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mmu_circCd36_986
Basic information of circular RNA
PanCircBase ID:
mmu_circCd36_986
mm39_Chr. Position ID:
chr5|18016178|18040669|-
Gene name:
Cd36
Transcript:
ENSMUST00000169095.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
9,8,7,6,5,4,3,2
Exon/intron offsets:
0,1832,2932,3492,9259,17594,18275,24437
Genomic length:
24491
Exon/intron sizes in nt:
47,92,180,148,161,210,94,54
Flanking exon/introns:
chr5:18003296-18016178|chr5:18040669-18093708
Splice length:
986
Other database IDs:
circAtlas: mmu-Cd36_0007
Human Ortholog IDs:
Mature spliced Sequence:
CTGCCTTCTGAAATGTGTGGAGCAACTGGTGGATGGTTTCCTAGCCTTTCAAAGGTAGTTTACAAATGATTTGAAGTGCTGATCCTTTCAGAGTCTCAACAGATTATTTCTTAAACAGCTCATACATTGCTGTTTATGCATGAATTAGTAGAACCGGGCCACGTAGAAAACACTGTGATTGTACCTGGGAGTTGGCGAGAAAACCAGTGCTCTCCCTTGATTCTGCTGCACGAGGAGAATGGGCTGTGATCGGAACTGTGGGCTCATTGCTGGAGCTGTTATTGGTGCAGTCCTGGCTGTGTTTGGAGGCATTCTCATGCCAGTCGGAGACATGCTTATTGAGAAGACAATCAAAAGGGAAGTTGTCCTTGAAGAAGGAACCACTGCTTTCAAAAACTGGGTTAAAACAGGCACCACTGTGTACAGACAGTTTTGGATCTTTGATGTGCAAAACCCAGATGACGTGGCAAAGAACAGCAGCAAAATCAAGGTTAAACAAAGAGGTCCTTACACATACAGAGTTCGTTATCTAGCCAAGGAAAATATAACTCAGGACCCCGAGGACCACACTGTGTCTTTTGTACAGCCCAATGGAGCCATCTTTGAGCCTTCACTGTCTGTTGGAACAGAGGATGACAACTTCACAGTTCTGAATCTGGCTGTAGCAGCTGCACCACATATCTACCAAAATTCATTTGTTCAAGTTGTGCTCAACTCTCTTATAAAAAAGTCCAAGTCTTCTATGTTCCAAACAAGATCTTTGAAAGAACTCTTGTGGGGTTACAAAGATCCATTCCTCAGTTTGGTTCCATATCCTATAAGTACCACAGTTGGTGTGTTTTATCCTTACAATGACACTGTAGATGGAGTTTATAAAGTTTTCAATGGAAAGGATAACATAAGCAAAGTTGCCATAATTGAGTCCTATAAAGGGAAAAGGAATTTGTCCTATTGGCCAAGCTATTGCGACATGATTAATGGCACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGAAAGGATAACATAAGCAAAGTTG
56.95
GAAACCATCCACCAGTTGCTC
59.46
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAAAGGATAACATAAGCAAAGTTG
56.95
GAAACCATCCACCAGTTGCT
58.38
140
PCR template sequence:
GGAAAGGATAACATAAGCAAAGTTGCCATAATTGAGTCCTATAAAGGGAAAAGGAATTTGTCCTATTGGCCAAGCTATTGCGACATGATTAATGGCACAGCTGCCTTCTGAAATGTGTGGAGCAACTGGTGGATGGTTTCCTAGCCTTTCAAAGGTAGTTTACAAATGATTTGAAGTGCTGATCCTTTCAGAGTCTCAAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-7b-5p(1), mmu-miR-211-5p(1), mmu-miR-217-5p(1), mmu-miR-7a-5p(1), mmu-miR-136-5p(1), mmu-miR-297a-5p(1), mmu-miR-690(1), mmu-miR-673-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTAATGGCACAGCTGCCTTCTGAAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCD36_986_ORF_1
0.9563
0.083009741
0.909353143
759
ORF sequence:
ATGGGCTGTGATCGGAACTGTGGGCTCATTGCTGGAGCTGTTATTGGTGCAGTCCTGGCTGTGTTTGGAGGCATTCTCATGCCAGTCGGAGACATGCTTATTGAGAAGACAATCAAAAGGGAAGTTGTCCTTGAAGAAGGAACCACTGCTTTCAAAAACTGGGTTAAAACAGGCACCACTGTGTACAGACAGTTTTGGATCTTTGATGTGCAAAACCCAGATGACGTGGCAAAGAACAGCAGCAAAATCAAGGTTAAACAAAGAGGTCCTTACACATACAGAGTTCGTTATCTAGCCAAGGAAAATATAACTCAGGACCCCGAGGACCACACTGTGTCTTTTGTACAGCCCAATGGAGCCATCTTTGAGCCTTCACTGTCTGTTGGAACAGAGGATGACAACTTCACAGTTCTGAATCTGGCTGTAGCAGCTGCACCACATATCTACCAAAATTCATTTGTTCAAGTTGTGCTCAACTCTCTTATAAAAAAGTCCAAGTCTTCTATGTTCCAAACAAGATCTTTGAAAGAACTCTTGTGGGGTTACAAAGATCCATTCCTCAGTTTGGTTCCATATCCTATAAGTACCACAGTTGGTGTGTTTTATCCTTACAATGACACTGTAGATGGAGTTTATAAAGTTTTCAATGGAAAGGATAACATAAGCAAAGTTGCCATAATTGAGTCCTATAAAGGGAAAAGGAATTTGTCCTATTGGCCAAGCTATTGCGACATGATTAATGGCACAGCTGCCTTCTGA
Peptide sequence:
MGCDRNCGLIAGAVIGAVLAVFGGILMPVGDMLIEKTIKREVVLEEGTTAFKNWVKTGTTVYRQFWIFDVQNPDDVAKNSSKIKVKQRGPYTYRVRYLAKENITQDPEDHTVSFVQPNGAIFEPSLSVGTEDDNFTVLNLAVAAAPHIYQNSFVQVVLNSLIKKSKSSMFQTRSLKELLWGYKDPFLSLVPYPISTTVGVFYPYNDTVDGVYKVFNGKDNISKVAIIESYKGKRNLSYWPSYCDMINGTAAF
IRESfinder result
IRESfinder score
0.721668819
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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