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mmu_circCatspere2_103
Basic information of circular RNA
PanCircBase ID:
mmu_circCatspere2_103
mm39_Chr. Position ID:
chr1|177867874|177874563|+
Gene name:
Catspere2
Transcript:
ENSMUST00000191719.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
6,7
Exon/intron offsets:
0,6611
Genomic length:
6689
Exon/intron sizes in nt:
25,78
Flanking exon/introns:
chr1:177845307-177867874|chr1:177874563-177898094
Splice length:
103
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AGACGTTTATTACAACTTAAGCCAGATTGTCACCATATGGGTGTATGATCCAGAAAGTGCCAGCACTGAAGAGCTGATAAGGACCGCAAAGAAACCTTCACTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAAGAGCTGATAAGGACCGCA
59.86
TGGTGACAATCTGGCTTAAGT
57.21
71
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAAGAGCTGATAAGGACCGC
59.86
TGGTGACAATCTGGCTTAAGT
57.21
72
PCR template sequence:
GAAAGTGCCAGCACTGAAGAGCTGATAAGGACCGCAAAGAAACCTTCACTGAGACGTTTATTACAACTTAAGCCAGATTGTCACCATATGGGTGTATGATCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GAAACCTTCACTGAGACGTTTATTAC
siRNA sets
ATAAACGTCTCAGTGAAGG, TAAACGTCTCAGTGAAGGT, AATAAACGTCTCAGTGAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.473235249
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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