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mmu_circCreb3l1_229
Basic information of circular RNA
PanCircBase ID:
mmu_circCreb3l1_229
mm39_Chr. Position ID:
chr2|91832189|91832418|-
Gene name:
Creb3l1
Transcript:
ENSMUST00000028663.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
229
Exon/intron sizes in nt:
229
Flanking exon/introns:
chr2:91825786-91832189|chr2:91832418-91854348
Splice length:
229
Other database IDs:
CIRCpedia: HSA_CIRCpedia_4430
Human Ortholog IDs:
Mature spliced Sequence:
CACTTCCCGGAGCACCTGGACCACTTTGTGGAGAACATGGAGGACTTCTCCAATGACCTGTTCAGCAGTTTCTTTGATGACCCTGTGCTGGACGAGAAGAGTGCTCTGCTGGACATGGAACTGGACTCCCCCGCTCCAGGCATCCAGGCTGAGCACAGCTACTCCCTGAGTGGGGATTCTGCACCCCAGAGCCCCCTTGTGCCTGTCAAGATGGAGGACACCACTCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCACAGCTACTCCCTGAGTG
60.11
GTCCAGCACAGGGTCATCAA
59.96
170
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGAGCACAGCTACTCCCTG
59.82
GTCCAGCACAGGGTCATCAA
59.96
174
PCR template sequence:
CCCGCTCCAGGCATCCAGGCTGAGCACAGCTACTCCCTGAGTGGGGATTCTGCACCCCAGAGCCCCCTTGTGCCTGTCAAGATGGAGGACACCACTCAAGCACTTCCCGGAGCACCTGGACCACTTTGTGGAGAACATGGAGGACTTCTCCAATGACCTGTTCAGCAGTTTCTTTGATGACCCTGTGCTGGACGAGAAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GACACCACTCAAGCACTTCCCGGAGC
siRNA sets
GAAGTGCTTGAGTGGTGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCREB3L1_229_ORF_1
1.1186
0.339571685
0.502899579
249
ORF sequence:
ATGGAGGACTTCTCCAATGACCTGTTCAGCAGTTTCTTTGATGACCCTGTGCTGGACGAGAAGAGTGCTCTGCTGGACATGGAACTGGACTCCCCCGCTCCAGGCATCCAGGCTGAGCACAGCTACTCCCTGAGTGGGGATTCTGCACCCCAGAGCCCCCTTGTGCCTGTCAAGATGGAGGACACCACTCAAGCACTTCCCGGAGCACCTGGACCACTTTGTGGAGAACATGGAGGACTTCTCCAATGA
Peptide sequence:
MEDFSNDLFSSFFDDPVLDEKSALLDMELDSPAPGIQAEHSYSLSGDSAPQSPLVPVKMEDTTQALPGAPGPLCGEHGGLLQ
IRESfinder result
IRESfinder score
0.483187464
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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