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mmu_circCc2d2b_2370
Basic information of circular RNA
PanCircBase ID:
mmu_circCc2d2b_2370
mm39_Chr. Position ID:
chr19|40746863|40797916|+
Gene name:
Cc2d2b
Transcript:
ENSMUST00000207801.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
17
Exon/intron indexes:
5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21
Exon/intron offsets:
0,1932,6930,7283,7522,12333,13840,15950,19626,19866,31889,32766,36135,37227,43934,50510,50855
Genomic length:
51053
Exon/intron sizes in nt:
6,68,41,99,13,71,29,21,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr19:40745995-40746863|chr19:40797916-40799025
Splice length:
2370
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATCAGTCAAGGTGAAAAGTCCTCAGCTGAGCCACTCACTGATACAAAGACTTATCGATGGTCTAAGACTGAAGTCTTGCTGGATGAAGGTCTTTCATTTTTCATCCTGAGTGGAGAAGAAGATTCAGCAGTGAGCCAGTCTTCGCAGCAGAAAACAGTAAGTGAGAGTTACTCCAAGCAATCTGCATCTGGTGGTGGTTTCCGAAACACTGCTGAGGGCCCAGATGAGGATTTTATGGAAGAAGTGATTTTAACGGATTTATTTGAAGTGAAAGCTGCAGATTATGAAGATGACCAAGAACAGATTAAAAAACAGGAGGCAAATATTTTTGTGCCAAGTAGTTCTCCAGTGGCCAGCCAGCAGAAACTGCCGAAAGGCATGCTCCCTCGAATTTTAGAAGACGAAGGGCTCTACGTTCAGAAAAAGCCAGAGACATATAAAAAGATCTGCAACAAAATGGAAAATCGCCTGCTCAGCCTGCAGGAGGGAAAATGTTGGTTTGAAGAAAGTGGAGAAATAATGTCATTGCCTTCACCTATTAGACCGTCTTGGAATTATAGGCTCTGCATGAGCAAGGAATCTTTGAATCCGGCACTAAAGACTATACACAGAAAGGCGGTGAAATCTGACGTGGGGTGCTGTTTTAGAGACAGGATGGATGGTCAGAGGGAAATGTACCAACTAGACCTTAACATCGTGGGCTTGCAGTTCAGCCACCACCCGCTCTTCAGTCAGGAACACGTCCTGTGTGCCAGGCTGCTCCGGCTCTGCGAGTCTTTGCAGGACAGGCAGAGGCAGAGCGTCTCTCAGCTGCTCTATGAGAAGCTGAGAGCCCTGAAGGATGCTACCAAACTAATAAGCAAAAACCCAGAATTAAGCCAATTTACCACAAAATCGCTACAAGATTATTATCGGCAGATAAGTGACACGAAGCAGCTGTATGAGGCCGAAAGGGAAAAGGACCACTCCCTGCTACACAGTGTCTTACAGACTTGGAAACAGATAAAATCTCTCCGGCAAAAGCAAGGATTTACAAGCACCCCAGTAAAGGTGCAGTTTCATAGGGTAAAAACGAACACGTGGGATGAGCAGAACCAAGCGGGAGTGTCAGAAGGACCTGGGGACGGAAGCGGAGAAACGCCACTTCAGAATGAAGACACAGAGGAGACTCTCTCCCATCCAGCCTCAGACCCTGAAGGAACGGAAGTTGAAAAAACAAAGCCAATTACTCTGGTGCCACAGCTTTCTTTCACAGCAGAATTGACAAACTTATCCAAGTGTTCATTTGTGCTGAGGAATGTTGACGCAAGAGGTGTTCCTGGACTGCCATGGATCGTGAACTCACAAAAGCTTTGTGAGTGGGCAGATGATGCCAGGATTGATCCACATAACCCAGACTACTCGGATATAACAGAACATATTATGTGTTTGAGACACAAAGGCCAGGAAATCCCCAAATATTTCCGTCTTGAGCAGTTGCAAGACGAATTTAACTTTGTGTCCGAGGAAGAAATGGAAAGGAGCAAACGCTTCCAGCTGTTGCAGCTGAGAAATGCAGGCCAGCTAGATCTCTTCCTCCTGCAGCCGATGCCCCTCTATGACAATGAGATTCCAGACATAGTCTTCCAGGTGAGAAGGTTGATCATGAAAAGAATCGTCAAAGTCAACAAATTTAACTTGTCAGATATTGTAGCTGACTATGAAGAAATTGTATCTACAAGCCAGCTGACAGATGCCATTTGTAAATTCATTGAACCACGACGGAAGTTAAAACCTCAGAGGAAAGAAAGAAGAAAAGTCACAGCCCAGAGCATCTCTGATGGAGATATGAAGATTCTTGTCAGGATCCTGAGGGCCTATAACATTCCTACCAGAAAAACAGTGTCTTATAGCTCACCAGGACATGATTACAGCTTCTCTAGTTTATCTAAAATAAAAGATAACATACATATCAACATTTTCGATGAAGTGGTGATTGAAAAACATGAGATTAGTGGGACATTTCAAGTGAACATCCCACCCATTTTGCTCGGGTATACCTGGAGTAACACCTACGTCCCTCCTAGAGAAGACTGCAGTGGGCAGAACCCCAAAGAATGTACCTTCCTAAACATTTTTGCTACGATTGAACCTCAGATATCATATGTCACGTACAATCCAAAAGTAGACGAGTTTTCAGACCAAATAGACATTCTACAACGAGCACAGACTTTTACCAGGAACTGTAAGGCCATGTTTCCCAACCGAAGAGTCGTGGCAACTGTTTTTAATGGTGAAGGAATGCACATCTTAGTCACCAGATACATCAAGGCCCTGAACCCGCCCCAGCAGCTTCTGGATATATTTCTTCATGACTCGAATGCAACGCTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TACATCAAGGCCCTGAACCC
59.38
AGACCTTCATCCAGCAAGACT
58.74
161
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TACATCAAGGCCCTGAACCC
59.38
ACCTTCATCCAGCAAGACTTCA
59.63
159
PCR template sequence:
TGGTGAAGGAATGCACATCTTAGTCACCAGATACATCAAGGCCCTGAACCCGCCCCAGCAGCTTCTGGATATATTTCTTCATGACTCGAATGCAACGCTTATCAGTCAAGGTGAAAAGTCCTCAGCTGAGCCACTCACTGATACAAAGACTTATCGATGGTCTAAGACTGAAGTCTTGCTGGATGAAGGTCTTTCATTTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
19
Interacting miRNAs (#binding sites)
mmu-miR-1904(2), mmu-miR-7b-5p(1), mmu-miR-205-5p(1), mmu-miR-204-5p(1), mmu-miR-7a-5p(1), mmu-miR-320-3p(1), mmu-miR-339-5p(1), mmu-miR-24-3p(1), mmu-miR-433-3p(1), mmu-miR-431-5p(1), mmu-miR-96-5p(1), mmu-miR-342-5p(1), mmu-miR-680(1), mmu-miR-1198-5p(1), mmu-miR-190b-5p(1), mmu-miR-335-3p(1), mmu-miR-350-3p(1), mmu-miR-146b-5p(1), mmu-miR-344-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GAATGCAACGCTTATCAGTCAAGGTG
siRNA sets
TTGACTGATAAGCGTTGCA, CTTGACTGATAAGCGTTGC, CACCTTGACTGATAAGCGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCC2D2B_2370_ORF_1
0.8735
0.161371992
1
4506
ORF sequence:
ATGGAAGAAGTGATTTTAACGGATTTATTTGAAGTGAAAGCTGCAGATTATGAAGATGACCAAGAACAGATTAAAAAACAGGAGGCAAATATTTTTGTGCCAAGTAGTTCTCCAGTGGCCAGCCAGCAGAAACTGCCGAAAGGCATGCTCCCTCGAATTTTAGAAGACGAAGGGCTCTACGTTCAGAAAAAGCCAGAGACATATAAAAAGATCTGCAACAAAATGGAAAATCGCCTGCTCAGCCTGCAGGAGGGAAAATGTTGGTTTGAAGAAAGTGGAGAAATAATGTCATTGCCTTCACCTATTAGACCGTCTTGGAATTATAGGCTCTGCATGAGCAAGGAATCTTTGAATCCGGCACTAAAGACTATACACAGAAAGGCGGTGAAATCTGACGTGGGGTGCTGTTTTAGAGACAGGATGGATGGTCAGAGGGAAATGTACCAACTAGACCTTAACATCGTGGGCTTGCAGTTCAGCCACCACCCGCTCTTCAGTCAGGAACACGTCCTGTGTGCCAGGCTGCTCCGGCTCTGCGAGTCTTTGCAGGACAGGCAGAGGCAGAGCGTCTCTCAGCTGCTCTATGAGAAGCTGAGAGCCCTGAAGGATGCTACCAAACTAATAAGCAAAAACCCAGAATTAAGCCAATTTACCACAAAATCGCTACAAGATTATTATCGGCAGATAAGTGACACGAAGCAGCTGTATGAGGCCGAAAGGGAAAAGGACCACTCCCTGCTACACAGTGTCTTACAGACTTGGAAACAGATAAAATCTCTCCGGCAAAAGCAAGGATTTACAAGCACCCCAGTAAAGGTGCAGTTTCATAGGGTAAAAACGAACACGTGGGATGAGCAGAACCAAGCGGGAGTGTCAGAAGGACCTGGGGACGGAAGCGGAGAAACGCCACTTCAGAATGAAGACACAGAGGAGACTCTCTCCCATCCAGCCTCAGACCCTGAAGGAACGGAAGTTGAAAAAACAAAGCCAATTACTCTGGTGCCACAGCTTTCTTTCACAGCAGAATTGACAAACTTATCCAAGTGTTCATTTGTGCTGAGGAATGTTGACGCAAGAGGTGTTCCTGGACTGCCATGGATCGTGAACTCACAAAAGCTTTGTGAGTGGGCAGATGATGCCAGGATTGATCCACATAACCCAGACTACTCGGATATAACAGAACATATTATGTGTTTGAGACACAAAGGCCAGGAAATCCCCAAATATTTCCGTCTTGAGCAGTTGCAAGACGAATTTAACTTTGTGTCCGAGGAAGAAATGGAAAGGAGCAAACGCTTCCAGCTGTTGCAGCTGAGAAATGCAGGCCAGCTAGATCTCTTCCTCCTGCAGCCGATGCCCCTCTATGACAATGAGATTCCAGACATAGTCTTCCAGGTGAGAAGGTTGATCATGAAAAGAATCGTCAAAGTCAACAAATTTAACTTGTCAGATATTGTAGCTGACTATGAAGAAATTGTATCTACAAGCCAGCTGACAGATGCCATTTGTAAATTCATTGAACCACGACGGAAGTTAAAACCTCAGAGGAAAGAAAGAAGAAAAGTCACAGCCCAGAGCATCTCTGATGGAGATATGAAGATTCTTGTCAGGATCCTGAGGGCCTATAACATTCCTACCAGAAAAACAGTGTCTTATAGCTCACCAGGACATGATTACAGCTTCTCTAGTTTATCTAAAATAAAAGATAACATACATATCAACATTTTCGATGAAGTGGTGATTGAAAAACATGAGATTAGTGGGACATTTCAAGTGAACATCCCACCCATTTTGCTCGGGTATACCTGGAGTAACACCTACGTCCCTCCTAGAGAAGACTGCAGTGGGCAGAACCCCAAAGAATGTACCTTCCTAAACATTTTTGCTACGATTGAACCTCAGATATCATATGTCACGTACAATCCAAAAGTAGACGAGTTTTCAGACCAAATAGACATTCTACAACGAGCACAGACTTTTACCAGGAACTGTAAGGCCATGTTTCCCAACCGAAGAGTCGTGGCAACTGTTTTTAATGGTGAAGGAATGCACATCTTAGTCACCAGATACATCAAGGCCCTGAACCCGCCCCAGCAGCTTCTGGATATATTTCTTCATGACTCGAATGCAACGCTTATCAGTCAAGGTGAAAAGTCCTCAGCTGAGCCACTCACTGATACAAAGACTTATCGATGGTCTAAGACTGAAGTCTTGCTGGATGAAGGTCTTTCATTTTTCATCCTGAGTGGAGAAGAAGATTCAGCAGTGAGCCAGTCTTCGCAGCAGAAAACAGTAAGTGAGAGTTACTCCAAGCAATCTGCATCTGGTGGTGGTTTCCGAAACACTGCTGAGGGCCCAGATGAGGATTTTATGGAAGAAGTGATTTTAACGGATTTATTTGAAGTGAAAGCTGCAGATTATGAAGATGACCAAGAACAGATTAAAAAACAGGAGGCAAATATTTTTGTGCCAAGTAGTTCTCCAGTGGCCAGCCAGCAGAAACTGCCGAAAGGCATGCTCCCTCGAATTTTAGAAGACGAAGGGCTCTACGTTCAGAAAAAGCCAGAGACATATAAAAAGATCTGCAACAAAATGGAAAATCGCCTGCTCAGCCTGCAGGAGGGAAAATGTTGGTTTGAAGAAAGTGGAGAAATAATGTCATTGCCTTCACCTATTAGACCGTCTTGGAATTATAGGCTCTGCATGAGCAAGGAATCTTTGAATCCGGCACTAAAGACTATACACAGAAAGGCGGTGAAATCTGACGTGGGGTGCTGTTTTAGAGACAGGATGGATGGTCAGAGGGAAATGTACCAACTAGACCTTAACATCGTGGGCTTGCAGTTCAGCCACCACCCGCTCTTCAGTCAGGAACACGTCCTGTGTGCCAGGCTGCTCCGGCTCTGCGAGTCTTTGCAGGACAGGCAGAGGCAGAGCGTCTCTCAGCTGCTCTATGAGAAGCTGAGAGCCCTGAAGGATGCTACCAAACTAATAAGCAAAAACCCAGAATTAAGCCAATTTACCACAAAATCGCTACAAGATTATTATCGGCAGATAAGTGACACGAAGCAGCTGTATGAGGCCGAAAGGGAAAAGGACCACTCCCTGCTACACAGTGTCTTACAGACTTGGAAACAGATAAAATCTCTCCGGCAAAAGCAAGGATTTACAAGCACCCCAGTAAAGGTGCAGTTTCATAGGGTAAAAACGAACACGTGGGATGAGCAGAACCAAGCGGGAGTGTCAGAAGGACCTGGGGACGGAAGCGGAGAAACGCCACTTCAGAATGAAGACACAGAGGAGACTCTCTCCCATCCAGCCTCAGACCCTGAAGGAACGGAAGTTGAAAAAACAAAGCCAATTACTCTGGTGCCACAGCTTTCTTTCACAGCAGAATTGACAAACTTATCCAAGTGTTCATTTGTGCTGAGGAATGTTGACGCAAGAGGTGTTCCTGGACTGCCATGGATCGTGAACTCACAAAAGCTTTGTGAGTGGGCAGATGATGCCAGGATTGATCCACATAACCCAGACTACTCGGATATAACAGAACATATTATGTGTTTGAGACACAAAGGCCAGGAAATCCCCAAATATTTCCGTCTTGAGCAGTTGCAAGACGAATTTAACTTTGTGTCCGAGGAAGAAATGGAAAGGAGCAAACGCTTCCAGCTGTTGCAGCTGAGAAATGCAGGCCAGCTAGATCTCTTCCTCCTGCAGCCGATGCCCCTCTATGACAATGAGATTCCAGACATAGTCTTCCAGGTGAGAAGGTTGATCATGAAAAGAATCGTCAAAGTCAACAAATTTAACTTGTCAGATATTGTAGCTGACTATGAAGAAATTGTATCTACAAGCCAGCTGACAGATGCCATTTGTAAATTCATTGAACCACGACGGAAGTTAAAACCTCAGAGGAAAGAAAGAAGAAAAGTCACAGCCCAGAGCATCTCTGATGGAGATATGAAGATTCTTGTCAGGATCCTGAGGGCCTATAACATTCCTACCAGAAAAACAGTGTCTTATAGCTCACCAGGACATGATTACAGCTTCTCTAGTTTATCTAAAATAAAAGATAACATACATATCAACATTTTCGATGAAGTGGTGATTGAAAAACATGAGATTAGTGGGACATTTCAAGTGAACATCCCACCCATTTTGCTCGGGTATACCTGGAGTAACACCTACGTCCCTCCTAGAGAAGACTGCAGTGGGCAGAACCCCAAAGAATGTACCTTCCTAAACATTTTTGCTACGATTGAACCTCAGATATCATATGTCACGTACAATCCAAAAGTAGACGAGTTTTCAGACCAAATAGACATTCTACAACGAGCACAGACTTTTACCAGGAACTGTAAGGCCATGTTTCCCAACCGAAGAGTCGTGGCAACTGTTTTTAATGGTGAAGGAATGCACATCTTAGTCACCAGATACATCAAGGCCCTGAACCCGCCCCAGCAGCTTCTGGATATATTTCTTCATGACTCGAATGCAACGCTT
Peptide sequence:
MEEVILTDLFEVKAADYEDDQEQIKKQEANIFVPSSSPVASQQKLPKGMLPRILEDEGLYVQKKPETYKKICNKMENRLLSLQEGKCWFEESGEIMSLPSPIRPSWNYRLCMSKESLNPALKTIHRKAVKSDVGCCFRDRMDGQREMYQLDLNIVGLQFSHHPLFSQEHVLCARLLRLCESLQDRQRQSVSQLLYEKLRALKDATKLISKNPELSQFTTKSLQDYYRQISDTKQLYEAEREKDHSLLHSVLQTWKQIKSLRQKQGFTSTPVKVQFHRVKTNTWDEQNQAGVSEGPGDGSGETPLQNEDTEETLSHPASDPEGTEVEKTKPITLVPQLSFTAELTNLSKCSFVLRNVDARGVPGLPWIVNSQKLCEWADDARIDPHNPDYSDITEHIMCLRHKGQEIPKYFRLEQLQDEFNFVSEEEMERSKRFQLLQLRNAGQLDLFLLQPMPLYDNEIPDIVFQVRRLIMKRIVKVNKFNLSDIVADYEEIVSTSQLTDAICKFIEPRRKLKPQRKERRKVTAQSISDGDMKILVRILRAYNIPTRKTVSYSSPGHDYSFSSLSKIKDNIHINIFDEVVIEKHEISGTFQVNIPPILLGYTWSNTYVPPREDCSGQNPKECTFLNIFATIEPQISYVTYNPKVDEFSDQIDILQRAQTFTRNCKAMFPNRRVVATVFNGEGMHILVTRYIKALNPPQQLLDIFLHDSNATLISQGEKSSAEPLTDTKTYRWSKTEVLLDEGLSFFILSGEEDSAVSQSSQQKTVSESYSKQSASGGGFRNTAEGPDEDFMEEVILTDLFEVKAADYEDDQEQIKKQEANIFVPSSSPVASQQKLPKGMLPRILEDEGLYVQKKPETYKKICNKMENRLLSLQEGKCWFEESGEIMSLPSPIRPSWNYRLCMSKESLNPALKTIHRKAVKSDVGCCFRDRMDGQREMYQLDLNIVGLQFSHHPLFSQEHVLCARLLRLCESLQDRQRQSVSQLLYEKLRALKDATKLISKNPELSQFTTKSLQDYYRQISDTKQLYEAEREKDHSLLHSVLQTWKQIKSLRQKQGFTSTPVKVQFHRVKTNTWDEQNQAGVSEGPGDGSGETPLQNEDTEETLSHPASDPEGTEVEKTKPITLVPQLSFTAELTNLSKCSFVLRNVDARGVPGLPWIVNSQKLCEWADDARIDPHNPDYSDITEHIMCLRHKGQEIPKYFRLEQLQDEFNFVSEEEMERSKRFQLLQLRNAGQLDLFLLQPMPLYDNEIPDIVFQVRRLIMKRIVKVNKFNLSDIVADYEEIVSTSQLTDAICKFIEPRRKLKPQRKERRKVTAQSISDGDMKILVRILRAYNIPTRKTVSYSSPGHDYSFSSLSKIKDNIHINIFDEVVIEKHEISGTFQVNIPPILLGYTWSNTYVPPREDCSGQNPKECTFLNIFATIEPQISYVTYNPKVDEFSDQIDILQRAQTFTRNCKAMFPNRRVVATVFNGEGMHILVTRYIKALNPPQQLLDIFLHDSNATL
IRESfinder result
IRESfinder score
0.54539692
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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