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mmu_circCorin_393
Basic information of circular RNA
PanCircBase ID:
mmu_circCorin_393
mm39_Chr. Position ID:
chr5|72579367|72592785|-
Gene name:
Corin
Transcript:
ENSMUST00000167460.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
5,4
Exon/intron offsets:
0,13210
Genomic length:
13418
Exon/intron sizes in nt:
1,85,208
Flanking exon/introns:
chr5:72529554-72579367|chr5:72592785-72611648
Splice length:
393
Other database IDs:
CIRCpedia: MMU_CIRCpedia_229417, circAtlas: mmu-Corin_0014
circAtlas: hsa-CORIN_0011, CIRCpedia: HSA_CIRCpedia_150925
Human Ortholog IDs:
Mature spliced Sequence:
GCACCTGCATGAACATCACTCACAGCCAGTGTCAAATTCTGCCCTACCACAGCACGTTGGCACCTCTCTTGCCAATTGTCAAAAACATGGACATGGAGAAGTTCCTCAAGTTCTTCACGTACCTCCATCGCCTCAGTTGCTATCAACATATCCTGCTCTTCGGCTGTAGCCTCGCCTTCCCTGAGTGCGTTGTTGATGGCGATGACAGGCATGGTCTTCTACCCTGTAGATCTTTCTGTGAGGCTGCAAAAGAAGGATGCGAATCTGTCCTGGGAATGGTGAACTCCTCCTGGCCGGATTCCCTCAGATGCTCTCAGTTTAGGGACCACACTGAGACTAACAGCAGTGTCAGAAAGAGCTGCTTCTCACTGCAGCAGGAACATGGAAAGCAAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCGGATTCCCTCAGATGCTC
59.97
GTGCTGTGGTAGGGCAGAAT
60.04
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCGGATTCCCTCAGATGCTC
59.97
TGCTGTGGTAGGGCAGAATT
59.3
154
PCR template sequence:
CCGGATTCCCTCAGATGCTCTCAGTTTAGGGACCACACTGAGACTAACAGCAGTGTCAGAAAGAGCTGCTTCTCACTGCAGCAGGAACATGGAAAGCAATGCACCTGCATGAACATCACTCACAGCCAGTGTCAAATTCTGCCCTACCACAGCACGTTGGCACCTCTCTTGCCAATTGTCAAAAACATGGACATGGAGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-370-3p(1), mmu-miR-190b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CATGGAAAGCAATGCACCTGCATGAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCORIN_393_ORF_1
0.7484
0.140814576
0.909953214
777
ORF sequence:
ATGAACATCACTCACAGCCAGTGTCAAATTCTGCCCTACCACAGCACGTTGGCACCTCTCTTGCCAATTGTCAAAAACATGGACATGGAGAAGTTCCTCAAGTTCTTCACGTACCTCCATCGCCTCAGTTGCTATCAACATATCCTGCTCTTCGGCTGTAGCCTCGCCTTCCCTGAGTGCGTTGTTGATGGCGATGACAGGCATGGTCTTCTACCCTGTAGATCTTTCTGTGAGGCTGCAAAAGAAGGATGCGAATCTGTCCTGGGAATGGTGAACTCCTCCTGGCCGGATTCCCTCAGATGCTCTCAGTTTAGGGACCACACTGAGACTAACAGCAGTGTCAGAAAGAGCTGCTTCTCACTGCAGCAGGAACATGGAAAGCAATGCACCTGCATGAACATCACTCACAGCCAGTGTCAAATTCTGCCCTACCACAGCACGTTGGCACCTCTCTTGCCAATTGTCAAAAACATGGACATGGAGAAGTTCCTCAAGTTCTTCACGTACCTCCATCGCCTCAGTTGCTATCAACATATCCTGCTCTTCGGCTGTAGCCTCGCCTTCCCTGAGTGCGTTGTTGATGGCGATGACAGGCATGGTCTTCTACCCTGTAGATCTTTCTGTGAGGCTGCAAAAGAAGGATGCGAATCTGTCCTGGGAATGGTGAACTCCTCCTGGCCGGATTCCCTCAGATGCTCTCAGTTTAGGGACCACACTGAGACTAACAGCAGTGTCAGAAAGAGCTGCTTCTCACTGCAGCAGGAACATGGAAAGCAA
Peptide sequence:
MNITHSQCQILPYHSTLAPLLPIVKNMDMEKFLKFFTYLHRLSCYQHILLFGCSLAFPECVVDGDDRHGLLPCRSFCEAAKEGCESVLGMVNSSWPDSLRCSQFRDHTETNSSVRKSCFSLQQEHGKQCTCMNITHSQCQILPYHSTLAPLLPIVKNMDMEKFLKFFTYLHRLSCYQHILLFGCSLAFPECVVDGDDRHGLLPCRSFCEAAKEGCESVLGMVNSSWPDSLRCSQFRDHTETNSSVRKSCFSLQQEHGKQ
IRESfinder result
IRESfinder score
0.521018173
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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