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mmu_circCpt1a_295
Basic information of circular RNA
PanCircBase ID:
mmu_circCpt1a_295
mm39_Chr. Position ID:
chr19|3420706|3421677|+
Gene name:
Cpt1a
Transcript:
ENSMUST00000025835.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
11,12
Exon/intron offsets:
0,865
Genomic length:
971
Exon/intron sizes in nt:
1,89,106
Flanking exon/introns:
chr19:3419050-3420706|chr19:3421677-3425092
Splice length:
295
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAGGTGGTTTGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGATAGGCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAACGCAGAGCATTCCTGGG
60.96
AACGTCACGAAGAATGCTGC
59.49
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCATAAACGCAGAGCATTCC
60.27
ATGCTGCCTTTTCTACCGCA
60.32
140
PCR template sequence:
TGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGATAGGCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAGAGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CCATCTGTGGGAGAGTGCCCTGGGCG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.393882361
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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