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mmu_circDaglb_127
Basic information of circular RNA
PanCircBase ID:
mmu_circDaglb_127
mm39_Chr. Position ID:
chr5|143469980|143470107|+
Gene name:
Daglb
Transcript:
ENSMUST00000045593.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
127
Exon/intron sizes in nt:
127
Flanking exon/introns:
chr5:143467512-143469980|chr5:143470107-143472902
Splice length:
127
Other database IDs:
circBase: mmu_circ_0012292, CIRCpedia: MMU_CIRCpedia_9349
circBase: hsa_circ_0079361, CIRCpedia: HSA_CIRCpedia_58469
Human Ortholog IDs:
Mature spliced Sequence:
TTGCAGAGCCAGAGACATAGAGTACGATGCAGTGGAAGGTGACCAGCACAACTGCCACTTCGCCTCCATCCTGAAGACCACAGGGCTGCAGTACAGGGATTTCATTCACATAAGCTTTCACGACAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
TCCATCCTGAAGACCACAGGGCTGCAGTACAGGGATTTCATTCACATAAGCTTTCACGACAAGTTGCAGAGCCAGAGACATAGAGTACGATGCAGTGGAAGGTGACCAGCACAACTGCCACTTCGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-217-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTTCACGACAAGTTGCAGAGCCAGA
siRNA sets
TCTGGCTCTGCAACTTGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.646751004
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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