTTGTCCACAATCTAAGGAAAATGGTGAAAAATGACTGGCTCATCTTTGGGTAAAAAACTGCCGGGAGCTTCTACAGTCCACTCACAACAAACAGCGCTTTGATCAACCCTTAGAGGCCTCTACCTGGCTGAAGAATTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-93-5p(1), mmu-miR-125b-1-3p(1), mmu-miR-335-3p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GAAAAATGACTGGCTCATCTTTGGGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.45884602
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page