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mmu_circCorin_841
Basic information of circular RNA
PanCircBase ID:
mmu_circCorin_841
mm39_Chr. Position ID:
chr5|72486954|72500460|-
Gene name:
Corin
Transcript:
ENSMUST00000167460.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
16,15,14,13,12,11
Exon/intron offsets:
0,1199,3056,9349,10229,13274
Genomic length:
13506
Exon/intron sizes in nt:
1,30,11,11,14,10,81,46,000
Flanking exon/introns:
chr5:72476978-72486954|chr5:72500460-72511212
Splice length:
841
Other database IDs:
CIRCpedia: MMU_CIRCpedia_217055, circAtlas: mmu-Corin_0001
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
GTCAATGTGAGCCCATCACTTTGGAACTCTGCATGAATTTGCCCTACAACCATACACATTATCCAAATTACCTTGGCCACAGAACTCAAAAGGAAGCGTCCATCAGCTGGGAGTCATCCCTTTTCCCTGCCCTTGTACAAACCAACTGTTACAAATACCTCATGTTTTTCGCTTGCACCATTTTGGTTCCAAAGTGTGATGTGAATACAGGACAACGCATCCCGCCTTGCAGACTCCTGTGTGAGCACTCCAAAGAGCGCTGTGAGTCTGTTCTGGGAATCGTTGGCCTGCAGTGGCCTGAAGACACCGACTGCAATCAATTTCCAGAGGAAAGTTCAGACAATCAAACTTGCCTCCTGCCCAATGAAGATGTGGAAGAATGCTCTCCGAGTCACTTCAAATGCCGCTCGGGACGATGCGTTCTGGGCTCCAGGAGATGTGACGGCCAGGCTGACTGTGACGACGACAGTGACGAGGAGAACTGTGGTTGTAAAGAGAGAGCTCTTTGGGAATGTCCATTTAATAAGCAATGTCTGAAGCATACATTAATCTGCGATGGGTTTCCAGATTGTCCAGACAGTATGGATGAAAAAAACTGCTCATTTTGCCAAGACAATGAGCTGGAATGTGCCAACCATGAGTGTGTGCCGCGTGACCTTTGGTGCGACGGATGGGTCGACTGCTCAGACAGTTCTGATGAATGGGGCTGTGTGACCCTCTCTAAAAATGGGAACTCCTCCTCATTGCTGACTGTTCACAAATCTGCAAAGGAACACCACGTGTGTGCTGACGGCTGGCGGGAGACGTTGAGTCAGCTGGCCTGCAAGCAGATGGGTTTAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGCAAAGGAACACCACGTG
59.97
TTGAGTTCTGTGGCCAAGGT
59.45
168
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGCAAAGGAACACCACGT
60.11
TTGAGTTCTGTGGCCAAGGT
59.45
169
PCR template sequence:
CATTGCTGACTGTTCACAAATCTGCAAAGGAACACCACGTGTGTGCTGACGGCTGGCGGGAGACGTTGAGTCAGCTGGCCTGCAAGCAGATGGGTTTAGGGTCAATGTGAGCCCATCACTTTGGAACTCTGCATGAATTTGCCCTACAACCATACACATTATCCAAATTACCTTGGCCACAGAACTCAAAAGGAAGCGTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-429-3p(1), mmu-miR-132-3p(1), mmu-miR-96-5p(1), mmu-miR-212-3p(1), mmu-miR-384-3p(1), mmu-miR-342-3p(1), mmu-miR-673-5p(1), mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGATGGGTTTAGGGTCAATGTGAGCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCORIN_841_ORF_1
0.905
0.097738066
0.937633474
819
ORF sequence:
ATGAATTTGCCCTACAACCATACACATTATCCAAATTACCTTGGCCACAGAACTCAAAAGGAAGCGTCCATCAGCTGGGAGTCATCCCTTTTCCCTGCCCTTGTACAAACCAACTGTTACAAATACCTCATGTTTTTCGCTTGCACCATTTTGGTTCCAAAGTGTGATGTGAATACAGGACAACGCATCCCGCCTTGCAGACTCCTGTGTGAGCACTCCAAAGAGCGCTGTGAGTCTGTTCTGGGAATCGTTGGCCTGCAGTGGCCTGAAGACACCGACTGCAATCAATTTCCAGAGGAAAGTTCAGACAATCAAACTTGCCTCCTGCCCAATGAAGATGTGGAAGAATGCTCTCCGAGTCACTTCAAATGCCGCTCGGGACGATGCGTTCTGGGCTCCAGGAGATGTGACGGCCAGGCTGACTGTGACGACGACAGTGACGAGGAGAACTGTGGTTGTAAAGAGAGAGCTCTTTGGGAATGTCCATTTAATAAGCAATGTCTGAAGCATACATTAATCTGCGATGGGTTTCCAGATTGTCCAGACAGTATGGATGAAAAAAACTGCTCATTTTGCCAAGACAATGAGCTGGAATGTGCCAACCATGAGTGTGTGCCGCGTGACCTTTGGTGCGACGGATGGGTCGACTGCTCAGACAGTTCTGATGAATGGGGCTGTGTGACCCTCTCTAAAAATGGGAACTCCTCCTCATTGCTGACTGTTCACAAATCTGCAAAGGAACACCACGTGTGTGCTGACGGCTGGCGGGAGACGTTGAGTCAGCTGGCCTGCAAGCAGATGGGTTTAGGGTCAATGTGA
Peptide sequence:
MNLPYNHTHYPNYLGHRTQKEASISWESSLFPALVQTNCYKYLMFFACTILVPKCDVNTGQRIPPCRLLCEHSKERCESVLGIVGLQWPEDTDCNQFPEESSDNQTCLLPNEDVEECSPSHFKCRSGRCVLGSRRCDGQADCDDDSDEENCGCKERALWECPFNKQCLKHTLICDGFPDCPDSMDEKNCSFCQDNELECANHECVPRDLWCDGWVDCSDSSDEWGCVTLSKNGNSSSLLTVHKSAKEHHVCADGWRETLSQLACKQMGLGSM
IRESfinder result
IRESfinder score
0.490621263
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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