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mmu_circBrd7_1073
Basic information of circular RNA
PanCircBase ID:
mmu_circBrd7_1073
mm39_Chr. Position ID:
chr8|89069362|89084657|-
Gene name:
Brd7
Transcript:
ENSMUST00000034085.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
11,10,9,8,7,6,5,4,3
Exon/intron offsets:
0,847,2414,3095,4139,9065,11894,14802,15165
Genomic length:
15295
Exon/intron sizes in nt:
13,61,08,76,12,41,85,10,00,00,00,000
Flanking exon/introns:
chr8:89066148-89069362|chr8:89084657-89088129
Splice length:
1073
Other database IDs:
circAtlas: mmu-Brd7_0022
Human Ortholog IDs:
Mature spliced Sequence:
GAGGATAAAAAGAAGCGGGATCGAGACCGTGCAGAGAATGAGGTGGACAGAGATCTCCAGTGTCATGTCCCTATAAGATTAGACTTACCTCCTGAGAAGCCTCTTACAAGCTCGTTAGCCAAACAAGAAGAAGTAGAACAGACACCCCTTCAGGAAGCTTTGAATCAGCTCATGAGACAATTGCAAAGAAAAGACCCAAGTGCTTTCTTTTCATTTCCTGTGACGGATTTTATTGCGCCTGGCTACTCCATGATTATTAAACACCCAATGGATTTTAGTACCATGAAAGAAAAGATCAAGAATAACGACTACCAGTCCATAGAAGAACTAAAGGATAACTTCAAGCTAATGTGTACTAATGCAATGATTTACAATAAGCCAGAGACCATTTATTATAAAGCTGCAAAGAAGCTGTTGCACTCAGGGATGAAAATTCTCAGTCAGGAGAGAATTCAGAGCCTGAAGCAGAGTATAGACTTCATGTCAGACTTGCAGAAAACTCGGAAGCAGAAAGAACGAACAGATGCCTGTCAGAGTGGGGAGGACAGCGGCTGCTGGCAGCGCGAGAGGGAAGACTCTGGAGATGCTGAAACACAGGCCTTCAGAAGCCCCGCTAAGGACAATAAAAGGAAAGACAAAGATGTGCTTGAAGACAAATGGAGAAGCAGCAACTCAGAAAGGGAGCATGAGCAGATTGAGCGCGTTGTCCAGGAGTCAGGAGGCAAGCTAACACGGCGGCTGGCAAACAGTCAGTGTGAATTTGAAAGAAGAAAACCAGATGGGACAACAACACTGGGGCTTCTCCATCCTGTGGATCCCATTGTGGGAGAGCCAGGCTACTGCCCTGTGAGATTGGGGATGACAACTGGAAGACTGCAGTCTGGAGTGAACACTCTGCAGGGGTTCAAAGAGGATAAAAGGAACAGAGTAACCCCAGTATTATACTTGAATTATGGACCCTACAGTTCTTATGCCCCACATTATGACTCTACATTTGCCAATATTAGCAAAGATGATTCTGATTTAATCTACTCAACATATGGGGAAGACTCTGACCTTCCAAACAATTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCACATTATGACTCTACATTTGCC
59.99
CACCTCATTCTCTGCACGGT
60.04
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCCACATTATGACTCTACATTTGC
59.99
CACCTCATTCTCTGCACGGT
60.04
145
PCR template sequence:
CCCCACATTATGACTCTACATTTGCCAATATTAGCAAAGATGATTCTGATTTAATCTACTCAACATATGGGGAAGACTCTGACCTTCCAAACAATTTCAGGAGGATAAAAAGAAGCGGGATCGAGACCGTGCAGAGAATGAGGTGGACAGAGATCTCCAGTGTCATGTCCCTATAAGATTAGACTTACCTCCTGAGAAGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-200c-3p(1), mmu-miR-216a-5p(1), mmu-miR-136-5p(1), mmu-miR-182-5p(1), mmu-miR-301b-3p(1), mmu-miR-183-5p(1), mmu-miR-301a-3p(1), mmu-miR-369-3p(1), mmu-miR-484(1), mmu-miR-540-3p(1), mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CAAACAATTTCAGGAGGATAAAAAGA
siRNA sets
TTTTATCCTCCTGAAATTG, TTTATCCTCCTGAAATTGT, TTTTTATCCTCCTGAAATT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBRD7_1073_ORF_1
0.7561
0.166265771
0.979166668
978
ORF sequence:
ATGAGACAATTGCAAAGAAAAGACCCAAGTGCTTTCTTTTCATTTCCTGTGACGGATTTTATTGCGCCTGGCTACTCCATGATTATTAAACACCCAATGGATTTTAGTACCATGAAAGAAAAGATCAAGAATAACGACTACCAGTCCATAGAAGAACTAAAGGATAACTTCAAGCTAATGTGTACTAATGCAATGATTTACAATAAGCCAGAGACCATTTATTATAAAGCTGCAAAGAAGCTGTTGCACTCAGGGATGAAAATTCTCAGTCAGGAGAGAATTCAGAGCCTGAAGCAGAGTATAGACTTCATGTCAGACTTGCAGAAAACTCGGAAGCAGAAAGAACGAACAGATGCCTGTCAGAGTGGGGAGGACAGCGGCTGCTGGCAGCGCGAGAGGGAAGACTCTGGAGATGCTGAAACACAGGCCTTCAGAAGCCCCGCTAAGGACAATAAAAGGAAAGACAAAGATGTGCTTGAAGACAAATGGAGAAGCAGCAACTCAGAAAGGGAGCATGAGCAGATTGAGCGCGTTGTCCAGGAGTCAGGAGGCAAGCTAACACGGCGGCTGGCAAACAGTCAGTGTGAATTTGAAAGAAGAAAACCAGATGGGACAACAACACTGGGGCTTCTCCATCCTGTGGATCCCATTGTGGGAGAGCCAGGCTACTGCCCTGTGAGATTGGGGATGACAACTGGAAGACTGCAGTCTGGAGTGAACACTCTGCAGGGGTTCAAAGAGGATAAAAGGAACAGAGTAACCCCAGTATTATACTTGAATTATGGACCCTACAGTTCTTATGCCCCACATTATGACTCTACATTTGCCAATATTAGCAAAGATGATTCTGATTTAATCTACTCAACATATGGGGAAGACTCTGACCTTCCAAACAATTTCAGGAGGATAAAAAGAAGCGGGATCGAGACCGTGCAGAGAATGAGGTGGACAGAGATCTCCAGTGTCATGTCCCTATAA
Peptide sequence:
MRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMSDLQKTRKQKERTDACQSGEDSGCWQREREDSGDAETQAFRSPAKDNKRKDKDVLEDKWRSSNSEREHEQIERVVQESGGKLTRRLANSQCEFERRKPDGTTTLGLLHPVDPIVGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNRVTPVLYLNYGPYSSYAPHYDSTFANISKDDSDLIYSTYGEDSDLPNNFRRIKRSGIETVQRMRWTEISSVMSL
IRESfinder result
IRESfinder score
0.482728648
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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