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mmu_circCtps2_455
Basic information of circular RNA
PanCircBase ID:
mmu_circCtps2_455
mm39_Chr. Position ID:
chrX|161705385|161717371|+
Gene name:
Ctps2
Transcript:
ENSMUST00000101095.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
7,8,9,10
Exon/intron offsets:
0,5015,9237,11897
Genomic length:
11986
Exon/intron sizes in nt:
81,152,133,89
Flanking exon/introns:
chrX:161704529-161705385|chrX:161717371-161719706
Splice length:
455
Other database IDs:
circAtlas: hsa-CTPS2_0049, CIRCpedia: HSA_CIRCpedia_65500
Human Ortholog IDs:
Mature spliced Sequence:
ATCGTCTGCCGTAGTTCAACCCCCATTGAGATGGCTGTGAAGGAGAAGATTTCTATGTTTTGTCACGTGAACCCTGAACAGGTCATCTGTATCCATGATGTTTCTTCCATCTACCGAGTGCCTCTCCTTTTGGAGGAGCAAGGTGTGGTTAAATATTTTCAAGAGAGATTGGGCCTGCCCATCAATGATTGTTCAAGTAATTTGCTTTTCAAGTGGAAAGCCATGGCTGACAGGTATGAGAGATTGCAGAAAATATGTTCCATAGCCCTGGTTGGTAAATACACCAAACTCAGGGACTGCTACGCCTCTGTGTTCAAAGCACTGGAACACTCAGCCTTGGCCATCAACCACAAGTTGAACCTGATGTACATAGACTCCATTGATCTGGAGCCAGTCACCAAAGCCGAGGATCCTGTGAAATTCCATGAAGCTTGGCAGAAGCTGTGCTTAGCTGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGTCACCAAAGCCGAGGAT
60.04
CCTGTTCAGGGTTCACGTGA
59.89
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGTCACCAAAGCCGAGGAT
60.04
TGACCTGTTCAGGGTTCACG
59.89
149
PCR template sequence:
TGAACCTGATGTACATAGACTCCATTGATCTGGAGCCAGTCACCAAAGCCGAGGATCCTGTGAAATTCCATGAAGCTTGGCAGAAGCTGTGCTTAGCTGAATCGTCTGCCGTAGTTCAACCCCCATTGAGATGGCTGTGAAGGAGAAGATTTCTATGTTTTGTCACGTGAACCCTGAACAGGTCATCTGTATCCATGATG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-124-3p(1), mmu-miR-9-5p(1), mmu-miR-134-5p(1), mmu-miR-135a-5p(1), mmu-miR-149-5p(1), mmu-miR-494-3p(1), mmu-miR-673-5p(1), mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTGCTTAGCTGAATCGTCTGCCGTA
siRNA sets
CAGACGATTCAGCTAAGCA,GCAGACGATTCAGCTAAGC,AGACGATTCAGCTAAGCAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCTPS2_455_ORF_1
1.0527
0.153787163
0.663208816
465
ORF sequence:
ATGGCTGTGAAGGAGAAGATTTCTATGTTTTGTCACGTGAACCCTGAACAGGTCATCTGTATCCATGATGTTTCTTCCATCTACCGAGTGCCTCTCCTTTTGGAGGAGCAAGGTGTGGTTAAATATTTTCAAGAGAGATTGGGCCTGCCCATCAATGATTGTTCAAGTAATTTGCTTTTCAAGTGGAAAGCCATGGCTGACAGGTATGAGAGATTGCAGAAAATATGTTCCATAGCCCTGGTTGGTAAATACACCAAACTCAGGGACTGCTACGCCTCTGTGTTCAAAGCACTGGAACACTCAGCCTTGGCCATCAACCACAAGTTGAACCTGATGTACATAGACTCCATTGATCTGGAGCCAGTCACCAAAGCCGAGGATCCTGTGAAATTCCATGAAGCTTGGCAGAAGCTGTGCTTAGCTGAATCGTCTGCCGTAGTTCAACCCCCATTGAGATGGCTGTGA
Peptide sequence:
MAVKEKISMFCHVNPEQVICIHDVSSIYRVPLLLEEQGVVKYFQERLGLPINDCSSNLLFKWKAMADRYERLQKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEPVTKAEDPVKFHEAWQKLCLAESSAVVQPPLRWL
IRESfinder result
IRESfinder score
0.71677012
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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