top of page
mmu_circCd36_377
Basic information of circular RNA
PanCircBase ID:
mmu_circCd36_377
mm39_Chr. Position ID:
chr5|18000576|18003296|-
Gene name:
Cd36
Transcript:
ENSMUST00000170051.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
11,10,9
Exon/intron offsets:
0,1417,2650
Genomic length:
2720
Exon/intron sizes in nt:
119,188,70
Flanking exon/introns:
chr5:17993323-18000576|chr5:18003296-18016178
Splice length:
377
Other database IDs:
CIRCpedia: MMU_CIRCpedia_213929, circAtlas: mmu-Cd36_0003
Human Ortholog IDs:
Mature spliced Sequence:
ACGCAGCCTCCTTTCCACCTTTTGTTGAAAAGTCTCGGACATTGAGATTCTTTTCCTCTGACATTTGCAGGTCTATCTACGCTGTGTTCGGATCTGAAATCGACCTTAAAGGAATCCCCGTGTACAGATTTGTTCTTCCAGCCAATGCCTTTGCATCACCCCTCCAGAATCCAGACAACCATTGTTTCTGCACTGAAAAAGTAATCTCCAATAACTGTACATCTTATGGTGTGCTAGACATTGGCAAATGCAAAGAAGGAAAGCCTGTGTATATTTCGCTTCCACATTTCCTACATGCAAGTCCAGATGTTTCAGAACCTATTGAAGGCTTACATCCAAATGAAGATGAGCATAGGACATACTTAGATGTGGAACCC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAAGTCCAGATGTTTCAGAACC
60.06
TTCAGATCCGAACACAGCGT
59.68
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCAAGTCCAGATGTTTCAGA
57.51
TTCAGATCCGAACACAGCGT
59.68
180
PCR template sequence:
GCTTCCACATTTCCTACATGCAAGTCCAGATGTTTCAGAACCTATTGAAGGCTTACATCCAAATGAAGATGAGCATAGGACATACTTAGATGTGGAACCCACGCAGCCTCCTTTCCACCTTTTGTTGAAAAGTCTCGGACATTGAGATTCTTTTCCTCTGACATTTGCAGGTCTATCTACGCTGTGTTCGGATCTGAAAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-152-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGATGTGGAACCCACGCAGCCTCCTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.700572796
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page