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mmu_circCers6_329
Basic information of circular RNA
PanCircBase ID:
mmu_circCers6_329
mm39_Chr. Position ID:
chr2|68881123|68901782|+
Gene name:
Cers6
Transcript:
ENSMUST00000028426.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
6,7,8
Exon/intron offsets:
0,17849,20552
Genomic length:
20659
Exon/intron sizes in nt:
9,31,29,107
Flanking exon/introns:
chr2:68877539-68881123|chr2:68901782-68935346
Splice length:
329
Other database IDs:
circAtlas: hsa-CERS6_0012
Human Ortholog IDs:
Mature spliced Sequence:
CCACTCACAGCTGACCTTCACTACTATTACATCCTGGAGCTGTCATTTTATTGGTCTTTAATGGTTTCCCAGTTCACAGATATCAAAAGGAAGGACTTCGGCATTATGTTCCTGCACCACCTTGCAACAATTTTCTTAATAACCTTTTCATATGTCAACAACATGGCCCGAGTAGGAACCCTGGTCCTCTGTCTTCACGACTCAGCCGATGCTCTGCTAGAGGCTGCCAAAATGGCAAATTACGCCAAATTTCAGAAAATGTGTGATCTCCTGTTTGTCATGTTTGCCGTGGTTTTTATCACCACACGGCTGGGCATATTTCCTCTCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGTTTGTCATGTTTGCCGT
59.93
TCCTTTTGATATCTGTGAACTGGGA
59.75
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCATGTTTGCCGTGGTTT
58.89
TCCTTTTGATATCTGTGAACTGGGA
59.75
145
PCR template sequence:
AAATGGCAAATTACGCCAAATTTCAGAAAATGTGTGATCTCCTGTTTGTCATGTTTGCCGTGGTTTTTATCACCACACGGCTGGGCATATTTCCTCTCTGCCACTCACAGCTGACCTTCACTACTATTACATCCTGGAGCTGTCATTTTATTGGTCTTTAATGGTTTCCCAGTTCACAGATATCAAAAGGAAGGACTTCG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TATTTCCTCTCTGCCACTCACAGCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCERS6_329_ORF_1
1.0301
0.076348413
0.34314076
330
ORF sequence:
ATGGTTTCCCAGTTCACAGATATCAAAAGGAAGGACTTCGGCATTATGTTCCTGCACCACCTTGCAACAATTTTCTTAATAACCTTTTCATATGTCAACAACATGGCCCGAGTAGGAACCCTGGTCCTCTGTCTTCACGACTCAGCCGATGCTCTGCTAGAGGCTGCCAAAATGGCAAATTACGCCAAATTTCAGAAAATGTGTGATCTCCTGTTTGTCATGTTTGCCGTGGTTTTTATCACCACACGGCTGGGCATATTTCCTCTCTGCCACTCACAGCTGACCTTCACTACTATTACATCCTGGAGCTGTCATTTTATTGGTCTTTAA
Peptide sequence:
MVSQFTDIKRKDFGIMFLHHLATIFLITFSYVNNMARVGTLVLCLHDSADALLEAAKMANYAKFQKMCDLLFVMFAVVFITTRLGIFPLCHSQLTFTTITSWSCHFIGL
IRESfinder result
IRESfinder score
0.783513709
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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