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mmu_circCrybg3_546
Basic information of circular RNA
PanCircBase ID:
mmu_circCrybg3_546
mm39_Chr. Position ID:
chr16|59342446|59350839|-
Gene name:
Crybg3
Transcript:
ENSMUST00000044604.16
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
14,13,12,11,10
Exon/intron offsets:
0,2777,7139,8020,8247
Genomic length:
8393
Exon/intron sizes in nt:
130,110,33,127,146
Flanking exon/introns:
chr16:59326683-59342446|chr16:59350839-59357060
Splice length:
546
Other database IDs:
CIRCpedia: MMU_CIRCpedia_227455, circAtlas: mmu-Crybg3_0006
circAtlas: hsa-CRYBG3_0002, CIRCpedia: HSA_CIRCpedia_105178
Human Ortholog IDs:
Mature spliced Sequence:
AATTTTATAGAATCTTCGATCACACTGTTTGAATCATCTCACCTGGAAAGTGGGAAGTTTATTGACATCACGAATCAGGAAATTTCTGACTTAGAAGAAATCGGCTTTGGCAGCGAGACAAGATCCATTCACGTGAAGAGTGGAGTGTGGGTTGCCTACCACCAGAAGTTCTTCTGCGGCGATCAGTACATTTTAGAGAAAGGAAAATATAAATGCTTTTTTGATTGGGGAGGATCAAGTAATACAATCTTGTCTATCCGACCAATCCAATTGGAACCACTCGGGATAAATGAGCCTACACACTTGCTCAAAGCATTCAGTAAAGCAGGCTTCCAAGGAGAGTGTATCGATTTCGTAAAAGAATGTGCCGACCTGACCTCGTTCACGCCGGCATCCTTTAAGGTTCTCCGTGGCTGCTGGCTCCTCCTGTATTACCAAGAAGACGGTTTCTATCATCAGTGTGTACTGGAAGAGGGCCTCTACGTTGACCTCACTTCCTGCGGCTGCCCATCAGCTAGAATCAGAGCACTCCAGCCCATCGACTAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTGTGTACTGGAAGAGGGCC
60.04
ACTTCCCACTTTCCAGGTGAG
59.58
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTGTGTACTGGAAGAGGGCC
60.04
ACTTCCCACTTTCCAGGTGA
58.48
146
PCR template sequence:
TTTCTATCATCAGTGTGTACTGGAAGAGGGCCTCTACGTTGACCTCACTTCCTGCGGCTGCCCATCAGCTAGAATCAGAGCACTCCAGCCCATCGACTATAATTTTATAGAATCTTCGATCACACTGTTTGAATCATCTCACCTGGAAAGTGGGAAGTTTATTGACATCACGAATCAGGAAATTTCTGACTTAGAAGAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GCCCATCGACTATAATTTTATAGAAT
siRNA sets
TAAAATTATAGTCGATGGG, ATTCTATAAAATTATAGTC, AAAATTATAGTCGATGGGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.704757182
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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