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mmu_circCep192_890
Basic information of circular RNA
PanCircBase ID:
mmu_circCep192_890
mm39_Chr. Position ID:
chr18|67936058|67949066|+
Gene name:
Cep192
Transcript:
ENSMUST00000025425.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
3,4,5,6,7,8,9
Exon/intron offsets:
0,1377,4269,7088,9338,10884,12866
Genomic length:
13008
Exon/intron sizes in nt:
1,68,12,91,49,53,12,11,00,000
Flanking exon/introns:
chr18:67933895-67936058|chr18:67949066-67949803
Splice length:
890
Other database IDs:
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
TGAGATGGAAGATTTCCGAGGAATAGCAGAAGAGTCATTTCCAAGCTTTTTAGCCAATTCACTACTTGGTAATAGTGAGGTTTTGGGAAATGTCACTCTTTCATCAAATTTTGGCTTGCCCATTGCTGTTTCTACACTTGCCAGGAGCAGACCCAGCACTGACAACAGGTGTCCTGATGTCCAGGAATCATACTTAATTGAAGAGAGGTTTTCAGTTCCTTCTGCATCATCTCCCAGTTGCCAGAGTGACAACCCTGAGCCAAGAGAAAGATTACGACTCAGCTTTCAGGGTGATGATTCTGCTCTAAGGAAAAAGAACTACATAGAAAGTCCAGATTTGTCACATGCTCTCATGAAACCAAGAGCAGAAGAGAAGCAAGCTAACGCTGCGTCTGTTCAGGGCCAGAGCCTTCTGGGTGGAGTTTCTCCTCTGCAACAGGTACCAGATTCAGCTCTTGATTTCCACTTAAAATCATGGACAAATCATGAAGAGCACAATATTGCCATGCCTGATCCTAAGAAGCATTTCGAAGCCGTGAATCCAAACCGTGATTTCAGCCATACCAGCTTATTAGACAATGAAAAACTGTTAACACTGACAAACTTGGACAGTTCCTCTGATGATGATATTAATGATGAAGAATTTTATGATGATCATTTAGAAGCATATTTTGAGCAACTAGCCATTCCAGGGATGATGTATGAAGCAGGAGGACAGGAGTCGCCAGCAGATGATTTTAAGTTCCCCGCAAATGAAGACAGTATCTTAAACTGTGAGTTTCAATCAGAAAATAACAGTCCTCGGCTTCCTCATGATGCATGCACCTCAGGAAATTCTCCTACTGCTCACACAGAGTCTGAGGGAGGCCATGGTTGTCCGCCGGGAACTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGTCCTCGGCTTCCTCATG
60.18
GCTTGGAAATGACTCTTCTGCT
58.92
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGTCCTCGGCTTCCTCATG
60.18
AGCTTGGAAATGACTCTTCTGC
58.92
142
PCR template sequence:
AATAACAGTCCTCGGCTTCCTCATGATGCATGCACCTCAGGAAATTCTCCTACTGCTCACACAGAGTCTGAGGGAGGCCATGGTTGTCCGCCGGGAACTATGAGATGGAAGATTTCCGAGGAATAGCAGAAGAGTCATTTCCAAGCTTTTTAGCCAATTCACTACTTGGTAATAGTGAGGTTTTGGGAAATGTCACTCTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-298-5p(1), mmu-miR-320-3p(1), mmu-miR-143-3p(1), mmu-miR-138-5p(1), mmu-miR-149-5p(1), mmu-miR-433-3p(1), mmu-miR-182-5p(1), mmu-miR-362-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-335-3p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
CCGCCGGGAACTATGAGATGGAAGAT
siRNA sets
ATCTCATAGTTCCCGGCGG, TTCCATCTCATAGTTCCCG, TCTTCCATCTCATAGTTCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCEP192_890_ORF_1
0.9453
0.050666655
0.96308966
912
ORF sequence:
ATGGAAGATTTCCGAGGAATAGCAGAAGAGTCATTTCCAAGCTTTTTAGCCAATTCACTACTTGGTAATAGTGAGGTTTTGGGAAATGTCACTCTTTCATCAAATTTTGGCTTGCCCATTGCTGTTTCTACACTTGCCAGGAGCAGACCCAGCACTGACAACAGGTGTCCTGATGTCCAGGAATCATACTTAATTGAAGAGAGGTTTTCAGTTCCTTCTGCATCATCTCCCAGTTGCCAGAGTGACAACCCTGAGCCAAGAGAAAGATTACGACTCAGCTTTCAGGGTGATGATTCTGCTCTAAGGAAAAAGAACTACATAGAAAGTCCAGATTTGTCACATGCTCTCATGAAACCAAGAGCAGAAGAGAAGCAAGCTAACGCTGCGTCTGTTCAGGGCCAGAGCCTTCTGGGTGGAGTTTCTCCTCTGCAACAGGTACCAGATTCAGCTCTTGATTTCCACTTAAAATCATGGACAAATCATGAAGAGCACAATATTGCCATGCCTGATCCTAAGAAGCATTTCGAAGCCGTGAATCCAAACCGTGATTTCAGCCATACCAGCTTATTAGACAATGAAAAACTGTTAACACTGACAAACTTGGACAGTTCCTCTGATGATGATATTAATGATGAAGAATTTTATGATGATCATTTAGAAGCATATTTTGAGCAACTAGCCATTCCAGGGATGATGTATGAAGCAGGAGGACAGGAGTCGCCAGCAGATGATTTTAAGTTCCCCGCAAATGAAGACAGTATCTTAAACTGTGAGTTTCAATCAGAAAATAACAGTCCTCGGCTTCCTCATGATGCATGCACCTCAGGAAATTCTCCTACTGCTCACACAGAGTCTGAGGGAGGCCATGGTTGTCCGCCGGGAACTATGAGATGGAAGATTTCCGAGGAATAG
Peptide sequence:
MEDFRGIAEESFPSFLANSLLGNSEVLGNVTLSSNFGLPIAVSTLARSRPSTDNRCPDVQESYLIEERFSVPSASSPSCQSDNPEPRERLRLSFQGDDSALRKKNYIESPDLSHALMKPRAEEKQANAASVQGQSLLGGVSPLQQVPDSALDFHLKSWTNHEEHNIAMPDPKKHFEAVNPNRDFSHTSLLDNEKLLTLTNLDSSSDDDINDEEFYDDHLEAYFEQLAIPGMMYEAGGQESPADDFKFPANEDSILNCEFQSENNSPRLPHDACTSGNSPTAHTESEGGHGCPPGTMRWKISEE
IRESfinder result
IRESfinder score
0.670526229
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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