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mmu_circCep112_1863
Basic information of circular RNA
PanCircBase ID:
mmu_circCep112_1863
mm39_Chr. Position ID:
chr11|108331249|108497221|+
Gene name:
Cep112
Transcript:
ENSMUST00000150863.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
17
Exon/intron indexes:
4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20
Exon/intron offsets:
0,29868,31593,46169,46489,57820,62642,66115,67798,78255,78706,79472,82895,90962,129864,150580,165789
Genomic length:
165972
Exon/intron sizes in nt:
17,39,17,84,87,88,71,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr11:108328222-108331249|chr11:108497221-108555321
Splice length:
1863
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TCCATCTATTTTGATGAACCAAATCAAGCACAACCCAAAGATTCGAGCCCAGAGAAGTTACCTGACTGGGTGAGGGGTGAGCTGCAGACGGGCGAGCAGAGGTTAAGTGACTCATGGCAGTGCTCTTCTGGAGAGGACAACACGCTGGTGCTGGCGGCCAGTGATGCTCACAGAGAACAGTACACTGGAAAGCTCCGAATGAGGTCCCATTCTGTGAGTCCAACTTATAGAGAAGACAAACAACACATTACTTCAAAGATCTGTGAAGTTCATTCAAAAACGTCTCCTATTTCTTTGGATGACAGTGACATTGAAGTTCGCCTGAACAGTTGGAATCTTGGGATTGAAAATCCCCGGTACCTGAGACAGAAACCTCTCCCAGTTTCTCTGATGACTCCCAAGGGCAGCCTGAGGAAGGCTAGCAGTCTTCATGATGACCATTTTCTCTCTCGAATGCACGAGAAAGAGTTGGACATGAAAACAAAAATGATGGAAGCAAAATTTTCTGAAGAGAAACTTAAGCTGCAGCAGAAGCATGATGCCGAAGTGCAGAAGATTTTAGAAAGAAAGAATAATGAATTAGAAGAGTTGAAAATCTTATACAAAAAGAAACAAACTGAAACTGAGGAGACCATACGAAAGCTTGAAAAGAAAGTTCAGATCCTTATCCGTGACTGTCAGGTTATCAGAGAAACTAAAGAAAACCAGATAACCGAGCTGAAGAAGATCTGTGAGCAAAGCACAGAGTCTCTGAATAATGATTGGGAAAAAAAGCTTCACAATGCTGTAGCAGAAATGGAAAAGGACAAATTTGAGCTTCAAAAGCACCATACGGAGACCATCCAGGAACTGCTGGAGGACACAAATGTGCGGCTGAGTAAAATGGAGGCAGACTATGTGGTGCAGATGCAGTCCACAAACCACATGATCAAAGAGCTGGAGGGCCGTGTCCAGCAACTGATGGGAGAAGCAGAGAACAGCAATCTACAGAGGCAGAAATTGACCCAAGAAAAATTGGAGCTGGAAAGATGCTACCAGATAACATGTAATGAATTGCAGGAGTTAAAGACAAGGCGCAACATACTACATAAAGAGAAAGAACATCTTGTAAATGACTATGAGCAAAATGTGAAATTATTAAAAACTAAATATGATTCTGACATAAATCTCCTGAGACAAGAGCATGCACTTTCAACTTCTAAGACATCTGGTGTGATTGAAGAGTTAGAACAGAACATCTGTCAATTAAAACAGCAGGTCCAAGAATCGGAGCTTCAGAGGAAACAGCAAGTAAAAGATCAAGAAAATAAGTTTCACATGGAGAAAAACCATTTAAAACACACCTATGAGAAAAAGGTTCATGAACTGCAGAGTGAACTTGATAAAGAGAAGGAAGATGCTCAGAGGAAGATCCATAAATTTGAGGAAGCTTTGAAGGAGAAGGAGGAGCAGCTCAGCAGAGTGACTGAAGTTCAGAGGCTGCAAGCCCAGCAGGCAGATGCTGCTCTGGAGGAGTTTAAGCGGCAGGTAGAAGTGAACTCTGAGAAGGTCTATGGTGAGATGAAAGAGCAGATGGAAAAAGTGGAAGCAGACCTAACGAGATCCAAGTCTCTCCGTGAGAAGCAGTCCAAGGAGTTTCTGTGGCAGCTGGAAGACGCCAAGCAGAGATATGAACAGCAGATAGTAGAGCTGAAGCTGGAGCATGAACAGGAGAAGACGCACCTATTACAGCAGCACAGCGCAGAGAAGGATAGCCTAGTCCGAGACCATGATCGGGAAATTGAAAACCTGGAGAAACAGCTTCGCGCTGCCAATATGGAGCACGAAAATCAAATTCAAGAGTCCAAGAAACGAGATGCTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTGGAGAAACAGCTTCGC
60.6
CCCCTCACCCAGTCAGGTAA
60.55
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTGGAGAAACAGCTTCGC
60.6
CCCTCACCCAGTCAGGTAAC
59.39
153
PCR template sequence:
AGACCATGATCGGGAAATTGAAAACCTGGAGAAACAGCTTCGCGCTGCCAATATGGAGCACGAAAATCAAATTCAAGAGTCCAAGAAACGAGATGCTCAGTCCATCTATTTTGATGAACCAAATCAAGCACAACCCAAAGATTCGAGCCCAGAGAAGTTACCTGACTGGGTGAGGGGTGAGCTGCAGACGGGCGAGCAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
19
Interacting miRNAs (#binding sites)
mmu-miR-127-5p(2), mmu-miR-207(2), mmu-miR-3470b(2), mmu-miR-140-5p(1), mmu-miR-93-5p(1), mmu-miR-199a-5p(1), mmu-miR-103-3p(1), mmu-miR-322-5p(1), mmu-miR-216a-5p(1), mmu-miR-217-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-22-3p(1), mmu-miR-218-5p(1), mmu-miR-370-3p(1), mmu-miR-107-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-5101(1), mmu-miR-335-3p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACGAGATGCTCAGTCCATCTATTTTG
siRNA sets
CAAAATAGATGGACTGAGC, AAAATAGATGGACTGAGCA, AAATAGATGGACTGAGCAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCEP112_1863_ORF_1
1.2592
0.296945692
1
3528
ORF sequence:
ATGAGGTCCCATTCTGTGAGTCCAACTTATAGAGAAGACAAACAACACATTACTTCAAAGATCTGTGAAGTTCATTCAAAAACGTCTCCTATTTCTTTGGATGACAGTGACATTGAAGTTCGCCTGAACAGTTGGAATCTTGGGATTGAAAATCCCCGGTACCTGAGACAGAAACCTCTCCCAGTTTCTCTGATGACTCCCAAGGGCAGCCTGAGGAAGGCTAGCAGTCTTCATGATGACCATTTTCTCTCTCGAATGCACGAGAAAGAGTTGGACATGAAAACAAAAATGATGGAAGCAAAATTTTCTGAAGAGAAACTTAAGCTGCAGCAGAAGCATGATGCCGAAGTGCAGAAGATTTTAGAAAGAAAGAATAATGAATTAGAAGAGTTGAAAATCTTATACAAAAAGAAACAAACTGAAACTGAGGAGACCATACGAAAGCTTGAAAAGAAAGTTCAGATCCTTATCCGTGACTGTCAGGTTATCAGAGAAACTAAAGAAAACCAGATAACCGAGCTGAAGAAGATCTGTGAGCAAAGCACAGAGTCTCTGAATAATGATTGGGAAAAAAAGCTTCACAATGCTGTAGCAGAAATGGAAAAGGACAAATTTGAGCTTCAAAAGCACCATACGGAGACCATCCAGGAACTGCTGGAGGACACAAATGTGCGGCTGAGTAAAATGGAGGCAGACTATGTGGTGCAGATGCAGTCCACAAACCACATGATCAAAGAGCTGGAGGGCCGTGTCCAGCAACTGATGGGAGAAGCAGAGAACAGCAATCTACAGAGGCAGAAATTGACCCAAGAAAAATTGGAGCTGGAAAGATGCTACCAGATAACATGTAATGAATTGCAGGAGTTAAAGACAAGGCGCAACATACTACATAAAGAGAAAGAACATCTTGTAAATGACTATGAGCAAAATGTGAAATTATTAAAAACTAAATATGATTCTGACATAAATCTCCTGAGACAAGAGCATGCACTTTCAACTTCTAAGACATCTGGTGTGATTGAAGAGTTAGAACAGAACATCTGTCAATTAAAACAGCAGGTCCAAGAATCGGAGCTTCAGAGGAAACAGCAAGTAAAAGATCAAGAAAATAAGTTTCACATGGAGAAAAACCATTTAAAACACACCTATGAGAAAAAGGTTCATGAACTGCAGAGTGAACTTGATAAAGAGAAGGAAGATGCTCAGAGGAAGATCCATAAATTTGAGGAAGCTTTGAAGGAGAAGGAGGAGCAGCTCAGCAGAGTGACTGAAGTTCAGAGGCTGCAAGCCCAGCAGGCAGATGCTGCTCTGGAGGAGTTTAAGCGGCAGGTAGAAGTGAACTCTGAGAAGGTCTATGGTGAGATGAAAGAGCAGATGGAAAAAGTGGAAGCAGACCTAACGAGATCCAAGTCTCTCCGTGAGAAGCAGTCCAAGGAGTTTCTGTGGCAGCTGGAAGACGCCAAGCAGAGATATGAACAGCAGATAGTAGAGCTGAAGCTGGAGCATGAACAGGAGAAGACGCACCTATTACAGCAGCACAGCGCAGAGAAGGATAGCCTAGTCCGAGACCATGATCGGGAAATTGAAAACCTGGAGAAACAGCTTCGCGCTGCCAATATGGAGCACGAAAATCAAATTCAAGAGTCCAAGAAACGAGATGCTCAGTCCATCTATTTTGATGAACCAAATCAAGCACAACCCAAAGATTCGAGCCCAGAGAAGTTACCTGACTGGGTGAGGGGTGAGCTGCAGACGGGCGAGCAGAGGTTAAGTGACTCATGGCAGTGCTCTTCTGGAGAGGACAACACGCTGGTGCTGGCGGCCAGTGATGCTCACAGAGAACAGTACACTGGAAAGCTCCGAATGAGGTCCCATTCTGTGAGTCCAACTTATAGAGAAGACAAACAACACATTACTTCAAAGATCTGTGAAGTTCATTCAAAAACGTCTCCTATTTCTTTGGATGACAGTGACATTGAAGTTCGCCTGAACAGTTGGAATCTTGGGATTGAAAATCCCCGGTACCTGAGACAGAAACCTCTCCCAGTTTCTCTGATGACTCCCAAGGGCAGCCTGAGGAAGGCTAGCAGTCTTCATGATGACCATTTTCTCTCTCGAATGCACGAGAAAGAGTTGGACATGAAAACAAAAATGATGGAAGCAAAATTTTCTGAAGAGAAACTTAAGCTGCAGCAGAAGCATGATGCCGAAGTGCAGAAGATTTTAGAAAGAAAGAATAATGAATTAGAAGAGTTGAAAATCTTATACAAAAAGAAACAAACTGAAACTGAGGAGACCATACGAAAGCTTGAAAAGAAAGTTCAGATCCTTATCCGTGACTGTCAGGTTATCAGAGAAACTAAAGAAAACCAGATAACCGAGCTGAAGAAGATCTGTGAGCAAAGCACAGAGTCTCTGAATAATGATTGGGAAAAAAAGCTTCACAATGCTGTAGCAGAAATGGAAAAGGACAAATTTGAGCTTCAAAAGCACCATACGGAGACCATCCAGGAACTGCTGGAGGACACAAATGTGCGGCTGAGTAAAATGGAGGCAGACTATGTGGTGCAGATGCAGTCCACAAACCACATGATCAAAGAGCTGGAGGGCCGTGTCCAGCAACTGATGGGAGAAGCAGAGAACAGCAATCTACAGAGGCAGAAATTGACCCAAGAAAAATTGGAGCTGGAAAGATGCTACCAGATAACATGTAATGAATTGCAGGAGTTAAAGACAAGGCGCAACATACTACATAAAGAGAAAGAACATCTTGTAAATGACTATGAGCAAAATGTGAAATTATTAAAAACTAAATATGATTCTGACATAAATCTCCTGAGACAAGAGCATGCACTTTCAACTTCTAAGACATCTGGTGTGATTGAAGAGTTAGAACAGAACATCTGTCAATTAAAACAGCAGGTCCAAGAATCGGAGCTTCAGAGGAAACAGCAAGTAAAAGATCAAGAAAATAAGTTTCACATGGAGAAAAACCATTTAAAACACACCTATGAGAAAAAGGTTCATGAACTGCAGAGTGAACTTGATAAAGAGAAGGAAGATGCTCAGAGGAAGATCCATAAATTTGAGGAAGCTTTGAAGGAGAAGGAGGAGCAGCTCAGCAGAGTGACTGAAGTTCAGAGGCTGCAAGCCCAGCAGGCAGATGCTGCTCTGGAGGAGTTTAAGCGGCAGGTAGAAGTGAACTCTGAGAAGGTCTATGGTGAGATGAAAGAGCAGATGGAAAAAGTGGAAGCAGACCTAACGAGATCCAAGTCTCTCCGTGAGAAGCAGTCCAAGGAGTTTCTGTGGCAGCTGGAAGACGCCAAGCAGAGATATGAACAGCAGATAGTAGAGCTGAAGCTGGAGCATGAACAGGAGAAGACGCACCTATTACAGCAGCACAGCGCAGAGAAGGATAGCCTAGTCCGAGACCATGATCGGGAAATTGAAAACCTGGAGAAACAGCTTCGCGCTGCCAATATGGAGCACGAAAATCAAATTCAAGAGTCCAAGAAACGAGATGCTCAG
Peptide sequence:
MRSHSVSPTYREDKQHITSKICEVHSKTSPISLDDSDIEVRLNSWNLGIENPRYLRQKPLPVSLMTPKGSLRKASSLHDDHFLSRMHEKELDMKTKMMEAKFSEEKLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLNNDWEKKLHNAVAEMEKDKFELQKHHTETIQELLEDTNVRLSKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKYDSDINLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQIQESKKRDAQSIYFDEPNQAQPKDSSPEKLPDWVRGELQTGEQRLSDSWQCSSGEDNTLVLAASDAHREQYTGKLRMRSHSVSPTYREDKQHITSKICEVHSKTSPISLDDSDIEVRLNSWNLGIENPRYLRQKPLPVSLMTPKGSLRKASSLHDDHFLSRMHEKELDMKTKMMEAKFSEEKLKLQQKHDAEVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLNNDWEKKLHNAVAEMEKDKFELQKHHTETIQELLEDTNVRLSKMEADYVVQMQSTNHMIKELEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKYDSDINLLRQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELDKEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQLRAANMEHENQIQESKKRDAQ
IRESfinder result
IRESfinder score
0.521087248
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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