top of page
mmu_circCdk14_894
Basic information of circular RNA
PanCircBase ID:
mmu_circCdk14_894
mm39_Chr. Position ID:
chr5|4938836|5185413|-
Gene name:
Cdk14
Transcript:
ENSMUST00000115451.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
13,12,11,10,9,8,7,6,5
Exon/intron offsets:
0,5191,33290,60695,121996,147589,204121,214955,246482
Genomic length:
246577
Exon/intron sizes in nt:
144,140,49,64,94,121,124,63,95
Flanking exon/introns:
chr5:4856731-4938836|chr5:5185413-5245277
Splice length:
894
Other database IDs:
CIRCpedia: HSA_CIRCpedia_132762
Human Ortholog IDs:
Mature spliced Sequence:
CTTCCCTGTTGAAAGGACTAAAGCACGCCAACATCGTGTTGCTTCACGACATCATCCACACTAAGGAAACCCTGACCCTTGTCTTTGAATACGTGCACACTGATTTATGTCAGTACATGGACAAGCACCCTGGAGGACTCCATCCAGATAATGTGAAGTTGTTTTTATTTCAGCTGCTGCGAGGACTGTCTTACATCCACCAGCGTTATATTTTGCACAGAGACCTGAAACCGCAGAACCTTCTCATCAGCGATACGGGGGAGTTGAAGCTGGCAGATTTCGGTCTGGCAAGAGCAAAATCCGTCCCTAGCCACACATACTCCAATGAAGTGGTTACCTTGTGGTACAGACCTCCAGATGTTCTTCTGGGCTCTACAGAATATTCCACCTGCCTTGACATGTGGGGAGTTGGCTGTATCTTCGTTGAGATGATCCAAGGAGTTGCTGCGTTTCCAGGAATGAAAGACATTCAGGATCAACTTGAACGGATATTTCTGGTTCTTGGAACACCGAATGAGGACACGTGGCCTGGAGTTCATTCTTTACCACATTTTAAGCCAGAACGCTTTACCGTGTACAGCTCTAAAAGCCTTAGACAAGCATGGAATAAGCTCAGCTATGTAAATCATGCTGAAGACTTGGCCTCCAAGCTTCTCCAGTGTTCCCCAAAGAACAGGCTATCAGCACAGGCCGCCTTGAGCCATGAGTATTTCAGCGATCTGCCTCCACGGCTATGGGAGCTGACTGATATGTCTTCTATTTTTACCGTCCCAAATGTGAGATTGCAACCAGAAGCTGGAGAGAGCATGAGGGCCTTTGGAAAAAACAATAGTTATGGGAAAAGCCTATCGAACAGCAAACACTGACAAGCCCGGCACTCTCAGGAGAGCACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCATGAGGGCCTTTGGAAA
59.89
GACAAGGGTCAGGGTTTCCT
59.23
174
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCATGAGGGCCTTTGGAAA
59.89
AGACAAGGGTCAGGGTTTCC
59.23
175
PCR template sequence:
GCTGGAGAGAGCATGAGGGCCTTTGGAAAAAACAATAGTTATGGGAAAAGCCTATCGAACAGCAAACACTGACAAGCCCGGCACTCTCAGGAGAGCACAGCTTCCCTGTTGAAAGGACTAAAGCACGCCAACATCGTGTTGCTTCACGACATCATCCACACTAAGGAAACCCTGACCCTTGTCTTTGAATACGTGCACAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-23b-3p(1), mmu-miR-709(1), mmu-miR-23a-3p(1), mmu-miR-138-5p(1), mmu-miR-410-3p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CAGGAGAGCACAGCTTCCCTGTTGAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.629704223
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page