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mmu_circCrebbp_2610
Basic information of circular RNA
PanCircBase ID:
mmu_circCrebbp_2610
mm39_Chr. Position ID:
chr16|3912037|3944477|-
Gene name:
Crebbp
Transcript:
ENSMUST00000023165.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
18
Exon/intron indexes:
25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8
Exon/intron offsets:
0,462,1889,2267,5501,7384,13254,13862,14926,20600,21604,23081,24859,25558,29996,30462,31471,32293
Genomic length:
32440
Exon/intron sizes in nt:
1,47,15,16,87,85,78,18,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr16:3911449-3912037|chr16:3944477-3944733
Splice length:
2610
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TCCACTGATGAATGATGGTTCAAACTCTGGTAACATTGGAAGCCTCAGCACGATACCTACAGCAGCGCCTCCTTCCAGCACTGGTGTTCGAAAAGGCTGGCATGAACATGTGACTCAGGACCTACGGAGTCATCTAGTCCATAAACTCGTTCAAGCCATCTTCCCAACTCCAGACCCTGCAGCTCTGAAAGATCGCCGCATGGAGAACCTGGTTGCCTATGCTAAGAAAGTGGAGGGAGACATGTATGAGTCTGCTAATAGCAGGGATGAATACTATCATTTATTAGCAGAGAAAATCTATAAAATACAAAAAGAACTAGAAGAAAAGCGGAGGTCACGTTTACATAAGCAAGGCATCCTGGGTAACCAGCCAGCTTTACCAGCTTCTGGGGCTCAGCCCCCTGTGATTCCACCAGCCCAGTCTGTAAGACCTCCAAATGGGCCCCTGCCTTTGCCAGTGAATCGCATGCAGGTTTCTCAAGGGATGAATTCATTTAACCCAATGTCCCTGGGAAACGTCCAGTTGCCACAGGCACCCATGGGACCTCGTGCAGCCTCCCCTATGAACCACTCTGTGCAGATGAACAGCATGGCCTCAGTTCCGGGTATGGCCATTTCTCCTTCACGGATGCCTCAGCCTCCAAATATGATGGGCACTCATGCCAACAACATTATGGCCCAGGCACCTACTCAGAACCAGTTTCTGCCACAGAACCAGTTTCCATCATCCAGTGGGGCAATGAGTGTGAACAGTGTGGGCATGGGGCAACCAGCAGCCCAGGCAGGTGTTTCACAGGGTCAGGTACCTGGAGCTGCTCTCCCTAACCCTCTGAACATGCTGGCACCCCAGGCCAGCCAGCTGCCTTGCCCACCAGTGACACAGTCACCATTGCACCCGACTCCACCTCCTGCTTCCACAGCTGCTGGCATGCCCTCTCTCCAACATCCAACGGCACCAGGAATGACCCCTCCTCAGCCAGCAGCTCCCACTCAGCCATCTACTCCTGTGTCATCTGGGCAGACTCCTACCCCAACTCCTGGCTCAGTGCCCAGCGCTGCCCAAACACAGAGTACCCCTACAGTCCAGGCAGCAGCACAGGCTCAGGTGACTCCACAGCCTCAGACCCCAGTGCAGCCACCATCTGTGGCTACTCCTCAGTCATCACAGCAGCAACCAACGCCTGTGCATACTCAGCCTCCTGGCACACCGCTTTCTCAGGCAGCAGCCAGCATTGATAATAGAGTCCCTACTCCCTCCTCTGTGACCAGTGCTGAAACCAGTTCCCAGCAGCCAGGACCCGATGTGCCCATGCTGGAAATGAAGACAGAGGTGCAGACAGATGATGCTGAGCCTGAACCTACTGAATCCAAGGGGGAACCTCGGTCTGAGATGATGGAAGAGGATTTACAAGGTTCTTCCCAAGTAAAAGAAGAGACAGATACGACAGAGCAGAAGTCAGAGCCAATGGAAGTAGAAGAAAAGAAACCTGAAGTAAAAGTGGAAGCTAAAGAGGAAGAAGAGAACAGTTCGAACGACACAGCCTCACAATCAACATCTCCTTCCCAGCCACGCAAAAAAATCTTTAAACCCGAGGAGCTACGCCAGGCACTTATGCCAACTCTAGAAGCACTCTATCGACAGGACCCAGAGTCTTTGCCTTTTCGTCAGCCTGTAGATCCTCAGCTCCTAGGAATCCCAGATTATTTTGATATAGTGAAGAATCCTATGGACCTTTCTACCATCAAACGAAAGCTGGACACAGGGCAATATCAAGAACCCTGGCAGTATGTGGATGATGTCTGGCTTATGTTCAACAATGCGTGGCTATATAATCGTAAAACGTCCCGTGTATATAAATTTTGCAGTAAACTTGCAGAGGTCTTTGAACAAGAAATTGACCCTGTCATGCAGTCTCTTGGATATTGCTGTGGACGAAAGTATGAGTTCTCCCCACAGACTTTGTGCTGTTACGGAAAGCAGCTGTGTACAATTCCTCGTGATGCAGCCTACTACAGCTATCAGAATAGGTATCATTTCTGTGAGAAGTGTTTCACAGAGATCCAGGGCGAGAATGTGACCCTGGGTGACGACCCTTCCCAACCTCAGACGACAATTTCCAAGGATCAATTTGAAAAGAAGAAAAATGATACCTTAGATCCTGAACCTTTTGTTGACTGCAAAGAGTGTGGCCGGAAGATGCATCAGATTTGTGTTCTACACTATGACATCATTTGGCCTTCAGGTTTTGTGTGTGACAACTGTTTGAAGAAAACTGGCAGACCTCGGAAAGAAAACAAATTCAGTGCTAAGAGGCTGCAGACCACACGATTGGGAAACCACTTAGAAGACAGAGTGAATAAGTTTTTGCGGCGCCAGAATCACCCTGAAGCTGGGGAGGTTTTTGTCAGAGTGGTGGCCAGCTCAGACAAGACTGTGGAGGTCAAGCCGGGAATGAAGTCAAGGTTTGTGGATTCTGGAGAGATGTCGGAATCTTTCCCATATCGTACCAAAGCACTCTTTGCTTTTGAGGAGATCGATGGAGTCGATGTGTGCTTTTTTGGGATGCATGTGCAAGAATACGGCTCTGATTGCCCCCCACCAAATACAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCATGTGCAAGAATACGGCT
59.27
GCCTTTTCGAACACCAGTGC
60.32
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCATGTGCAAGAATACGGCT
59.27
CCAGCCTTTTCGAACACCAG
59.41
145
PCR template sequence:
AAGCACTCTTTGCTTTTGAGGAGATCGATGGAGTCGATGTGTGCTTTTTTGGGATGCATGTGCAAGAATACGGCTCTGATTGCCCCCCACCAAATACAAGTCCACTGATGAATGATGGTTCAAACTCTGGTAACATTGGAAGCCTCAGCACGATACCTACAGCAGCGCCTCCTTCCAGCACTGGTGTTCGAAAAGGCTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
26
Interacting miRNAs (#binding sites)
mmu-miR-342-5p(2), mmu-miR-29b-2-5p(2), mmu-miR-23b-3p(1), mmu-miR-140-5p(1), mmu-miR-134-5p(1), mmu-miR-326-3p(1), mmu-miR-23a-3p(1), mmu-miR-185-5p(1), mmu-miR-10b-5p(1), mmu-miR-181b-5p(1), mmu-miR-24-3p(1), mmu-miR-434-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-301b-3p(1), mmu-miR-194-5p(1), mmu-miR-467b-5p(1), mmu-miR-541-5p(1), mmu-miR-362-5p(1), mmu-miR-705(1), mmu-miR-384-3p(1), mmu-miR-377-3p(1), mmu-miR-129-5p(1), mmu-miR-532-5p(1), mmu-miR-484(1), mmu-miR-296-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CACCAAATACAAGTCCACTGATGAAT
siRNA sets
TCAGTGGACTTGTATTTGG, AGTGGACTTGTATTTGGTG, ATCAGTGGACTTGTATTTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCREBBP_2610_ORF_1
1.1811
0.197696651
1
5211
ORF sequence:
ATGAATGATGGTTCAAACTCTGGTAACATTGGAAGCCTCAGCACGATACCTACAGCAGCGCCTCCTTCCAGCACTGGTGTTCGAAAAGGCTGGCATGAACATGTGACTCAGGACCTACGGAGTCATCTAGTCCATAAACTCGTTCAAGCCATCTTCCCAACTCCAGACCCTGCAGCTCTGAAAGATCGCCGCATGGAGAACCTGGTTGCCTATGCTAAGAAAGTGGAGGGAGACATGTATGAGTCTGCTAATAGCAGGGATGAATACTATCATTTATTAGCAGAGAAAATCTATAAAATACAAAAAGAACTAGAAGAAAAGCGGAGGTCACGTTTACATAAGCAAGGCATCCTGGGTAACCAGCCAGCTTTACCAGCTTCTGGGGCTCAGCCCCCTGTGATTCCACCAGCCCAGTCTGTAAGACCTCCAAATGGGCCCCTGCCTTTGCCAGTGAATCGCATGCAGGTTTCTCAAGGGATGAATTCATTTAACCCAATGTCCCTGGGAAACGTCCAGTTGCCACAGGCACCCATGGGACCTCGTGCAGCCTCCCCTATGAACCACTCTGTGCAGATGAACAGCATGGCCTCAGTTCCGGGTATGGCCATTTCTCCTTCACGGATGCCTCAGCCTCCAAATATGATGGGCACTCATGCCAACAACATTATGGCCCAGGCACCTACTCAGAACCAGTTTCTGCCACAGAACCAGTTTCCATCATCCAGTGGGGCAATGAGTGTGAACAGTGTGGGCATGGGGCAACCAGCAGCCCAGGCAGGTGTTTCACAGGGTCAGGTACCTGGAGCTGCTCTCCCTAACCCTCTGAACATGCTGGCACCCCAGGCCAGCCAGCTGCCTTGCCCACCAGTGACACAGTCACCATTGCACCCGACTCCACCTCCTGCTTCCACAGCTGCTGGCATGCCCTCTCTCCAACATCCAACGGCACCAGGAATGACCCCTCCTCAGCCAGCAGCTCCCACTCAGCCATCTACTCCTGTGTCATCTGGGCAGACTCCTACCCCAACTCCTGGCTCAGTGCCCAGCGCTGCCCAAACACAGAGTACCCCTACAGTCCAGGCAGCAGCACAGGCTCAGGTGACTCCACAGCCTCAGACCCCAGTGCAGCCACCATCTGTGGCTACTCCTCAGTCATCACAGCAGCAACCAACGCCTGTGCATACTCAGCCTCCTGGCACACCGCTTTCTCAGGCAGCAGCCAGCATTGATAATAGAGTCCCTACTCCCTCCTCTGTGACCAGTGCTGAAACCAGTTCCCAGCAGCCAGGACCCGATGTGCCCATGCTGGAAATGAAGACAGAGGTGCAGACAGATGATGCTGAGCCTGAACCTACTGAATCCAAGGGGGAACCTCGGTCTGAGATGATGGAAGAGGATTTACAAGGTTCTTCCCAAGTAAAAGAAGAGACAGATACGACAGAGCAGAAGTCAGAGCCAATGGAAGTAGAAGAAAAGAAACCTGAAGTAAAAGTGGAAGCTAAAGAGGAAGAAGAGAACAGTTCGAACGACACAGCCTCACAATCAACATCTCCTTCCCAGCCACGCAAAAAAATCTTTAAACCCGAGGAGCTACGCCAGGCACTTATGCCAACTCTAGAAGCACTCTATCGACAGGACCCAGAGTCTTTGCCTTTTCGTCAGCCTGTAGATCCTCAGCTCCTAGGAATCCCAGATTATTTTGATATAGTGAAGAATCCTATGGACCTTTCTACCATCAAACGAAAGCTGGACACAGGGCAATATCAAGAACCCTGGCAGTATGTGGATGATGTCTGGCTTATGTTCAACAATGCGTGGCTATATAATCGTAAAACGTCCCGTGTATATAAATTTTGCAGTAAACTTGCAGAGGTCTTTGAACAAGAAATTGACCCTGTCATGCAGTCTCTTGGATATTGCTGTGGACGAAAGTATGAGTTCTCCCCACAGACTTTGTGCTGTTACGGAAAGCAGCTGTGTACAATTCCTCGTGATGCAGCCTACTACAGCTATCAGAATAGGTATCATTTCTGTGAGAAGTGTTTCACAGAGATCCAGGGCGAGAATGTGACCCTGGGTGACGACCCTTCCCAACCTCAGACGACAATTTCCAAGGATCAATTTGAAAAGAAGAAAAATGATACCTTAGATCCTGAACCTTTTGTTGACTGCAAAGAGTGTGGCCGGAAGATGCATCAGATTTGTGTTCTACACTATGACATCATTTGGCCTTCAGGTTTTGTGTGTGACAACTGTTTGAAGAAAACTGGCAGACCTCGGAAAGAAAACAAATTCAGTGCTAAGAGGCTGCAGACCACACGATTGGGAAACCACTTAGAAGACAGAGTGAATAAGTTTTTGCGGCGCCAGAATCACCCTGAAGCTGGGGAGGTTTTTGTCAGAGTGGTGGCCAGCTCAGACAAGACTGTGGAGGTCAAGCCGGGAATGAAGTCAAGGTTTGTGGATTCTGGAGAGATGTCGGAATCTTTCCCATATCGTACCAAAGCACTCTTTGCTTTTGAGGAGATCGATGGAGTCGATGTGTGCTTTTTTGGGATGCATGTGCAAGAATACGGCTCTGATTGCCCCCCACCAAATACAAGTCCACTGATGAATGATGGTTCAAACTCTGGTAACATTGGAAGCCTCAGCACGATACCTACAGCAGCGCCTCCTTCCAGCACTGGTGTTCGAAAAGGCTGGCATGAACATGTGACTCAGGACCTACGGAGTCATCTAGTCCATAAACTCGTTCAAGCCATCTTCCCAACTCCAGACCCTGCAGCTCTGAAAGATCGCCGCATGGAGAACCTGGTTGCCTATGCTAAGAAAGTGGAGGGAGACATGTATGAGTCTGCTAATAGCAGGGATGAATACTATCATTTATTAGCAGAGAAAATCTATAAAATACAAAAAGAACTAGAAGAAAAGCGGAGGTCACGTTTACATAAGCAAGGCATCCTGGGTAACCAGCCAGCTTTACCAGCTTCTGGGGCTCAGCCCCCTGTGATTCCACCAGCCCAGTCTGTAAGACCTCCAAATGGGCCCCTGCCTTTGCCAGTGAATCGCATGCAGGTTTCTCAAGGGATGAATTCATTTAACCCAATGTCCCTGGGAAACGTCCAGTTGCCACAGGCACCCATGGGACCTCGTGCAGCCTCCCCTATGAACCACTCTGTGCAGATGAACAGCATGGCCTCAGTTCCGGGTATGGCCATTTCTCCTTCACGGATGCCTCAGCCTCCAAATATGATGGGCACTCATGCCAACAACATTATGGCCCAGGCACCTACTCAGAACCAGTTTCTGCCACAGAACCAGTTTCCATCATCCAGTGGGGCAATGAGTGTGAACAGTGTGGGCATGGGGCAACCAGCAGCCCAGGCAGGTGTTTCACAGGGTCAGGTACCTGGAGCTGCTCTCCCTAACCCTCTGAACATGCTGGCACCCCAGGCCAGCCAGCTGCCTTGCCCACCAGTGACACAGTCACCATTGCACCCGACTCCACCTCCTGCTTCCACAGCTGCTGGCATGCCCTCTCTCCAACATCCAACGGCACCAGGAATGACCCCTCCTCAGCCAGCAGCTCCCACTCAGCCATCTACTCCTGTGTCATCTGGGCAGACTCCTACCCCAACTCCTGGCTCAGTGCCCAGCGCTGCCCAAACACAGAGTACCCCTACAGTCCAGGCAGCAGCACAGGCTCAGGTGACTCCACAGCCTCAGACCCCAGTGCAGCCACCATCTGTGGCTACTCCTCAGTCATCACAGCAGCAACCAACGCCTGTGCATACTCAGCCTCCTGGCACACCGCTTTCTCAGGCAGCAGCCAGCATTGATAATAGAGTCCCTACTCCCTCCTCTGTGACCAGTGCTGAAACCAGTTCCCAGCAGCCAGGACCCGATGTGCCCATGCTGGAAATGAAGACAGAGGTGCAGACAGATGATGCTGAGCCTGAACCTACTGAATCCAAGGGGGAACCTCGGTCTGAGATGATGGAAGAGGATTTACAAGGTTCTTCCCAAGTAAAAGAAGAGACAGATACGACAGAGCAGAAGTCAGAGCCAATGGAAGTAGAAGAAAAGAAACCTGAAGTAAAAGTGGAAGCTAAAGAGGAAGAAGAGAACAGTTCGAACGACACAGCCTCACAATCAACATCTCCTTCCCAGCCACGCAAAAAAATCTTTAAACCCGAGGAGCTACGCCAGGCACTTATGCCAACTCTAGAAGCACTCTATCGACAGGACCCAGAGTCTTTGCCTTTTCGTCAGCCTGTAGATCCTCAGCTCCTAGGAATCCCAGATTATTTTGATATAGTGAAGAATCCTATGGACCTTTCTACCATCAAACGAAAGCTGGACACAGGGCAATATCAAGAACCCTGGCAGTATGTGGATGATGTCTGGCTTATGTTCAACAATGCGTGGCTATATAATCGTAAAACGTCCCGTGTATATAAATTTTGCAGTAAACTTGCAGAGGTCTTTGAACAAGAAATTGACCCTGTCATGCAGTCTCTTGGATATTGCTGTGGACGAAAGTATGAGTTCTCCCCACAGACTTTGTGCTGTTACGGAAAGCAGCTGTGTACAATTCCTCGTGATGCAGCCTACTACAGCTATCAGAATAGGTATCATTTCTGTGAGAAGTGTTTCACAGAGATCCAGGGCGAGAATGTGACCCTGGGTGACGACCCTTCCCAACCTCAGACGACAATTTCCAAGGATCAATTTGAAAAGAAGAAAAATGATACCTTAGATCCTGAACCTTTTGTTGACTGCAAAGAGTGTGGCCGGAAGATGCATCAGATTTGTGTTCTACACTATGACATCATTTGGCCTTCAGGTTTTGTGTGTGACAACTGTTTGAAGAAAACTGGCAGACCTCGGAAAGAAAACAAATTCAGTGCTAAGAGGCTGCAGACCACACGATTGGGAAACCACTTAGAAGACAGAGTGAATAAGTTTTTGCGGCGCCAGAATCACCCTGAAGCTGGGGAGGTTTTTGTCAGAGTGGTGGCCAGCTCAGACAAGACTGTGGAGGTCAAGCCGGGAATGAAGTCAAGGTTTGTGGATTCTGGAGAGATGTCGGAATCTTTCCCATATCGTACCAAAGCACTCTTTGCTTTTGAGGAGATCGATGGAGTCGATGTGTGCTTTTTTGGGATGCATGTGCAAGAATACGGCTCTGATTGCCCCCCACCAAATACA
Peptide sequence:
MNDGSNSGNIGSLSTIPTAAPPSSTGVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPASGAQPPVIPPAQSVRPPNGPLPLPVNRMQVSQGMNSFNPMSLGNVQLPQAPMGPRAASPMNHSVQMNSMASVPGMAISPSRMPQPPNMMGTHANNIMAQAPTQNQFLPQNQFPSSSGAMSVNSVGMGQPAAQAGVSQGQVPGAALPNPLNMLAPQASQLPCPPVTQSPLHPTPPPASTAAGMPSLQHPTAPGMTPPQPAAPTQPSTPVSSGQTPTPTPGSVPSAAQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATPQSSQQQPTPVHTQPPGTPLSQAAASIDNRVPTPSSVTSAETSSQQPGPDVPMLEMKTEVQTDDAEPEPTESKGEPRSEMMEEDLQGSSQVKEETDTTEQKSEPMEVEEKKPEVKVEAKEEEENSSNDTASQSTSPSQPRKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSLGYCCGRKYEFSPQTLCCYGKQLCTIPRDAAYYSYQNRYHFCEKCFTEIQGENVTLGDDPSQPQTTISKDQFEKKKNDTLDPEPFVDCKECGRKMHQICVLHYDIIWPSGFVCDNCLKKTGRPRKENKFSAKRLQTTRLGNHLEDRVNKFLRRQNHPEAGEVFVRVVASSDKTVEVKPGMKSRFVDSGEMSESFPYRTKALFAFEEIDGVDVCFFGMHVQEYGSDCPPPNTSPLMNDGSNSGNIGSLSTIPTAAPPSSTGVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPASGAQPPVIPPAQSVRPPNGPLPLPVNRMQVSQGMNSFNPMSLGNVQLPQAPMGPRAASPMNHSVQMNSMASVPGMAISPSRMPQPPNMMGTHANNIMAQAPTQNQFLPQNQFPSSSGAMSVNSVGMGQPAAQAGVSQGQVPGAALPNPLNMLAPQASQLPCPPVTQSPLHPTPPPASTAAGMPSLQHPTAPGMTPPQPAAPTQPSTPVSSGQTPTPTPGSVPSAAQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATPQSSQQQPTPVHTQPPGTPLSQAAASIDNRVPTPSSVTSAETSSQQPGPDVPMLEMKTEVQTDDAEPEPTESKGEPRSEMMEEDLQGSSQVKEETDTTEQKSEPMEVEEKKPEVKVEAKEEEENSSNDTASQSTSPSQPRKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSLGYCCGRKYEFSPQTLCCYGKQLCTIPRDAAYYSYQNRYHFCEKCFTEIQGENVTLGDDPSQPQTTISKDQFEKKKNDTLDPEPFVDCKECGRKMHQICVLHYDIIWPSGFVCDNCLKKTGRPRKENKFSAKRLQTTRLGNHLEDRVNKFLRRQNHPEAGEVFVRVVASSDKTVEVKPGMKSRFVDSGEMSESFPYRTKALFAFEEIDGVDVCFFGMHVQEYGSDCPPPNT
IRESfinder result
IRESfinder score
0.508018322
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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