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mmu_circCdk10_330
Basic information of circular RNA
PanCircBase ID:
mmu_circCdk10_330
mm39_Chr. Position ID:
chr8|123953085|123954480|+
Gene name:
Cdk10
Transcript:
ENSMUST00000036880.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
2,3,4,5
Exon/intron offsets:
0,599,1076,1313
Genomic length:
1395
Exon/intron sizes in nt:
73,72,103,82
Flanking exon/introns:
chr8:123951707-123953085|chr8:123954480-123955067
Splice length:
330
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CTGGGAAGATGCCGAAGCGTTAAGGAGTTTGAGAAGCTGAACCGGATTGGCGAGGGCACCTATGGCATCGTGTATCGGGCCAGGGATACCCAGACAGATGAAATTGTCGCCCTGAAGAAGGTGCGGATGGACAAAGAGAAGGATGGCATCCCCATCAGCAGCCTGCGTGAGATCACACTGCTCTTGCGTCTCCGCCATCCAAACATTGTGGAGCTGAAGGAGGTGGTTGTGGGCAACCACCTGGAGAGCATCTTCCTGGTCATGGGTTACTGCGAACAAGATCTGGCCAGCCTATTGGAAAATATGCCAACACCCTTCTCGGAGGCCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGTCATGGGTTACTGCGA
59.75
GCCCGATACACGATGCCATA
60.04
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCATCTTCCTGGTCATGGGT
59.74
GCCCGATACACGATGCCATA
60.04
163
PCR template sequence:
GGGCAACCACCTGGAGAGCATCTTCCTGGTCATGGGTTACTGCGAACAAGATCTGGCCAGCCTATTGGAAAATATGCCAACACCCTTCTCGGAGGCCCAGCTGGGAAGATGCCGAAGCGTTAAGGAGTTTGAGAAGCTGAACCGGATTGGCGAGGGCACCTATGGCATCGTGTATCGGGCCAGGGATACCCAGACAGATG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CTCGGAGGCCCAGCTGGGAAGATGCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCDK10_330_ORF_1
1.2874
0.581203668
0.96660458
534
ORF sequence:
ATGGACAAAGAGAAGGATGGCATCCCCATCAGCAGCCTGCGTGAGATCACACTGCTCTTGCGTCTCCGCCATCCAAACATTGTGGAGCTGAAGGAGGTGGTTGTGGGCAACCACCTGGAGAGCATCTTCCTGGTCATGGGTTACTGCGAACAAGATCTGGCCAGCCTATTGGAAAATATGCCAACACCCTTCTCGGAGGCCCAGCTGGGAAGATGCCGAAGCGTTAAGGAGTTTGAGAAGCTGAACCGGATTGGCGAGGGCACCTATGGCATCGTGTATCGGGCCAGGGATACCCAGACAGATGAAATTGTCGCCCTGAAGAAGGTGCGGATGGACAAAGAGAAGGATGGCATCCCCATCAGCAGCCTGCGTGAGATCACACTGCTCTTGCGTCTCCGCCATCCAAACATTGTGGAGCTGAAGGAGGTGGTTGTGGGCAACCACCTGGAGAGCATCTTCCTGGTCATGGGTTACTGCGAACAAGATCTGGCCAGCCTATTGGAAAATATGCCAACACCCTTCTCGGAGGCCCAG
Peptide sequence:
MDKEKDGIPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQLGRCRSVKEFEKLNRIGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQ
IRESfinder result
IRESfinder score
0.197734825
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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