top of page
mmu_circCep350_4620
Basic information of circular RNA
PanCircBase ID:
mmu_circCep350_4620
mm39_Chr. Position ID:
chr1|155784949|155838306|-
Gene name:
Cep350
Transcript:
ENSMUST00000138762.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
20
Exon/intron indexes:
21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,1414,1932,2684,5512,6245,13110,15361,17210,18909,22304,23585,26611,31513,34895,43950,49357,50516,51940,53271
Genomic length:
53357
Exon/intron sizes in nt:
126,137,141,111,164,203,187,173,142,1061,122,662,147,114,114,614,160,112,44,86
Flanking exon/introns:
chr1:155782398-155784949|chr1:155838306-155848594
Splice length:
4620
Other database IDs:
circBase: mmu_circ_0008289, CIRCpedia: MMU_CIRCpedia_10659, circAtlas: mmu-Cep350_0049
Human Ortholog IDs:
Mature spliced Sequence:
GTAAATTGGCAAGATGAGGAGCAGCAAGTCAAAAGAGGTGCCTTTACCAAATCCCAGGAACTCTCAGAGCAAGGAGACTATTCAAGATGTAACCACATCATGGGATGCACTTTCTCAGACCAAGGCTGCTCTGAGACACATTGAGAACAAATTAGAAGTAACTCCTACAAGCACAGCTGTAATCGATTCTGTGATGGATACTAAGAAGTCTGCAAGTGCTACCCGAAAAATAAGTAGGAAAGATGGGAGATGTCTAGATGATTCTTGGGCCAGTGCTCCAACTTCCAAATTTTCCAAACCACGGAAAGAGAAATCCCGTAGTCCTCTCAGGGCTACCACCCTGGAAAGTAATGTTAAGAAAAACAATCGTGTGGAGTTCCGTGAACCTTTGGTTTCTTATAGGGAAACCCACGGTACACCTTTCAGCTTAAGTCCCAGTCATCTGGAGTCAAAGCATGTCTATTGTATTCACGAGGAGAAGCCCGAGAGTGGGAAGCAGATGGTAGTTAGTCGGGAAGACCGGAATATCCAGTGCTGTGATTTTGAGAGTGCTCAGCCCTCGGTCATCAGTGATACAGTTGTTAGATTTTTAAATGATGGACCAGCAATTGATGCATTGCACAGTTCTGAATGTTTAATGAAAATGGGAGTACATGTAAGAACTGAGGATGAAATGCCTAACAGAACAAAAGGAAGTGAGAACAATTCAAAGCCTTCTCTTAACAACATGGAACATGATGTTGATCCGAAAGTGATGCTGCTGTCTGACTCTTCTCCATCCTCTAGTGCCTGTAATTCCCAAAGATCAGATATTTCAAAGCGGCAGCAACATGATATTAAACTGGAAAAACTTAAAGAGCGGATTAGGAAACAGTGGGAACACTCAGAAGAAATAAACGGCCAGGCCCAGACTCTAGGTCATATTGACCATCCAGTAATGGTTGTTAATGTTGACAACTCGGTGACAACGAAAGTCAGGAAAGTGGCAACAGCACCACCTGCTCCAGCATACAAAGGTTTCAACCCGTCAGAGACCAAGATTCGCACTCCTGATGGAAAAGTGTGGCAGGAGGCGGAGTTTCAAAGCATGAGTAGAGAGCTGTACCGAGACTTAGCACTTCAGTTCACAGATGATACCTCTGTAAAAGAGAAGCCTGTTGAAAAAAGTAAAGAGAAGAAAGTGGTTAAACCAGTACGAAAAATCCAAAAAGTGACACAGTTATCAAATCCAGAATGCAAAACAGGTAGCAGTCGTTTGATAAGTACATCTTCTTGGCGAGATGGACAAAAATTAGTAAAGAAGATTCTGGGACCTGCACCCAAGATGGAGCAAAAAGAGCGAAGACCCACATCGAATGACAGAAGTGGAAGAGAAAGAGTGGCTAAATTTGGGGGCCATATTGGAAGAGCAGAATCGGACCCCAAATTGGATGTTTCACATAAACAGCTTCCACGAAGCTCAGCACGTTCAAGAAGTAGTAGAGCTTGGTCTGAAACTAATATAGTGAAATCAGCTCTGTCCCTTCCAGACAATAAGCAGGAGGAAAGCGCTGCCTTAAACAAGGATTTTTTGCCAGTTGAAATTCGTGGGATTCTTGATGACTTACAGCTAGATTCTTCAGCTCAAGCTGTGAGGCAAGAGGCTGGAGAGGGACAGAATCAGAAGTCATCGGCCCCTGAACAAGTACCTCGGAGTCACAGCCCCGTGAAAAGAAAGCCAGACAAAATAACAGCGAACGAGGATCCGCCTGTGATTTCCAAGAAGCGCCACTATGACACAGATGAGGTACGACAGTACATTGTTAGACAGCAGGAGGAGAGGAGGAGGAGGCAACACGAAGAGAAGAAGGCTCAGAAGGAGGCTACGGAGCAGAAGAACAAACGATTACAGGAGCTCTACCGGAGACAGAGGGAAGCCTTCTCTAAAGCAAAAACTGTGCCTCCTTCTGACCCATTGGTCTCTAGACGGCTTCAGGAAACTTACTCCAAATTGCTACTAGAAAAGACTTTGCTTGAAGAACCAGCCCGTCAGCATGTTACACAGGACATACAGGCCAGACCTGGGTATCAGCCATCTGGAGAATCTGATAAAGAAAACAAAATACAGGAGCGTCCCCCAAGTGCGTCTTCCAGTAGTGACCTGTCCCTGTCAGAGCCTCCACAACCTCTTGCAAGAAGAGACTTGATGGAGCCTACATGGATGCAGCCTGACAGACTGAGCCCTCGAGTTCACAGTTCTCAAGCCCAGCCCCTCGCTGGAACGACTGAGAATTTACTCTCCCATCTCCTGCATCTTGAGCATGTAGGAATTTTGCACAAGGACTATGAATCTGTTTTACCAGCCAAGAAGAGTCATAATACGGCTTCAGGACCGTTAACTTTCACACCTCAACCATATCTGACCTCACAAGCTCCTCATCCAGATGCCTTGTTGAAACCTAGTACCAGCCAATATAAGACTAAACTGGATCGTATTGAAGCCCTGAAAGCAACAGCGGCCTCTCTGTCCAGTAGGATTGAGAGTGAGGCTAAGAAACTAGCTGGGGCCAGCATTAACTATGGGTCAGTGTGGAACACCGAGTGTGATGTGAAGCTAGCACCTCAAGAGAATGGACCTTGGACTAAAGCTATCAGTCCACCTGTGAAAGAGGACATTGAAGATGCTTTCTCTGCCCGGATTCAGAAGATGCTGGGAACCTGTGTGTCTCATGCAGCTTTTGACGATGAGCTTCCTGGTGTAGGCAGCCTTAGTGAATATAAAAAACTTCCTGAGATGATCAGACCCCAGAGTGCCATATCAAGCTTACGAATGAAATCCCCTAGTCCTAAGCCAGGAGGGCTGCTGGCACAGTTGTGCAGGAGGCAGACAGATTCTTCCAGCTCTGACATACAAGCCTGTTCTCAAGAAAGAGCCAAAAGGTCTCTTTGTTCCAGCATAGACTCAGTCAGTGAAGGGCCTCTTCTTAGTGAAGGGAGTCTCTCTGAGGAAGAAGAACGCCGGGATGCACGGCCCCTTTTGAAGGTAGCGGAAATTTTAAAGGAAAAAGAATTCTGTGCTGGGGAGAGAAACTCTTATGAACCCATCAAAGAGTTTCAGAAAGAAGCTGAGAAATTCTTGCCACTTTTTGGGCACATAGGTGGTACACAAAGCAAAGGACCATGGGAAGAACTGGCAAAGGGAAGTCCACACAGCGTCATTAATATTTTTACTAAGTCATATCAGTTATATGGAAAAGGGTTTGAAGACAGGGGAACATTGGTATCACGGCCTTTGAATGCCACCGCAACCCCACTCAGCAGCGTTTCCTATGAAGATGATTTTGTCTCCTCTCCAGGAAGTGGGACACTGACAGAAAGGAAGTCAACTCTTGAATCCCAAGTTGATGGTAGCAGCTTGGGCGTTCAGGAGGAGCATCTGAGCAGACAGTTTGCCTGTGACCTTGCCTCTGTGGATGCTACCTCCCAGCACTCCTCGGGAGCTCGCTCTGCTGGGTCCACTCGCTCCTCCTCAGCTTCTAAAGGGAAGAAGGGGAAGAAAGACAAGATGGACTGGTTGGATTCCCTCACTGGAAGTGCTCAGAACCCACTCATTGATGAGGAAAAAGTACAGTCAGACTCAGAACGCGGCTCCCATCCAAGCAGGAAGCTTGGGACTGGCAGCAAACTTGCTGTTGGAGACTCTGAGCAGACTCTGGATGCTGAGAGCACACTGGAAGACCTGTCTGGGCACTCTGTGAGTGGCTCTTCAGACAAGGGAAGATCTCAGAAGACTCCAACTTCTCCCCTATCTCCAAGTTCACAGAAATTGTTACAGTTTGACCTTCCTGGGACTTCCTTAGAAAGATCTAAGTCCTCAGTCATAGTACCTCCAACTACAACTGGATTTAAGCCCACTGCAGCTTTTACTGACGTGAATAAAACAGAGATGGCTTCAGCACCAGGTCCTCAGCGTTTCTCTCCTGCTGGCCTTCAGCATCGCATGGCTGCAGAACTCAGTTACCTGAGTGCTCTCGAGGAGTCAGTGCGCCAGCTGTCCGACGTGGAGAGAGTTAGGGGCATTGCCCTCGCTCAGCAGGAGAGTGTATCTCTGGCTCAGATCATAAAGGCACAGCAGCAACGTCATGAAAGAGATTTGGCCTTATTGAAGCTAAAAGCTGAACAGGAGGCTTTGGAGTGTCAGAGACAGTTAGAAGAAACCCGGAACAAAACAGCTCAGGTCCATGCAGAATCTTTACAGCAGGTGGTTAAATCACAAAGAGAAGTGACTGAAGTCCTCCAGGAAGCAACTTGTAAAATAGCAGCTCAGCAATCAGAGACCGCGCGCCTCACCACAGATGCAGCGCGGCAGATCTGTGAGATGGCAGAACTAACTCGAACACACCTCGCAGATGCCATCACAACTTCTGGAGTTCCCCTAGCAACACTGTACGACCACCAGCGGCAGCATTTTCCAGACTTCATGAGAAAACTGAGGACCAAAGCTGAAACAGATAGGATAAGTCATTCTGCTTCACACTCCCAGAGTAAAGAAGGCGCTGTGGACTCCAAGCGGCAGAAGTTCTCCCCTTCCCGTGACAGTTACTCTGAGTCTTCAAGATACAAGAGTCATGATTACCGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGAAGTTCTCCCCTTCCC
60.03
TGCTCTGAGAGTTCCTGGGA
59.88
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCAGAAGTTCTCCCCTTCC
60.03
TGCTCTGAGAGTTCCTGGGA
59.88
141
PCR template sequence:
AGAGTAAAGAAGGCGCTGTGGACTCCAAGCGGCAGAAGTTCTCCCCTTCCCGTGACAGTTACTCTGAGTCTTCAAGATACAAGAGTCATGATTACCGGAGGTAAATTGGCAAGATGAGGAGCAGCAAGTCAAAAGAGGTGCCTTTACCAAATCCCAGGAACTCTCAGAGCAAGGAGACTATTCAAGATGTAACCACATCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
43
Interacting miRNAs (#binding sites)
mmu-miR-207(2), mmu-miR-335-3p(2), mmu-miR-1904(2), mmu-miR-9-5p(1), mmu-miR-20b-5p(1), mmu-let-7a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-181a-5p(1), mmu-miR-19b-3p(1), mmu-miR-122-5p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-146a-5p(1), mmu-miR-320-3p(1), mmu-miR-138-5p(1), mmu-miR-185-5p(1), mmu-miR-339-5p(1), mmu-miR-181b-5p(1), mmu-miR-214-3p(1), mmu-let-7d-5p(1), mmu-miR-24-3p(1), mmu-miR-434-5p(1), mmu-miR-351-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-382-5p(1), mmu-miR-370-3p(1), mmu-miR-215-5p(1), mmu-miR-27a-5p(1), mmu-miR-680(1), mmu-miR-29b-2-5p(1), mmu-miR-410-3p(1), mmu-miR-129-5p(1), mmu-miR-673-5p(1), mmu-miR-5101(1), mmu-miR-3105-3p(1), mmu-miR-193b-3p(1), mmu-miR-146b-5p(1), mmu-miR-338-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATGATTACCGGAGGTAAATTGGCAAG
siRNA sets
CTTGCCAATTTACCTCCGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCEP350_4620_ORF_1
0.9938
0.141486648
1
4611
ORF sequence:
ATGAGGAGCAGCAAGTCAAAAGAGGTGCCTTTACCAAATCCCAGGAACTCTCAGAGCAAGGAGACTATTCAAGATGTAACCACATCATGGGATGCACTTTCTCAGACCAAGGCTGCTCTGAGACACATTGAGAACAAATTAGAAGTAACTCCTACAAGCACAGCTGTAATCGATTCTGTGATGGATACTAAGAAGTCTGCAAGTGCTACCCGAAAAATAAGTAGGAAAGATGGGAGATGTCTAGATGATTCTTGGGCCAGTGCTCCAACTTCCAAATTTTCCAAACCACGGAAAGAGAAATCCCGTAGTCCTCTCAGGGCTACCACCCTGGAAAGTAATGTTAAGAAAAACAATCGTGTGGAGTTCCGTGAACCTTTGGTTTCTTATAGGGAAACCCACGGTACACCTTTCAGCTTAAGTCCCAGTCATCTGGAGTCAAAGCATGTCTATTGTATTCACGAGGAGAAGCCCGAGAGTGGGAAGCAGATGGTAGTTAGTCGGGAAGACCGGAATATCCAGTGCTGTGATTTTGAGAGTGCTCAGCCCTCGGTCATCAGTGATACAGTTGTTAGATTTTTAAATGATGGACCAGCAATTGATGCATTGCACAGTTCTGAATGTTTAATGAAAATGGGAGTACATGTAAGAACTGAGGATGAAATGCCTAACAGAACAAAAGGAAGTGAGAACAATTCAAAGCCTTCTCTTAACAACATGGAACATGATGTTGATCCGAAAGTGATGCTGCTGTCTGACTCTTCTCCATCCTCTAGTGCCTGTAATTCCCAAAGATCAGATATTTCAAAGCGGCAGCAACATGATATTAAACTGGAAAAACTTAAAGAGCGGATTAGGAAACAGTGGGAACACTCAGAAGAAATAAACGGCCAGGCCCAGACTCTAGGTCATATTGACCATCCAGTAATGGTTGTTAATGTTGACAACTCGGTGACAACGAAAGTCAGGAAAGTGGCAACAGCACCACCTGCTCCAGCATACAAAGGTTTCAACCCGTCAGAGACCAAGATTCGCACTCCTGATGGAAAAGTGTGGCAGGAGGCGGAGTTTCAAAGCATGAGTAGAGAGCTGTACCGAGACTTAGCACTTCAGTTCACAGATGATACCTCTGTAAAAGAGAAGCCTGTTGAAAAAAGTAAAGAGAAGAAAGTGGTTAAACCAGTACGAAAAATCCAAAAAGTGACACAGTTATCAAATCCAGAATGCAAAACAGGTAGCAGTCGTTTGATAAGTACATCTTCTTGGCGAGATGGACAAAAATTAGTAAAGAAGATTCTGGGACCTGCACCCAAGATGGAGCAAAAAGAGCGAAGACCCACATCGAATGACAGAAGTGGAAGAGAAAGAGTGGCTAAATTTGGGGGCCATATTGGAAGAGCAGAATCGGACCCCAAATTGGATGTTTCACATAAACAGCTTCCACGAAGCTCAGCACGTTCAAGAAGTAGTAGAGCTTGGTCTGAAACTAATATAGTGAAATCAGCTCTGTCCCTTCCAGACAATAAGCAGGAGGAAAGCGCTGCCTTAAACAAGGATTTTTTGCCAGTTGAAATTCGTGGGATTCTTGATGACTTACAGCTAGATTCTTCAGCTCAAGCTGTGAGGCAAGAGGCTGGAGAGGGACAGAATCAGAAGTCATCGGCCCCTGAACAAGTACCTCGGAGTCACAGCCCCGTGAAAAGAAAGCCAGACAAAATAACAGCGAACGAGGATCCGCCTGTGATTTCCAAGAAGCGCCACTATGACACAGATGAGGTACGACAGTACATTGTTAGACAGCAGGAGGAGAGGAGGAGGAGGCAACACGAAGAGAAGAAGGCTCAGAAGGAGGCTACGGAGCAGAAGAACAAACGATTACAGGAGCTCTACCGGAGACAGAGGGAAGCCTTCTCTAAAGCAAAAACTGTGCCTCCTTCTGACCCATTGGTCTCTAGACGGCTTCAGGAAACTTACTCCAAATTGCTACTAGAAAAGACTTTGCTTGAAGAACCAGCCCGTCAGCATGTTACACAGGACATACAGGCCAGACCTGGGTATCAGCCATCTGGAGAATCTGATAAAGAAAACAAAATACAGGAGCGTCCCCCAAGTGCGTCTTCCAGTAGTGACCTGTCCCTGTCAGAGCCTCCACAACCTCTTGCAAGAAGAGACTTGATGGAGCCTACATGGATGCAGCCTGACAGACTGAGCCCTCGAGTTCACAGTTCTCAAGCCCAGCCCCTCGCTGGAACGACTGAGAATTTACTCTCCCATCTCCTGCATCTTGAGCATGTAGGAATTTTGCACAAGGACTATGAATCTGTTTTACCAGCCAAGAAGAGTCATAATACGGCTTCAGGACCGTTAACTTTCACACCTCAACCATATCTGACCTCACAAGCTCCTCATCCAGATGCCTTGTTGAAACCTAGTACCAGCCAATATAAGACTAAACTGGATCGTATTGAAGCCCTGAAAGCAACAGCGGCCTCTCTGTCCAGTAGGATTGAGAGTGAGGCTAAGAAACTAGCTGGGGCCAGCATTAACTATGGGTCAGTGTGGAACACCGAGTGTGATGTGAAGCTAGCACCTCAAGAGAATGGACCTTGGACTAAAGCTATCAGTCCACCTGTGAAAGAGGACATTGAAGATGCTTTCTCTGCCCGGATTCAGAAGATGCTGGGAACCTGTGTGTCTCATGCAGCTTTTGACGATGAGCTTCCTGGTGTAGGCAGCCTTAGTGAATATAAAAAACTTCCTGAGATGATCAGACCCCAGAGTGCCATATCAAGCTTACGAATGAAATCCCCTAGTCCTAAGCCAGGAGGGCTGCTGGCACAGTTGTGCAGGAGGCAGACAGATTCTTCCAGCTCTGACATACAAGCCTGTTCTCAAGAAAGAGCCAAAAGGTCTCTTTGTTCCAGCATAGACTCAGTCAGTGAAGGGCCTCTTCTTAGTGAAGGGAGTCTCTCTGAGGAAGAAGAACGCCGGGATGCACGGCCCCTTTTGAAGGTAGCGGAAATTTTAAAGGAAAAAGAATTCTGTGCTGGGGAGAGAAACTCTTATGAACCCATCAAAGAGTTTCAGAAAGAAGCTGAGAAATTCTTGCCACTTTTTGGGCACATAGGTGGTACACAAAGCAAAGGACCATGGGAAGAACTGGCAAAGGGAAGTCCACACAGCGTCATTAATATTTTTACTAAGTCATATCAGTTATATGGAAAAGGGTTTGAAGACAGGGGAACATTGGTATCACGGCCTTTGAATGCCACCGCAACCCCACTCAGCAGCGTTTCCTATGAAGATGATTTTGTCTCCTCTCCAGGAAGTGGGACACTGACAGAAAGGAAGTCAACTCTTGAATCCCAAGTTGATGGTAGCAGCTTGGGCGTTCAGGAGGAGCATCTGAGCAGACAGTTTGCCTGTGACCTTGCCTCTGTGGATGCTACCTCCCAGCACTCCTCGGGAGCTCGCTCTGCTGGGTCCACTCGCTCCTCCTCAGCTTCTAAAGGGAAGAAGGGGAAGAAAGACAAGATGGACTGGTTGGATTCCCTCACTGGAAGTGCTCAGAACCCACTCATTGATGAGGAAAAAGTACAGTCAGACTCAGAACGCGGCTCCCATCCAAGCAGGAAGCTTGGGACTGGCAGCAAACTTGCTGTTGGAGACTCTGAGCAGACTCTGGATGCTGAGAGCACACTGGAAGACCTGTCTGGGCACTCTGTGAGTGGCTCTTCAGACAAGGGAAGATCTCAGAAGACTCCAACTTCTCCCCTATCTCCAAGTTCACAGAAATTGTTACAGTTTGACCTTCCTGGGACTTCCTTAGAAAGATCTAAGTCCTCAGTCATAGTACCTCCAACTACAACTGGATTTAAGCCCACTGCAGCTTTTACTGACGTGAATAAAACAGAGATGGCTTCAGCACCAGGTCCTCAGCGTTTCTCTCCTGCTGGCCTTCAGCATCGCATGGCTGCAGAACTCAGTTACCTGAGTGCTCTCGAGGAGTCAGTGCGCCAGCTGTCCGACGTGGAGAGAGTTAGGGGCATTGCCCTCGCTCAGCAGGAGAGTGTATCTCTGGCTCAGATCATAAAGGCACAGCAGCAACGTCATGAAAGAGATTTGGCCTTATTGAAGCTAAAAGCTGAACAGGAGGCTTTGGAGTGTCAGAGACAGTTAGAAGAAACCCGGAACAAAACAGCTCAGGTCCATGCAGAATCTTTACAGCAGGTGGTTAAATCACAAAGAGAAGTGACTGAAGTCCTCCAGGAAGCAACTTGTAAAATAGCAGCTCAGCAATCAGAGACCGCGCGCCTCACCACAGATGCAGCGCGGCAGATCTGTGAGATGGCAGAACTAACTCGAACACACCTCGCAGATGCCATCACAACTTCTGGAGTTCCCCTAGCAACACTGTACGACCACCAGCGGCAGCATTTTCCAGACTTCATGAGAAAACTGAGGACCAAAGCTGAAACAGATAGGATAAGTCATTCTGCTTCACACTCCCAGAGTAAAGAAGGCGCTGTGGACTCCAAGCGGCAGAAGTTCTCCCCTTCCCGTGACAGTTACTCTGAGTCTTCAAGATACAAGAGTCATGATTACCGGAGGTAA
Peptide sequence:
MRSSKSKEVPLPNPRNSQSKETIQDVTTSWDALSQTKAALRHIENKLEVTPTSTAVIDSVMDTKKSASATRKISRKDGRCLDDSWASAPTSKFSKPRKEKSRSPLRATTLESNVKKNNRVEFREPLVSYRETHGTPFSLSPSHLESKHVYCIHEEKPESGKQMVVSREDRNIQCCDFESAQPSVISDTVVRFLNDGPAIDALHSSECLMKMGVHVRTEDEMPNRTKGSENNSKPSLNNMEHDVDPKVMLLSDSSPSSSACNSQRSDISKRQQHDIKLEKLKERIRKQWEHSEEINGQAQTLGHIDHPVMVVNVDNSVTTKVRKVATAPPAPAYKGFNPSETKIRTPDGKVWQEAEFQSMSRELYRDLALQFTDDTSVKEKPVEKSKEKKVVKPVRKIQKVTQLSNPECKTGSSRLISTSSWRDGQKLVKKILGPAPKMEQKERRPTSNDRSGRERVAKFGGHIGRAESDPKLDVSHKQLPRSSARSRSSRAWSETNIVKSALSLPDNKQEESAALNKDFLPVEIRGILDDLQLDSSAQAVRQEAGEGQNQKSSAPEQVPRSHSPVKRKPDKITANEDPPVISKKRHYDTDEVRQYIVRQQEERRRRQHEEKKAQKEATEQKNKRLQELYRRQREAFSKAKTVPPSDPLVSRRLQETYSKLLLEKTLLEEPARQHVTQDIQARPGYQPSGESDKENKIQERPPSASSSSDLSLSEPPQPLARRDLMEPTWMQPDRLSPRVHSSQAQPLAGTTENLLSHLLHLEHVGILHKDYESVLPAKKSHNTASGPLTFTPQPYLTSQAPHPDALLKPSTSQYKTKLDRIEALKATAASLSSRIESEAKKLAGASINYGSVWNTECDVKLAPQENGPWTKAISPPVKEDIEDAFSARIQKMLGTCVSHAAFDDELPGVGSLSEYKKLPEMIRPQSAISSLRMKSPSPKPGGLLAQLCRRQTDSSSSDIQACSQERAKRSLCSSIDSVSEGPLLSEGSLSEEEERRDARPLLKVAEILKEKEFCAGERNSYEPIKEFQKEAEKFLPLFGHIGGTQSKGPWEELAKGSPHSVINIFTKSYQLYGKGFEDRGTLVSRPLNATATPLSSVSYEDDFVSSPGSGTLTERKSTLESQVDGSSLGVQEEHLSRQFACDLASVDATSQHSSGARSAGSTRSSSASKGKKGKKDKMDWLDSLTGSAQNPLIDEEKVQSDSERGSHPSRKLGTGSKLAVGDSEQTLDAESTLEDLSGHSVSGSSDKGRSQKTPTSPLSPSSQKLLQFDLPGTSLERSKSSVIVPPTTTGFKPTAAFTDVNKTEMASAPGPQRFSPAGLQHRMAAELSYLSALEESVRQLSDVERVRGIALAQQESVSLAQIIKAQQQRHERDLALLKLKAEQEALECQRQLEETRNKTAQVHAESLQQVVKSQREVTEVLQEATCKIAAQQSETARLTTDAARQICEMAELTRTHLADAITTSGVPLATLYDHQRQHFPDFMRKLRTKAETDRISHSASHSQSKEGAVDSKRQKFSPSRDSYSESSRYKSHDYRR
IRESfinder result
IRESfinder score
0.571691086
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page