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mmu_circCrybg3_67
Basic information of circular RNA
PanCircBase ID:
mmu_circCrybg3_67
mm39_Chr. Position ID:
chr16|59398160|59398227|-
Gene name:
Crybg3
Transcript:
ENSMUST00000172910.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
67
Exon/intron sizes in nt:
67
Flanking exon/introns:
chr16:59386006-59398160|chr16:59398227-59421107
Splice length:
67
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TGTTGAAAATGAGCCCGTGAGTACAAGTCAGAAAAAGGAAAATGCGCTTTCATCAGAAGCAGTGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AATGCGCTTTCATCAGAAGCA
59.19
TTCTGACTTGTACTCACGGGC
60
60
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAATGCGCTTTCATCAGAAGCA
59.77
TCTGACTTGTACTCACGGGC
59.4
60
PCR template sequence:
AAGGAAAATGCGCTTTCATCAGAAGCAGTGAAGTGTTGAAAATGAGCCCGTGAGTACAAGTCAGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AGAAGCAGTGAAGTGTTGAAAATGAG
siRNA sets
ATTTTCAACACTTCACTGC, TTTTCAACACTTCACTGCT, CATTTTCAACACTTCACTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.573794092
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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