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mmu_circCep112_1863

Basic information of circular RNA
PanCircBase ID:

mmu_circCep112_1863

mm39_Chr. Position ID:

chr11|108331249|108497221|+

Gene name:

Cep112

Transcript:

ENSMUST00000150863.9

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

17

Exon/intron indexes:

4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20

Exon/intron offsets:

0,29868,31593,46169,46489,57820,62642,66115,67798,78255,78706,79472,82895,90962,129864,150580,165789

Genomic length:

165972

Exon/intron sizes in nt:

17,39,17,84,87,88,71,00,00,00,00,00,00,00,00,00,00,00,00,00,000

Flanking exon/introns:

chr11:108328222-108331249|chr11:108497221-108555321

Splice length:

1863

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

TCCATCTATTTTGATGAACCAAATCAAGCACAACCCAAAGATTCGAGCCCAGAGAAGTTACCTGACTGGGTGAGGGGTGAGCTGCAGACGGGCGAGCAGAGGTTAAGTGACTCATGGCAGTGCTCTTCTGGAGAGGACAACACGCTGGTGCTGGCGGCCAGTGATGCTCACAGAGAACAGTACACTGGAAAGCTCCGAATGAGGTCCCATTCTGTGAGTCCAACTTATAGAGAAGACAAACAACACATTACTTCAAAGATCTGTGAAGTTCATTCAAAAACGTCTCCTATTTCTTTGGATGACAGTGACATTGAAGTTCGCCTGAACAGTTGGAATCTTGGGATTGAAAATCCCCGGTACCTGAGACAGAAACCTCTCCCAGTTTCTCTGATGACTCCCAAGGGCAGCCTGAGGAAGGCTAGCAGTCTTCATGATGACCATTTTCTCTCTCGAATGCACGAGAAAGAGTTGGACATGAAAACAAAAATGATGGAAGCAAAATTTTCTGAAGAGAAACTTAAGCTGCAGCAGAAGCATGATGCCGAAGTGCAGAAGATTTTAGAAAGAAAGAATAATGAATTAGAAGAGTTGAAAATCTTATACAAAAAGAAACAAACTGAAACTGAGGAGACCATACGAAAGCTTGAAAAGAAAGTTCAGATCCTTATCCGTGACTGTCAGGTTATCAGAGAAACTAAAGAAAACCAGATAACCGAGCTGAAGAAGATCTGTGAGCAAAGCACAGAGTCTCTGAATAATGATTGGGAAAAAAAGCTTCACAATGCTGTAGCAGAAATGGAAAAGGACAAATTTGAGCTTCAAAAGCACCATACGGAGACCATCCAGGAACTGCTGGAGGACACAAATGTGCGGCTGAGTAAAATGGAGGCAGACTATGTGGTGCAGATGCAGTCCACAAACCACATGATCAAAGAGCTGGAGGGCCGTGTCCAGCAACTGATGGGAGAAGCAGAGAACAGCAATCTACAGAGGCAGAAATTGACCCAAGAAAAATTGGAGCTGGAAAGATGCTACCAGATAACATGTAATGAATTGCAGGAGTTAAAGACAAGGCGCAACATACTACATAAAGAGAAAGAACATCTTGTAAATGACTATGAGCAAAATGTGAAATTATTAAAAACTAAATATGATTCTGACATAAATCTCCTGAGACAAGAGCATGCACTTTCAACTTCTAAGACATCTGGTGTGATTGAAGAGTTAGAACAGAACATCTGTCAATTAAAACAGCAGGTCCAAGAATCGGAGCTTCAGAGGAAACAGCAAGTAAAAGATCAAGAAAATAAGTTTCACATGGAGAAAAACCATTTAAAACACACCTATGAGAAAAAGGTTCATGAACTGCAGAGTGAACTTGATAAAGAGAAGGAAGATGCTCAGAGGAAGATCCATAAATTTGAGGAAGCTTTGAAGGAGAAGGAGGAGCAGCTCAGCAGAGTGACTGAAGTTCAGAGGCTGCAAGCCCAGCAGGCAGATGCTGCTCTGGAGGAGTTTAAGCGGCAGGTAGAAGTGAACTCTGAGAAGGTCTATGGTGAGATGAAAGAGCAGATGGAAAAAGTGGAAGCAGACCTAACGAGATCCAAGTCTCTCCGTGAGAAGCAGTCCAAGGAGTTTCTGTGGCAGCTGGAAGACGCCAAGCAGAGATATGAACAGCAGATAGTAGAGCTGAAGCTGGAGCATGAACAGGAGAAGACGCACCTATTACAGCAGCACAGCGCAGAGAAGGATAGCCTAGTCCGAGACCATGATCGGGAAATTGAAAACCTGGAGAAACAGCTTCGCGCTGCCAATATGGAGCACGAAAATCAAATTCAAGAGTCCAAGAAACGAGATGCTCAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

ACCTGGAGAAACAGCTTCGC

60.6

CCCCTCACCCAGTCAGGTAA

60.55

154

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

ACCTGGAGAAACAGCTTCGC

60.6

CCCTCACCCAGTCAGGTAAC

59.39

153

PCR template sequence:

AGACCATGATCGGGAAATTGAAAACCTGGAGAAACAGCTTCGCGCTGCCAATATGGAGCACGAAAATCAAATTCAAGAGTCCAAGAAACGAGATGCTCAGTCCATCTATTTTGATGAACCAAATCAAGCACAACCCAAAGATTCGAGCCCAGAGAAGTTACCTGACTGGGTGAGGGGTGAGCTGCAGACGGGCGAGCAGA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

19

Interacting miRNAs (#binding sites)

mmu-miR-127-5p(2), mmu-miR-207(2), mmu-miR-3470b(2), mmu-miR-140-5p(1), mmu-miR-93-5p(1), mmu-miR-199a-5p(1), mmu-miR-103-3p(1), mmu-miR-322-5p(1), mmu-miR-216a-5p(1), mmu-miR-217-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-22-3p(1), mmu-miR-218-5p(1), mmu-miR-370-3p(1), mmu-miR-107-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-5101(1), mmu-miR-335-3p(1), mmu-miR-338-3p(1)

siRNAs for circular RNA silencing
Junction sequence

ACGAGATGCTCAGTCCATCTATTTTG

siRNA sets

CAAAATAGATGGACTGAGC, AAAATAGATGGACTGAGCA, AAATAGATGGACTGAGCAT

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCCEP112_1863_ORF_1

1.2592

0.296945692

1

3528

ORF sequence:

ATGAGGTCCCATTCTGTGAGTCCAACTTATAGAGAAGACAAACAACACATTACTTCAAAGATCTGTGAAGTTCATTCAAAAACGTCTCCTATTTCTTTGGATGACAGTGACATTGAAGTTCGCCTGAACAGTTGGAATCTTGGGATTGAAAATCCCCGGTACCTGAGACAGAAACCTCTCCCAGTTTCTCTGATGACTCCCAAGGGCAGCCTGAGGAAGGCTAGCAGTCTTCATGATGACCATTTTCTCTCTCGAATGCACGAGAAAGAGTTGGACATGAAAACAAAAATGATGGAAGCAAAATTTTCTGAAGAGAAACTTAAGCTGCAGCAGAAGCATGATGCCGAAGTGCAGAAGATTTTAGAAAGAAAGAATAATGAATTAGAAGAGTTGAAAATCTTATACAAAAAGAAACAAACTGAAACTGAGGAGACCATACGAAAGCTTGAAAAGAAAGTTCAGATCCTTATCCGTGACTGTCAGGTTATCAGAGAAACTAAAGAAAACCAGATAACCGAGCTGAAGAAGATCTGTGAGCAAAGCACAGAGTCTCTGAATAATGATTGGGAAAAAAAGCTTCACAATGCTGTAGCAGAAATGGAAAAGGACAAATTTGAGCTTCAAAAGCACCATACGGAGACCATCCAGGAACTGCTGGAGGACACAAATGTGCGGCTGAGTAAAATGGAGGCAGACTATGTGGTGCAGATGCAGTCCACAAACCACATGATCAAAGAGCTGGAGGGCCGTGTCCAGCAACTGATGGGAGAAGCAGAGAACAGCAATCTACAGAGGCAGAAATTGACCCAAGAAAAATTGGAGCTGGAAAGATGCTACCAGATAACATGTAATGAATTGCAGGAGTTAAAGACAAGGCGCAACATACTACATAAAGAGAAAGAACATCTTGTAAATGACTATGAGCAAAATGTGAAATTATTAAAAACTAAATATGATTCTGACATAAATCTCCTGAGACAAGAGCATGCACTTTCAACTTCTAAGACATCTGGTGTGATTGAAGAGTTAGAACAGAACATCTGTCAATTAAAACAGCAGGTCCAAGAATCGGAGCTTCAGAGGAAACAGCAAGTAAAAGATCAAGAAAATAAGTTTCACATGGAGAAAAACCATTTAAAACACACCTATGAGAAAAAGGTTCATGAACTGCAGAGTGAACTTGATAAAGAGAAGGAAGATGCTCAGAGGAAGATCCATAAATTTGAGGAAGCTTTGAAGGAGAAGGAGGAGCAGCTCAGCAGAGTGACTGAAGTTCAGAGGCTGCAAGCCCAGCAGGCAGATGCTGCTCTGGAGGAGTTTAAGCGGCAGGTAGAAGTGAACTCTGAGAAGGTCTATGGTGAGATGAAAGAGCAGATGGAAAAAGTGGAAGCAGACCTAACGAGATCCAAGTCTCTCCGTGAGAAGCAGTCCAAGGAGTTTCTGTGGCAGCTGGAAGACGCCAAGCAGAGATATGAACAGCAGATAGTAGAGCTGAAGCTGGAGCATGAACAGGAGAAGACGCACCTATTACAGCAGCACAGCGCAGAGAAGGATAGCCTAGTCCGAGACCATGATCGGGAAATTGAAAACCTGGAGAAACAGCTTCGCGCTGCCAATATGGAGCACGAAAATCAAATTCAAGAGTCCAAGAAACGAGATGCTCAGTCCATCTATTTTGATGAACCAAATCAAGCACAACCCAAAGATTCGAGCCCAGAGAAGTTACCTGACTGGGTGAGGGGTGAGCTGCAGACGGGCGAGCAGAGGTTAAGTGACTCATGGCAGTGCTCTTCTGGAGAGGACAACACGCTGGTGCTGGCGGCCAGTGATGCTCACAGAGAACAGTACACTGGAAAGCTCCGAATGAGGTCCCATTCTGTGAGTCCAACTTATAGAGAAGACAAACAACACATTACTTCAAAGATCTGTGAAGTTCATTCAAAAACGTCTCCTATTTCTTTGGATGACAGTGACATTGAAGTTCGCCTGAACAGTTGGAATCTTGGGATTGAAAATCCCCGGTACCTGAGACAGAAACCTCTCCCAGTTTCTCTGATGACTCCCAAGGGCAGCCTGAGGAAGGCTAGCAGTCTTCATGATGACCATTTTCTCTCTCGAATGCACGAGAAAGAGTTGGACATGAAAACAAAAATGATGGAAGCAAAATTTTCTGAAGAGAAACTTAAGCTGCAGCAGAAGCATGATGCCGAAGTGCAGAAGATTTTAGAAAGAAAGAATAATGAATTAGAAGAGTTGAAAATCTTATACAAAAAGAAACAAACTGAAACTGAGGAGACCATACGAAAGCTTGAAAAGAAAGTTCAGATCCTTATCCGTGACTGTCAGGTTATCAGAGAAACTAAAGAAAACCAGATAACCGAGCTGAAGAAGATCTGTGAGCAAAGCACAGAGTCTCTGAATAATGATTGGGAAAAAAAGCTTCACAATGCTGTAGCAGAAATGGAAAAGGACAAATTTGAGCTTCAAAAGCACCATACGGAGACCATCCAGGAACTGCTGGAGGACACAAATGTGCGGCTGAGTAAAATGGAGGCAGACTATGTGGTGCAGATGCAGTCCACAAACCACATGATCAAAGAGCTGGAGGGCCGTGTCCAGCAACTGATGGGAGAAGCAGAGAACAGCAATCTACAGAGGCAGAAATTGACCCAAGAAAAATTGGAGCTGGAAAGATGCTACCAGATAACATGTAATGAATTGCAGGAGTTAAAGACAAGGCGCAACATACTACATAAAGAGAAAGAACATCTTGTAAATGACTATGAGCAAAATGTGAAATTATTAAAAACTAAATATGATTCTGACATAAATCTCCTGAGACAAGAGCATGCACTTTCAACTTCTAAGACATCTGGTGTGATTGAAGAGTTAGAACAGAACATCTGTCAATTAAAACAGCAGGTCCAAGAATCGGAGCTTCAGAGGAAACAGCAAGTAAAAGATCAAGAAAATAAGTTTCACATGGAGAAAAACCATTTAAAACACACCTATGAGAAAAAGGTTCATGAACTGCAGAGTGAACTTGATAAAGAGAAGGAAGATGCTCAGAGGAAGATCCATAAATTTGAGGAAGCTTTGAAGGAGAAGGAGGAGCAGCTCAGCAGAGTGACTGAAGTTCAGAGGCTGCAAGCCCAGCAGGCAGATGCTGCTCTGGAGGAGTTTAAGCGGCAGGTAGAAGTGAACTCTGAGAAGGTCTATGGTGAGATGAAAGAGCAGATGGAAAAAGTGGAAGCAGACCTAACGAGATCCAAGTCTCTCCGTGAGAAGCAGTCCAAGGAGTTTCTGTGGCAGCTGGAAGACGCCAAGCAGAGATATGAACAGCAGATAGTAGAGCTGAAGCTGGAGCATGAACAGGAGAAGACGCACCTATTACAGCAGCACAGCGCAGAGAAGGATAGCCTAGTCCGAGACCATGATCGGGAAATTGAAAACCTGGAGAAACAGCTTCGCGCTGCCAATATGGAGCACGAAAATCAAATTCAAGAGTCCAAGAAACGAGATGCTCAG

Peptide sequence:

MRSHSVSPTYREDKQHITSKICEVHSKTSPISLDDSDIEVRLNSWNLGIENPRYLRQKPLPVSLMTPKGSLRKASSLHDDHFLSRMHEKELDMKTKMMEAKFSEEKLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLNNDWEKKLHNAVAEMEKDKFELQKHHTETIQELLEDTNVRLSKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKYDSDINLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQIQESKKRDAQSIYFDEPNQAQPKDSSPEKLPDWVRGELQTGEQRLSDSWQCSSGEDNTLVLAASDAHREQYTGKLRMRSHSVSPTYREDKQHITSKICEVHSKTSPISLDDSDIEVRLNSWNLGIENPRYLRQKPLPVSLMTPKGSLRKASSLHDDHFLSRMHEKELDMKTKMMEAKFSEEKLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLNNDWEKKLHNAVAEMEKDKFELQKHHTETIQELLEDTNVRLSKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKYDSDINLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQIQESKKRDAQ

IRESfinder result

IRESfinder score

0.521087248

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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