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mmu_circBtbd7_959
Basic information of circular RNA
PanCircBase ID:
mmu_circBtbd7_959
mm39_Chr. Position ID:
chr12|102756963|102779102|-
Gene name:
Btbd7
Transcript:
ENSMUST00000223554.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
10,9,8,7,6,5
Exon/intron offsets:
0,3041,4468,17195,20415,21930
Genomic length:
22139
Exon/intron sizes in nt:
179,190,144,161,76,209
Flanking exon/introns:
chr12:102754643-102756963|chr12:102779102-102803876
Splice length:
959
Other database IDs:
circBase: mmu_circ_0003672, CIRCpedia: MMU_CIRCpedia_772, circAtlas: mmu-Btbd7_0008
circAtlas: hsa-BTBD7_0008, CIRCpedia: HSA_CIRCpedia_370718
Human Ortholog IDs:
Mature spliced Sequence:
GCTGTGAGGACATCATTGCTGAGAGCATCTCATTAGACACCTTAATTGCCGTCCTCAAGTGGAGCTCGCATCCATACGGCTCTAAGTGGGTGCACCGACAAGCTGTGCATTTCCTGTGTGAGGAGCTATCCCAGGTCATGACTTCGGATGTTTTTTATGAACTGAGCAAAGACCATCTGCTTACTGCTATCCAGTCTGACTACCTACAGGCAAGCGAACAAGATATCCTTAAATATCTGATTAAATGGGGTGAGCATCAGTTGATGAAAAGAATAGCAGACAGAGAGCCAAACTTACTGAGTGGCACTGCACATAGTGTGAACAAAAGAGGTGTGAAGAGAAGAGACCTGGACATAGAAGAACTTAGAGAGATCCTTTCTTCTCTCTTGCCTTTTGTGCGGATTGAACACATCCTACCTATAAACAGTGAGGTCTTAAGTGATGCAATGAAAAGAGGCTTGATCAGCACGCCGCCATCAGACATGCTTCCTACAGCAGAGGGCGGGAAATCAAACGCCTGGCTGCGGCAGAAGAACGCTGGCATATATGTTCGTCCTCGGCTGTTTTCTCCCTATGTGGAGGAAGCAAAGTCAGTGCTGGATGAGATGATGGTGGAACAGACAGACCTGGTGCGACTGCGAATGGTGCGCATGTCCAATGTCCCAGACACACTCTACATGGTCAGCAATGCCATGCCCCAGTGCTGCCACATGATCAGCCACCAGCAGATCAGCAGTAACCAGTCGAGCCCTCCATCAGTTGTAGCCAATGAGATCCCAGTTCCTCGTCTCCTCATTATGAAGGATATGGTGAGGCGCCTGCAGGAACTGCGGCACACAGAGCAGGTGCAGAGAGCCTATGCACTGAACTGTGGGGAAGGTGCCACCGTCAGCTATGAAATCCAGATCCGAGTGCTCAGAGAGTTTGGTCTTGCAGACGCCGCTGCAGAGCTCCTACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCACTGAACTGTGGGGAAG
60.18
CTCCACTTGAGGACGGCAAT
60.04
164
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCACCGTCAGCTATGAAA
59.68
CTCCACTTGAGGACGGCAAT
60.04
143
PCR template sequence:
TGCACTGAACTGTGGGGAAGGTGCCACCGTCAGCTATGAAATCCAGATCCGAGTGCTCAGAGAGTTTGGTCTTGCAGACGCCGCTGCAGAGCTCCTACAGGCTGTGAGGACATCATTGCTGAGAGCATCTCATTAGACACCTTAATTGCCGTCCTCAAGTGGAGCTCGCATCCATACGGCTCTAAGTGGGTGCACCGACA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-335-3p(2), mmu-let-7a-5p(1), mmu-miR-375-3p(1), mmu-let-7c-5p(1), mmu-miR-29c-3p(1), mmu-miR-138-5p(1), mmu-let-7d-5p(1), mmu-miR-24-3p(1), mmu-miR-342-3p(1), mmu-miR-300-3p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AGAGCTCCTACAGGCTGTGAGGACAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBTBD7_959_ORF_1
1.033
0.264904493
0.980310053
858
ORF sequence:
ATGACTTCGGATGTTTTTTATGAACTGAGCAAAGACCATCTGCTTACTGCTATCCAGTCTGACTACCTACAGGCAAGCGAACAAGATATCCTTAAATATCTGATTAAATGGGGTGAGCATCAGTTGATGAAAAGAATAGCAGACAGAGAGCCAAACTTACTGAGTGGCACTGCACATAGTGTGAACAAAAGAGGTGTGAAGAGAAGAGACCTGGACATAGAAGAACTTAGAGAGATCCTTTCTTCTCTCTTGCCTTTTGTGCGGATTGAACACATCCTACCTATAAACAGTGAGGTCTTAAGTGATGCAATGAAAAGAGGCTTGATCAGCACGCCGCCATCAGACATGCTTCCTACAGCAGAGGGCGGGAAATCAAACGCCTGGCTGCGGCAGAAGAACGCTGGCATATATGTTCGTCCTCGGCTGTTTTCTCCCTATGTGGAGGAAGCAAAGTCAGTGCTGGATGAGATGATGGTGGAACAGACAGACCTGGTGCGACTGCGAATGGTGCGCATGTCCAATGTCCCAGACACACTCTACATGGTCAGCAATGCCATGCCCCAGTGCTGCCACATGATCAGCCACCAGCAGATCAGCAGTAACCAGTCGAGCCCTCCATCAGTTGTAGCCAATGAGATCCCAGTTCCTCGTCTCCTCATTATGAAGGATATGGTGAGGCGCCTGCAGGAACTGCGGCACACAGAGCAGGTGCAGAGAGCCTATGCACTGAACTGTGGGGAAGGTGCCACCGTCAGCTATGAAATCCAGATCCGAGTGCTCAGAGAGTTTGGTCTTGCAGACGCCGCTGCAGAGCTCCTACAGGCTGTGAGGACATCATTGCTGAGAGCATCTCATTAG
Peptide sequence:
MTSDVFYELSKDHLLTAIQSDYLQASEQDILKYLIKWGEHQLMKRIADREPNLLSGTAHSVNKRGVKRRDLDIEELREILSSLLPFVRIEHILPINSEVLSDAMKRGLISTPPSDMLPTAEGGKSNAWLRQKNAGIYVRPRLFSPYVEEAKSVLDEMMVEQTDLVRLRMVRMSNVPDTLYMVSNAMPQCCHMISHQQISSNQSSPPSVVANEIPVPRLLIMKDMVRRLQELRHTEQVQRAYALNCGEGATVSYEIQIRVLREFGLADAAAELLQAVRTSLLRASH
IRESfinder result
IRESfinder score
0.357831277
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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