top of page
mmu_circCamsap1_379
Basic information of circular RNA
PanCircBase ID:
mmu_circCamsap1_379
mm39_Chr. Position ID:
chr2|25834953|25842831|-
Gene name:
Camsap1
Transcript:
ENSMUST00000091268.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
7,6,5
Exon/intron offsets:
0,192,7736
Genomic length:
7878
Exon/intron sizes in nt:
9,71,40,142
Flanking exon/introns:
chr2:25834615-25834953|chr2:25842831-25846258
Splice length:
379
Other database IDs:
circBase: hsa_circ_0089487, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_63390
Human Ortholog IDs:
Mature spliced Sequence:
GTCCGTTATCGGCGAGAGCACCTCTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAGCAGTGGTTCACTATTATTGCCCAGAGCAGATGAAACTGGATGATATCTGTCTGAAGGAGGTGCCATCAATGGCTGACAGCCTCTATAACATCCGCCTTCTGAGGGAGTTTTCCAACGAGCATCTGAACAAGTGTTTCTATCTCACGCTGGAGGATATGCTGTATGCCCCCCTAGTGCTGAAGCCGAACGTTATGGTTTTTATCGCTGAGCTCTTCTGGTGGTTTGAGAACGTCAAACCAGATTTTGTTCAGCCCCGAGATATTCAAGAGCTGAAGGATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGAGCTCTTCTGGTGGTT
59.96
CTAAGAGAGCAGCGCCATCA
59.9
176
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGAGCTCTTCTGGTGGTT
59.96
CAAGTCCTCCAACAACGGGA
59.89
142
PCR template sequence:
AAGCCGAACGTTATGGTTTTTATCGCTGAGCTCTTCTGGTGGTTTGAGAACGTCAAACCAGATTTTGTTCAGCCCCGAGATATTCAAGAGCTGAAGGATGGTCCGTTATCGGCGAGAGCACCTCTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-134-5p(1), mmu-miR-503-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GAGCTGAAGGATGGTCCGTTATCGGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCCAMSAP1_379_ORF_1
1.1901
0.338221816
0.747362876
381
ORF sequence:
ATGGTCCGTTATCGGCGAGAGCACCTCTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAGCAGTGGTTCACTATTATTGCCCAGAGCAGATGAAACTGGATGATATCTGTCTGAAGGAGGTGCCATCAATGGCTGACAGCCTCTATAACATCCGCCTTCTGAGGGAGTTTTCCAACGAGCATCTGAACAAGTGTTTCTATCTCACGCTGGAGGATATGCTGTATGCCCCCCTAGTGCTGAAGCCGAACGTTATGGTTTTTATCGCTGAGCTCTTCTGGTGGTTTGAGAACGTCAAACCAGATTTTGTTCAGCCCCGAGATATTCAAGAGCTGAAGGAT
Peptide sequence:
MVRYRREHLSARQSPYFPLLEDLMRDGSDGAALLAVVHYYCPEQMKLDDICLKEVPSMADSLYNIRLLREFSNEHLNKCFYLTLEDMLYAPLVLKPNVMVFIAELFWWFENVKPDFVQPRDIQELKD
IRESfinder result
IRESfinder score
0.492423095
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page