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mmu_circCebpz_1145
Basic information of circular RNA
PanCircBase ID:
mmu_circCebpz_1145
mm39_Chr. Position ID:
chr17|79229558|79239770|-
Gene name:
Cebpz
Transcript:
ENSMUST00000024885.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
12,11,10,9,8,7,6,5,4,3
Exon/intron offsets:
0,384,1106,2316,3784,3953,4739,7148,9180,9980
Genomic length:
10212
Exon/intron sizes in nt:
18,55,81,01,67,69,10,30,00,00,00,000
Flanking exon/introns:
chr17:79229150-79229558|chr17:79239770-79242003
Splice length:
1145
Other database IDs:
circAtlas: hsa-CEBPZ_0008, CIRCpedia: HSA_CIRCpedia_163612
Human Ortholog IDs:
Mature spliced Sequence:
AAAGATGTTGGATCCAGGCCTGACGACATGTTCCAAGCAAGCGATGTTTCTCAACCTGATCTACAAATCTTTGAAAGCTGACATCATGCTGCGCCGGGTGAAGGCGTTTGTGAAGAGGTTGCTTCAGGTCACCTGCACACAGATGCCGCCATTCATTTGTGGAGCGTTGTATCTTGTGTCTGAGATCCTTAAAGCAAAACCAGATTTAAGAAGCCAACTAGATGATCATCCGGAGTCTGACGAAGAAAACTTCGTTGACGTGGGAGATGACAGTGACGATGAAAAGTTTACCGATGCAGACAAAGAAACAGCAACAGATGCAGTAAAGGAAGTAGAGTCAAAGGAGACAGAGCCTGAGAGCAGCGCAGAGGCCGAGAAGCCGAAGGCCGCTTCCTGGGTGCACTTTGACAACTTGAAAGGTGGCAAGCAAATAAAGACATATGATCCATTCAGTAGAAATCCTTTATTCTGCGGAGCTGAAAATACAACTCTTTGGGAGCTCAAAAAGCTATCTGAACATTTCCATCCTTCTGTGGCCCTTTTTGCAAAGACTATCCTTGAGGGAAATTGTATTCAATACTCAGGGGACCCACTGCAGGATTTCACACTCATGAGATTCTTGGATCGATTTGTGTACCGAAATCCAAAGCTACATAAAGGCAAAGAAAATACCGACAGTGTTGTGATGCAACCCAAAAGGAAGCACTTTATGAAGAATGTCAGAGATCTCGCTGTGAACAGCAAGGAGTTCCTTGCAAAAGAAGAAAGCCAGATCCCAGTGGATGAAGTGTTCTTCTATAGGTATTACAAAAAAGTTGCTGTTGTTAAAGACAAACAGAAACGCAGTGCAGATGAAGAAAGTATAGAAGATATTGATGATGAAGAATTTGAAAATATGATTGACACATTTGAAGACGACAACTGCTTCCCACCTGGGAAGGATGATATTGATTTTGCCAGCAATATGAAAAAAGCAAAAGGAGCTAAGGCTGACTTGGAAGACTCAGAGAGTAGTGACGGCGAACTTGGAGACCTGGATGACGATGAAGTTTCTCTCGGAAGTATGAACGATGAAGACTTTGAGATTGATGAAGATGGAGGAACGTTCATGGATGTGTCAGATGATGAAAGTGAAGATGCTCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGAGGAACGTTCATGGATGT
59.37
CGCAGCATGATGTCAGCTTT
59.55
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGGAACGTTCATGGATGTG
58.99
CGCAGCATGATGTCAGCTTT
59.55
142
PCR template sequence:
GAAGTTTCTCTCGGAAGTATGAACGATGAAGACTTTGAGATTGATGAAGATGGAGGAACGTTCATGGATGTGTCAGATGATGAAAGTGAAGATGCTCCAGAAAGATGTTGGATCCAGGCCTGACGACATGTTCCAAGCAAGCGATGTTTCTCAACCTGATCTACAAATCTTTGAAAGCTGACATCATGCTGCGCCGGGTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-17-5p(2), mmu-miR-335-3p(2), mmu-miR-20b-5p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-217-5p(1), mmu-miR-382-5p(1), mmu-miR-673-5p(1), mmu-miR-484(1), mmu-miR-350-3p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GAAGATGCTCCAGAAAGATGTTGGAT
siRNA sets
AACATCTTTCTGGAGCATC,ACATCTTTCTGGAGCATCT,ATCTTTCTGGAGCATCTTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCEBPZ_1145_ORF_1
1.1065
0.288177669
0.998237238
1164
ORF sequence:
ATGTTGGATCCAGGCCTGACGACATGTTCCAAGCAAGCGATGTTTCTCAACCTGATCTACAAATCTTTGAAAGCTGACATCATGCTGCGCCGGGTGAAGGCGTTTGTGAAGAGGTTGCTTCAGGTCACCTGCACACAGATGCCGCCATTCATTTGTGGAGCGTTGTATCTTGTGTCTGAGATCCTTAAAGCAAAACCAGATTTAAGAAGCCAACTAGATGATCATCCGGAGTCTGACGAAGAAAACTTCGTTGACGTGGGAGATGACAGTGACGATGAAAAGTTTACCGATGCAGACAAAGAAACAGCAACAGATGCAGTAAAGGAAGTAGAGTCAAAGGAGACAGAGCCTGAGAGCAGCGCAGAGGCCGAGAAGCCGAAGGCCGCTTCCTGGGTGCACTTTGACAACTTGAAAGGTGGCAAGCAAATAAAGACATATGATCCATTCAGTAGAAATCCTTTATTCTGCGGAGCTGAAAATACAACTCTTTGGGAGCTCAAAAAGCTATCTGAACATTTCCATCCTTCTGTGGCCCTTTTTGCAAAGACTATCCTTGAGGGAAATTGTATTCAATACTCAGGGGACCCACTGCAGGATTTCACACTCATGAGATTCTTGGATCGATTTGTGTACCGAAATCCAAAGCTACATAAAGGCAAAGAAAATACCGACAGTGTTGTGATGCAACCCAAAAGGAAGCACTTTATGAAGAATGTCAGAGATCTCGCTGTGAACAGCAAGGAGTTCCTTGCAAAAGAAGAAAGCCAGATCCCAGTGGATGAAGTGTTCTTCTATAGGTATTACAAAAAAGTTGCTGTTGTTAAAGACAAACAGAAACGCAGTGCAGATGAAGAAAGTATAGAAGATATTGATGATGAAGAATTTGAAAATATGATTGACACATTTGAAGACGACAACTGCTTCCCACCTGGGAAGGATGATATTGATTTTGCCAGCAATATGAAAAAAGCAAAAGGAGCTAAGGCTGACTTGGAAGACTCAGAGAGTAGTGACGGCGAACTTGGAGACCTGGATGACGATGAAGTTTCTCTCGGAAGTATGAACGATGAAGACTTTGAGATTGATGAAGATGGAGGAACGTTCATGGATGTGTCAGATGATGAAAGTGAAGATGCTCCAGAAAGATGTTGGATCCAGGCCTGA
Peptide sequence:
MLDPGLTTCSKQAMFLNLIYKSLKADIMLRRVKAFVKRLLQVTCTQMPPFICGALYLVSEILKAKPDLRSQLDDHPESDEENFVDVGDDSDDEKFTDADKETATDAVKEVESKETEPESSAEAEKPKAASWVHFDNLKGGKQIKTYDPFSRNPLFCGAENTTLWELKKLSEHFHPSVALFAKTILEGNCIQYSGDPLQDFTLMRFLDRFVYRNPKLHKGKENTDSVVMQPKRKHFMKNVRDLAVNSKEFLAKEESQIPVDEVFFYRYYKKVAVVKDKQKRSADEESIEDIDDEEFENMIDTFEDDNCFPPGKDDIDFASNMKKAKGAKADLEDSESSDGELGDLDDDEVSLGSMNDEDFEIDEDGGTFMDVSDDESEDAPERCWIQA
IRESfinder result
IRESfinder score
0.412848798
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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