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mmu_circCc2d2b_2049
Basic information of circular RNA
PanCircBase ID:
mmu_circCc2d2b_2049
mm39_Chr. Position ID:
chr19|40753793|40781320|+
Gene name:
Cc2d2b
Transcript:
ENSMUST00000224596.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
14
Exon/intron indexes:
7,8,9,10,11,12,13,14,15,16,17,18,19,20
Exon/intron offsets:
0,353,592,5403,6910,9020,12696,12936,19596,20574,22951,24959,25836,27434
Genomic length:
27527
Exon/intron sizes in nt:
199,137,129,210,98,141,103,119,178,151,148,139,204,93
Flanking exon/introns:
chr19:40748879-40753793|chr19:40781320-40782998
Splice length:
2049
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AAAACAGTAAGTGAGAGTTACTCCAAGCAATCTGCATCTGGTGGTGGTTTCCGAAACACTGCTGAGGGCCCAGATGAGGATTTTATGGAAGAAGTGATTTTAACGGATTTATTTGAAGTGAAAGCTGCAGATTATGAAGATGACCAAGAACAGATTAAAAAACAGGAGGCAAATATTTTTGTGCCAAGTAGTTCTCCAGTGGCCAGCCAGCAGAAACTGCCGAAAGGCATGCTCCCTCGAATTTTAGAAGACGAAGGGCTCTACGTTCAGAAAAAGCCAGAGACATATAAAAAGATCTGCAACAAAATGGAAAATCGCCTGCTCAGCCTGCAGGAGGGAAAATGTTGGTTTGAAGAAAGTGGAGAAATAATGTCATTGCCTTCACCTATTAGACCGTCTTGGAATTATAGGCTCTGCATGAGCAAGGAATCTTTGAATCCGGCACTAAAGACTATACACAGAAAGGCGGTGAAATCTGACGTGGGGTGCTGTTTTAGAGACAGGATGGATGGTCAGAGGGAAATGTACCAACTAGACCTTAACATCGTGGGCTTGCAGTTCAGCCACCACCCGCTCTTCAGTCAGGAACACGTCCTGTGTGCCAGGCTGCTCCGGCTCTGCGAGTCTTTGCAGGACAGGCAGAGGCAGAGCGTCTCTCAGCTGCTCTATGAGAAGCTGAGAGCCCTGAAGGATGCTACCAAACTAATAAGCAAAAACCCAGAATTAAGCCAATTTACCACAAAATCGCTACAAGATTATTATCGGCAGATAAGTGACACGAAGCAGCTGTATGAGGCCGAAAGGGAAAAGGACCACTCCCTGCTACACAGTGTCTTACAGACTTGGAAACAGATAAAATCTCTCCGGCAAAAGCAAGGATTTACAAGCACCCCAGTAAAGGTGCAGTTTCATAGGGTAAAAACGAACACGTGGGATGAGCAGAACCAAGCGGGAGTGTCAGAAGGACCTGGGGACGGAAGCGGAGAAACGCCACTTCAGAATGAAGACACAGAGGAGACTCTCTCCCATCCAGCCTCAGACCCTGAAGGAACGGAAGTTGAAAAAACAAAGCCAATTACTCTGGTGCCACAGCTTTCTTTCACAGCAGAATTGACAAACTTATCCAAGTGTTCATTATATGAGCAAAAGAGGAGAGCCAAAATGCAGAAGCTTAAATATTTTATCAAAATATTTTACAACAATAAACAGGTTTCTCGCACCTCAGTATCTCCCCTACAGTTTGACTTTAAAGTCATGTTTCAACAAATTTTTAACATTCAGCTGATATATTGGCCGGAAACAATCTGCTTGGAGGTTTATGAAGTAAGTAAAAGGTCAACTTTACTGGTTAAACTGTATCTGCCTTTACCTAACAAGACAGAGCTGAAAGGCAAGACTGTCCTGGAATATACAGAATTTAGTTCTGATAAACTGGTCATACCTATGGACGGAGGCGTAGGAAGCAATGTGCCTTTTAATCTCAAGGAAAGTGAGGATGAAGAACTCTGCCTTTTAACCTCAGGGAAACTTAGCTACTCCCTCTCATGGGCCTTAGATGAAAATGGAATCCCCCTGACACCCGTGTCGCAGTCGCTGAGCTCTGCATACTGTAGTGTGCTGAGGAATGTTGACGCAAGAGGTGTTCCTGGACTGCCATGGATCGTGAACTCACAAAAGCTTTGTGAGTGGGCAGATGATGCCAGGATTGATCCACATAACCCAGACTACTCGGATATAACAGAACATATTATGTGTTTGAGACACAAAGGCCAGGAAATCCCCAAATATTTCCGTCTTGAGCAGTTGCAAGACGAATTTAACTTTGTGTCCGAGGAAGAAATGGAAAGGAGCAAACGCTTCCAGCTGTTGCAGCTGAGAAATGCAGGCCAGCTAGATCTCTTCCTCCTGCAGCCGATGCCCCTCTATGACAATGAGATTCCAGACATAGTCTTCCAGGAGTATGAAAGTCAGGCACAGAAGGATATACCCATTTCAGATGTGAACTCTATTACTGCCCAAAGGATTAATTCTGTCAATTTTCTGAAAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAAAGTCAGGCACAGAAGGA
59.23
GCAGTGTTTCGGAAACCACC
59.97
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAAAGTCAGGCACAGAAGGA
59.23
TGTTTCGGAAACCACCACCA
60.03
146
PCR template sequence:
CTTCCAGGAGTATGAAAGTCAGGCACAGAAGGATATACCCATTTCAGATGTGAACTCTATTACTGCCCAAAGGATTAATTCTGTCAATTTTCTGAAAAAGAAAACAGTAAGTGAGAGTTACTCCAAGCAATCTGCATCTGGTGGTGGTTTCCGAAACACTGCTGAGGGCCCAGATGAGGATTTTATGGAAGAAGTGATTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-1904(2), mmu-miR-146b-5p(2), mmu-miR-7b-5p(1), mmu-miR-204-5p(1), mmu-miR-7a-5p(1), mmu-miR-320-3p(1), mmu-miR-339-5p(1), mmu-miR-139-5p(1), mmu-miR-431-5p(1), mmu-miR-96-5p(1), mmu-miR-342-5p(1), mmu-miR-1198-5p(1), mmu-miR-335-3p(1), mmu-miR-350-3p(1), mmu-miR-670-5p(1), mmu-miR-544-5p(1), mmu-miR-344-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTCTGAAAAAGAAAACAGTAAGTG
siRNA sets
ACTTACTGTTTTCTTTTTC, CTTACTGTTTTCTTTTTCA, TTACTGTTTTCTTTTTCAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCC2D2B_2049_ORF_1
0.9144
0.137915056
1
4014
ORF sequence:
ATGGAAGAAGTGATTTTAACGGATTTATTTGAAGTGAAAGCTGCAGATTATGAAGATGACCAAGAACAGATTAAAAAACAGGAGGCAAATATTTTTGTGCCAAGTAGTTCTCCAGTGGCCAGCCAGCAGAAACTGCCGAAAGGCATGCTCCCTCGAATTTTAGAAGACGAAGGGCTCTACGTTCAGAAAAAGCCAGAGACATATAAAAAGATCTGCAACAAAATGGAAAATCGCCTGCTCAGCCTGCAGGAGGGAAAATGTTGGTTTGAAGAAAGTGGAGAAATAATGTCATTGCCTTCACCTATTAGACCGTCTTGGAATTATAGGCTCTGCATGAGCAAGGAATCTTTGAATCCGGCACTAAAGACTATACACAGAAAGGCGGTGAAATCTGACGTGGGGTGCTGTTTTAGAGACAGGATGGATGGTCAGAGGGAAATGTACCAACTAGACCTTAACATCGTGGGCTTGCAGTTCAGCCACCACCCGCTCTTCAGTCAGGAACACGTCCTGTGTGCCAGGCTGCTCCGGCTCTGCGAGTCTTTGCAGGACAGGCAGAGGCAGAGCGTCTCTCAGCTGCTCTATGAGAAGCTGAGAGCCCTGAAGGATGCTACCAAACTAATAAGCAAAAACCCAGAATTAAGCCAATTTACCACAAAATCGCTACAAGATTATTATCGGCAGATAAGTGACACGAAGCAGCTGTATGAGGCCGAAAGGGAAAAGGACCACTCCCTGCTACACAGTGTCTTACAGACTTGGAAACAGATAAAATCTCTCCGGCAAAAGCAAGGATTTACAAGCACCCCAGTAAAGGTGCAGTTTCATAGGGTAAAAACGAACACGTGGGATGAGCAGAACCAAGCGGGAGTGTCAGAAGGACCTGGGGACGGAAGCGGAGAAACGCCACTTCAGAATGAAGACACAGAGGAGACTCTCTCCCATCCAGCCTCAGACCCTGAAGGAACGGAAGTTGAAAAAACAAAGCCAATTACTCTGGTGCCACAGCTTTCTTTCACAGCAGAATTGACAAACTTATCCAAGTGTTCATTATATGAGCAAAAGAGGAGAGCCAAAATGCAGAAGCTTAAATATTTTATCAAAATATTTTACAACAATAAACAGGTTTCTCGCACCTCAGTATCTCCCCTACAGTTTGACTTTAAAGTCATGTTTCAACAAATTTTTAACATTCAGCTGATATATTGGCCGGAAACAATCTGCTTGGAGGTTTATGAAGTAAGTAAAAGGTCAACTTTACTGGTTAAACTGTATCTGCCTTTACCTAACAAGACAGAGCTGAAAGGCAAGACTGTCCTGGAATATACAGAATTTAGTTCTGATAAACTGGTCATACCTATGGACGGAGGCGTAGGAAGCAATGTGCCTTTTAATCTCAAGGAAAGTGAGGATGAAGAACTCTGCCTTTTAACCTCAGGGAAACTTAGCTACTCCCTCTCATGGGCCTTAGATGAAAATGGAATCCCCCTGACACCCGTGTCGCAGTCGCTGAGCTCTGCATACTGTAGTGTGCTGAGGAATGTTGACGCAAGAGGTGTTCCTGGACTGCCATGGATCGTGAACTCACAAAAGCTTTGTGAGTGGGCAGATGATGCCAGGATTGATCCACATAACCCAGACTACTCGGATATAACAGAACATATTATGTGTTTGAGACACAAAGGCCAGGAAATCCCCAAATATTTCCGTCTTGAGCAGTTGCAAGACGAATTTAACTTTGTGTCCGAGGAAGAAATGGAAAGGAGCAAACGCTTCCAGCTGTTGCAGCTGAGAAATGCAGGCCAGCTAGATCTCTTCCTCCTGCAGCCGATGCCCCTCTATGACAATGAGATTCCAGACATAGTCTTCCAGGAGTATGAAAGTCAGGCACAGAAGGATATACCCATTTCAGATGTGAACTCTATTACTGCCCAAAGGATTAATTCTGTCAATTTTCTGAAAAAGAAAACAGTAAGTGAGAGTTACTCCAAGCAATCTGCATCTGGTGGTGGTTTCCGAAACACTGCTGAGGGCCCAGATGAGGATTTTATGGAAGAAGTGATTTTAACGGATTTATTTGAAGTGAAAGCTGCAGATTATGAAGATGACCAAGAACAGATTAAAAAACAGGAGGCAAATATTTTTGTGCCAAGTAGTTCTCCAGTGGCCAGCCAGCAGAAACTGCCGAAAGGCATGCTCCCTCGAATTTTAGAAGACGAAGGGCTCTACGTTCAGAAAAAGCCAGAGACATATAAAAAGATCTGCAACAAAATGGAAAATCGCCTGCTCAGCCTGCAGGAGGGAAAATGTTGGTTTGAAGAAAGTGGAGAAATAATGTCATTGCCTTCACCTATTAGACCGTCTTGGAATTATAGGCTCTGCATGAGCAAGGAATCTTTGAATCCGGCACTAAAGACTATACACAGAAAGGCGGTGAAATCTGACGTGGGGTGCTGTTTTAGAGACAGGATGGATGGTCAGAGGGAAATGTACCAACTAGACCTTAACATCGTGGGCTTGCAGTTCAGCCACCACCCGCTCTTCAGTCAGGAACACGTCCTGTGTGCCAGGCTGCTCCGGCTCTGCGAGTCTTTGCAGGACAGGCAGAGGCAGAGCGTCTCTCAGCTGCTCTATGAGAAGCTGAGAGCCCTGAAGGATGCTACCAAACTAATAAGCAAAAACCCAGAATTAAGCCAATTTACCACAAAATCGCTACAAGATTATTATCGGCAGATAAGTGACACGAAGCAGCTGTATGAGGCCGAAAGGGAAAAGGACCACTCCCTGCTACACAGTGTCTTACAGACTTGGAAACAGATAAAATCTCTCCGGCAAAAGCAAGGATTTACAAGCACCCCAGTAAAGGTGCAGTTTCATAGGGTAAAAACGAACACGTGGGATGAGCAGAACCAAGCGGGAGTGTCAGAAGGACCTGGGGACGGAAGCGGAGAAACGCCACTTCAGAATGAAGACACAGAGGAGACTCTCTCCCATCCAGCCTCAGACCCTGAAGGAACGGAAGTTGAAAAAACAAAGCCAATTACTCTGGTGCCACAGCTTTCTTTCACAGCAGAATTGACAAACTTATCCAAGTGTTCATTATATGAGCAAAAGAGGAGAGCCAAAATGCAGAAGCTTAAATATTTTATCAAAATATTTTACAACAATAAACAGGTTTCTCGCACCTCAGTATCTCCCCTACAGTTTGACTTTAAAGTCATGTTTCAACAAATTTTTAACATTCAGCTGATATATTGGCCGGAAACAATCTGCTTGGAGGTTTATGAAGTAAGTAAAAGGTCAACTTTACTGGTTAAACTGTATCTGCCTTTACCTAACAAGACAGAGCTGAAAGGCAAGACTGTCCTGGAATATACAGAATTTAGTTCTGATAAACTGGTCATACCTATGGACGGAGGCGTAGGAAGCAATGTGCCTTTTAATCTCAAGGAAAGTGAGGATGAAGAACTCTGCCTTTTAACCTCAGGGAAACTTAGCTACTCCCTCTCATGGGCCTTAGATGAAAATGGAATCCCCCTGACACCCGTGTCGCAGTCGCTGAGCTCTGCATACTGTAGTGTGCTGAGGAATGTTGACGCAAGAGGTGTTCCTGGACTGCCATGGATCGTGAACTCACAAAAGCTTTGTGAGTGGGCAGATGATGCCAGGATTGATCCACATAACCCAGACTACTCGGATATAACAGAACATATTATGTGTTTGAGACACAAAGGCCAGGAAATCCCCAAATATTTCCGTCTTGAGCAGTTGCAAGACGAATTTAACTTTGTGTCCGAGGAAGAAATGGAAAGGAGCAAACGCTTCCAGCTGTTGCAGCTGAGAAATGCAGGCCAGCTAGATCTCTTCCTCCTGCAGCCGATGCCCCTCTATGACAATGAGATTCCAGACATAGTCTTCCAGGAGTATGAAAGTCAGGCACAGAAGGATATACCCATTTCAGATGTGAACTCTATTACTGCCCAAAGGATTAATTCTGTCAATTTTCTGAAAAAG
Peptide sequence:
MEEVILTDLFEVKAADYEDDQEQIKKQEANIFVPSSSPVASQQKLPKGMLPRILEDEGLYVQKKPETYKKICNKMENRLLSLQEGKCWFEESGEIMSLPSPIRPSWNYRLCMSKESLNPALKTIHRKAVKSDVGCCFRDRMDGQREMYQLDLNIVGLQFSHHPLFSQEHVLCARLLRLCESLQDRQRQSVSQLLYEKLRALKDATKLISKNPELSQFTTKSLQDYYRQISDTKQLYEAEREKDHSLLHSVLQTWKQIKSLRQKQGFTSTPVKVQFHRVKTNTWDEQNQAGVSEGPGDGSGETPLQNEDTEETLSHPASDPEGTEVEKTKPITLVPQLSFTAELTNLSKCSLYEQKRRAKMQKLKYFIKIFYNNKQVSRTSVSPLQFDFKVMFQQIFNIQLIYWPETICLEVYEVSKRSTLLVKLYLPLPNKTELKGKTVLEYTEFSSDKLVIPMDGGVGSNVPFNLKESEDEELCLLTSGKLSYSLSWALDENGIPLTPVSQSLSSAYCSVLRNVDARGVPGLPWIVNSQKLCEWADDARIDPHNPDYSDITEHIMCLRHKGQEIPKYFRLEQLQDEFNFVSEEEMERSKRFQLLQLRNAGQLDLFLLQPMPLYDNEIPDIVFQEYESQAQKDIPISDVNSITAQRINSVNFLKKKTVSESYSKQSASGGGFRNTAEGPDEDFMEEVILTDLFEVKAADYEDDQEQIKKQEANIFVPSSSPVASQQKLPKGMLPRILEDEGLYVQKKPETYKKICNKMENRLLSLQEGKCWFEESGEIMSLPSPIRPSWNYRLCMSKESLNPALKTIHRKAVKSDVGCCFRDRMDGQREMYQLDLNIVGLQFSHHPLFSQEHVLCARLLRLCESLQDRQRQSVSQLLYEKLRALKDATKLISKNPELSQFTTKSLQDYYRQISDTKQLYEAEREKDHSLLHSVLQTWKQIKSLRQKQGFTSTPVKVQFHRVKTNTWDEQNQAGVSEGPGDGSGETPLQNEDTEETLSHPASDPEGTEVEKTKPITLVPQLSFTAELTNLSKCSLYEQKRRAKMQKLKYFIKIFYNNKQVSRTSVSPLQFDFKVMFQQIFNIQLIYWPETICLEVYEVSKRSTLLVKLYLPLPNKTELKGKTVLEYTEFSSDKLVIPMDGGVGSNVPFNLKESEDEELCLLTSGKLSYSLSWALDENGIPLTPVSQSLSSAYCSVLRNVDARGVPGLPWIVNSQKLCEWADDARIDPHNPDYSDITEHIMCLRHKGQEIPKYFRLEQLQDEFNFVSEEEMERSKRFQLLQLRNAGQLDLFLLQPMPLYDNEIPDIVFQEYESQAQKDIPISDVNSITAQRINSVNFLKK
IRESfinder result
IRESfinder score
0.579832367
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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