top of page
mmu_circCltc_2195
Basic information of circular RNA
PanCircBase ID:
mmu_circCltc_2195
mm39_Chr. Position ID:
chr11|86594696|86608887|-
Gene name:
Cltc
Transcript:
ENSMUST00000103186.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
14
Exon/intron indexes:
27,26,25,24,23,22,21,20,19,18,17,16,15,14
Exon/intron offsets:
0,209,769,1017,1275,2102,2796,3181,3599,5079,7470,7976,8710,14027
Genomic length:
14191
Exon/intron sizes in nt:
1,32,15,01,68,10,81,65,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr11:86594600-86594696|chr11:86608887-86610011
Splice length:
2195
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTCTCTTTTATTTTCTGGGGTCCATTGTTAACTTTAGTCAGGACCCAGATGTGCACTTTAAATATATTCAGGCGGCTTGCAAGACTGGGCAAATCAAAGAAGTGGAAAGAATCTGCAGAGAAAGCAACTGCTATGATCCCGAGCGAGTCAAGAATTTTCTCAAGGAGGCAAAACTAACAGATCAGTTGCCACTTATCATTGTCTGTGATCGGTTTGACTTTGTCCATGACCTGGTGCTGTATTTATATAGAAACAATCTTCAGAAGTATATAGAGATATATGTCCAGAAGGTAAATCCAAGTCGACTTCCTGTGGTTATTGGAGGATTGCTGGATGTTGACTGCTCTGAAGATGTCATTAAAAATTTGATTCTTGTTGTGAGAGGTCAATTCTCTACTGATGAGCTTGTTGCTGAAGTCGAGAAAAGAAACAGATTGAAGCTGCTTCTTCCTTGGCTTGAGGCCAGAATTCATGAGGGCTGTGAGGAGCCTGCTACTCACAATGCACTTGCCAAAATATACATTGACAGTAACAACAACCCAGAGAGATTTCTTCGTGAAAACCCTTATTATGACAGTCGTGTTGTTGGGAAGTACTGTGAGAAGAGAGACCCCCATCTGGCTTGTGTTGCTTATGAACGTGGCCAGTGTGACCTGGAGCTCATCAATGTTTGCAATGAGAATTCCCTCTTCAAAAGCCTTTCTCGCTACTTAGTCCGTCGAAAGGATCCAGAATTGTGGGGTAGTGTGCTACTGGAAAGCAATCCATACAGAAGACCGTTAATTGACCAGGTTGTACAGACAGCCTTGTCTGAAACTCAGGACCCAGAAGAAGTGTCAGTAACTGTGAAGGCTTTTATGACAGCAGATCTTCCTAATGAGCTCATTGAACTGCTGGAGAAAATCGTTCTTGATAACTCCGTATTCAGTGAGCACAGGAATCTGCAAAATCTCCTCATCCTCACTGCAATTAAGGCTGACCGAACACGTGTTATGGAGTATATTAACCGCCTGGATAATTATGATGCTCCAGATATTGCCAACATTGCCATCAGCAATGAGCTGTTTGAAGAGGCATTTGCTATTTTCCGGAAGTTTGATGTCAATACTTCAGCAGTGCAGGTGTTGATTGAACATATTGGAAACCTGGATCGTGCATATGAGTTTGCTGAACGCTGCAATGAGCCTGCTGTTTGGAGTCAACTTGCAAAAGCTCAGTTGCAGAAAGGAATGGTGAAGGAAGCCATTGATTCTTACATCAAAGCAGATGATCCTTCATCTTACATGGAAGTTGTCCAGGCTGCCAATGCCAGCGGAAACTGGGAAGAATTGGTGAAGTATTTGCAGATGGCACGCAAGAAGGCTCGAGAGTCCTATGTGGAGACAGAATTGATATTTGCACTGGCTAAAACAAACCGCCTTGCAGAATTAGAAGAGTTCATCAATGGGCCAAATAATGCTCATATTCAGCAAGTTGGTGACCGTTGTTATGATGAAAAAATGTATGATGCTGCTAAGTTGTTGTACAATAATGTTTCTAACTTTGGACGCTTGGCATCTACCCTTGTTCACCTTGGCGAGTATCAGGCAGCAGTTGATGGTGCCAGAAAAGCTAATAGTACTCGAACATGGAAAGAGGTCTGCTTTGCCTGTGTAGATGGGAAAGAGTTCCGCCTTGCTCAGATGTGTGGACTCCATATTGTGGTGCATGCAGATGAATTAGAGGAGCTTATCAACTACTATCAGGATCGTGGATATTTTGAAGAACTCATCACCATGTTGGAGGCAGCCTTGGGACTGGAGCGAGCTCACATGGGAATGTTCACAGAGCTAGCTATTTTGTATTCTAAATTCAAGCCACAGAAAATGAGAGAACACCTGGAGTTGTTCTGGTCGAGAGTGAATATTCCTAAGGTGCTGAGAGCTGCAGAACAGGCTCATCTCTGGGCAGAGCTGGTGTTTCTGTATGACAAGTACGAAGAGTATGACAATGCCATCATTACCATGATGAATCACCCCACCGATGCATGGAAGGAAGGGCAGTTCAAAGACATCATCACCAAGGTGGCTAATGTGGAACTGTACTACAAAGCAATCCAGTTCTACTTAGAATTCAAGCCTTTGTTGTTAAATGACTTGCTCATGGTGCTGTCTCCACGGTTGGATCACACTCGTGCAGTCAATTATTTCAGCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGACTTGCTCATGGTGCTGT
59.89
TCTTGCAAGCCGCCTGAATA
60.04
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGCTCATGGTGCTGTCTCC
60.32
TCTTGCAAGCCGCCTGAATA
60.04
144
PCR template sequence:
CCAGTTCTACTTAGAATTCAAGCCTTTGTTGTTAAATGACTTGCTCATGGTGCTGTCTCCACGGTTGGATCACACTCGTGCAGTCAATTATTTCAGCAAGGTCTCTTTTATTTTCTGGGGTCCATTGTTAACTTTAGTCAGGACCCAGATGTGCACTTTAAATATATTCAGGCGGCTTGCAAGACTGGGCAAATCAAAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
29
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-103-3p(1), mmu-miR-135a-5p(1), mmu-miR-19b-3p(1), mmu-miR-101a-3p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-33-5p(1), mmu-miR-130a-3p(1), mmu-miR-19a-3p(1), mmu-miR-143-3p(1), mmu-miR-381-3p(1), mmu-miR-214-3p(1), mmu-miR-431-5p(1), mmu-miR-501-3p(1), mmu-miR-182-5p(1), mmu-miR-130b-3p(1), mmu-miR-297a-5p(1), mmu-miR-107-3p(1), mmu-miR-129-5p(1), mmu-miR-673-5p(1), mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTATTTCAGCAAGGTCTCTTTTATTT
siRNA sets
AAATAAAAGAGACCTTGCT, AATAAAAGAGACCTTGCTG, ATAAAAGAGACCTTGCTGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCLTC_2195_ORF_1
1.0566
0.228817017
0.99979401
1515
ORF sequence:
ATGACAGCAGATCTTCCTAATGAGCTCATTGAACTGCTGGAGAAAATCGTTCTTGATAACTCCGTATTCAGTGAGCACAGGAATCTGCAAAATCTCCTCATCCTCACTGCAATTAAGGCTGACCGAACACGTGTTATGGAGTATATTAACCGCCTGGATAATTATGATGCTCCAGATATTGCCAACATTGCCATCAGCAATGAGCTGTTTGAAGAGGCATTTGCTATTTTCCGGAAGTTTGATGTCAATACTTCAGCAGTGCAGGTGTTGATTGAACATATTGGAAACCTGGATCGTGCATATGAGTTTGCTGAACGCTGCAATGAGCCTGCTGTTTGGAGTCAACTTGCAAAAGCTCAGTTGCAGAAAGGAATGGTGAAGGAAGCCATTGATTCTTACATCAAAGCAGATGATCCTTCATCTTACATGGAAGTTGTCCAGGCTGCCAATGCCAGCGGAAACTGGGAAGAATTGGTGAAGTATTTGCAGATGGCACGCAAGAAGGCTCGAGAGTCCTATGTGGAGACAGAATTGATATTTGCACTGGCTAAAACAAACCGCCTTGCAGAATTAGAAGAGTTCATCAATGGGCCAAATAATGCTCATATTCAGCAAGTTGGTGACCGTTGTTATGATGAAAAAATGTATGATGCTGCTAAGTTGTTGTACAATAATGTTTCTAACTTTGGACGCTTGGCATCTACCCTTGTTCACCTTGGCGAGTATCAGGCAGCAGTTGATGGTGCCAGAAAAGCTAATAGTACTCGAACATGGAAAGAGGTCTGCTTTGCCTGTGTAGATGGGAAAGAGTTCCGCCTTGCTCAGATGTGTGGACTCCATATTGTGGTGCATGCAGATGAATTAGAGGAGCTTATCAACTACTATCAGGATCGTGGATATTTTGAAGAACTCATCACCATGTTGGAGGCAGCCTTGGGACTGGAGCGAGCTCACATGGGAATGTTCACAGAGCTAGCTATTTTGTATTCTAAATTCAAGCCACAGAAAATGAGAGAACACCTGGAGTTGTTCTGGTCGAGAGTGAATATTCCTAAGGTGCTGAGAGCTGCAGAACAGGCTCATCTCTGGGCAGAGCTGGTGTTTCTGTATGACAAGTACGAAGAGTATGACAATGCCATCATTACCATGATGAATCACCCCACCGATGCATGGAAGGAAGGGCAGTTCAAAGACATCATCACCAAGGTGGCTAATGTGGAACTGTACTACAAAGCAATCCAGTTCTACTTAGAATTCAAGCCTTTGTTGTTAAATGACTTGCTCATGGTGCTGTCTCCACGGTTGGATCACACTCGTGCAGTCAATTATTTCAGCAAGGTCTCTTTTATTTTCTGGGGTCCATTGTTAACTTTAGTCAGGACCCAGATGTGCACTTTAAATATATTCAGGCGGCTTGCAAGACTGGGCAAATCAAAGAAGTGGAAAGAATCTGCAGAGAAAGCAACTGCTATGATCCCGAGCGAGTCAAGAATTTTCTCAAGGAGGCAAAACTAA
Peptide sequence:
MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANASGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVSFIFWGPLLTLVRTQMCTLNIFRRLARLGKSKKWKESAEKATAMIPSESRIFSRRQN
IRESfinder result
IRESfinder score
0.546801778
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page