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mmu_circCdan1_159
Basic information of circular RNA
PanCircBase ID:
mmu_circCdan1_159
mm39_Chr. Position ID:
chr2|120604300|120608080|-
Gene name:
Cdan1
Transcript:
ENSMUST00000148285.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
8,7
Exon/intron offsets:
0,3714
Genomic length:
3780
Exon/intron sizes in nt:
93,66
Flanking exon/introns:
chr2:120603835-120604300|chr2:120608080-120614175
Splice length:
159
Other database IDs:
circBase: hsa_circ_0034870, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_14364
Human Ortholog IDs:
Mature spliced Sequence:
CCTCGTGCTGTGGCAGGCTTTCGAGGGACAGTTCGTTATGCATCAATCAATGCTCATCGGAACAGGGAAATGGGAAGACATGATGACCTTTGGTCTTTATTCTACATGTTGGTGGAGTTTGTGGTTGGCCAACTGCCTTGGAGAAAAATAAAGGACAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTGGAGTTTGTGGTTGGC
61.04
TTTCCCTGTTCCGATGAGCA
59.31
120
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTTGGTGGAGTTTGTGGTTGG
59.86
TTTCCCTGTTCCGATGAGCA
59.31
122
PCR template sequence:
TGATGACCTTTGGTCTTTATTCTACATGTTGGTGGAGTTTGTGGTTGGCCAACTGCCTTGGAGAAAAATAAAGGACAAGCCTCGTGCTGTGGCAGGCTTTCGAGGGACAGTTCGTTATGCATCAATCAATGCTCATCGGAACAGGGAAATGGGAAGAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AATAAAGGACAAGCCTCGTGCTGTGG
siRNA sets
ACAGCACGAGGCTTGTCCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCDAN1_159_ORF_1
0.6397
0.039056056
0.108668169
249
ORF sequence:
ATGGGAAGACATGATGACCTTTGGTCTTTATTCTACATGTTGGTGGAGTTTGTGGTTGGCCAACTGCCTTGGAGAAAAATAAAGGACAAGCCTCGTGCTGTGGCAGGCTTTCGAGGGACAGTTCGTTATGCATCAATCAATGCTCATCGGAACAGGGAAATGGGAAGACATGATGACCTTTGGTCTTTATTCTACATGTTGGTGGAGTTTGTGGTTGGCCAACTGCCTTGGAGAAAAATAAAGGACAAG
Peptide sequence:
MGRHDDLWSLFYMLVEFVVGQLPWRKIKDKPRAVAGFRGTVRYASINAHRNREMGRHDDLWSLFYMLVEFVVGQLPWRKIKDK
IRESfinder result
IRESfinder score
0.413405693
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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