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mmu_circBrd1_2373
Basic information of circular RNA
PanCircBase ID:
mmu_circBrd1_2373
mm39_Chr. Position ID:
chr15|88591236|88614907|-
Gene name:
Brd1
Transcript:
ENSMUST00000109381.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
7,6,5,4,3,2
Exon/intron offsets:
0,5582,6264,6852,9872,22290
Genomic length:
23671
Exon/intron sizes in nt:
26,13,13,12,91,32,15,70,000
Flanking exon/introns:
chr15:88585473-88591236|chr15:88614907-88618131
Splice length:
2373
Other database IDs:
circAtlas: mmu-Brd1_0010
circAtlas: hsa-BRD1_0012, CIRCpedia: HSA_CIRCpedia_180873
Human Ortholog IDs:
Mature spliced Sequence:
GTAATCATTGCCAAATGAGGAGGAAAGGACGATGCCATCGAGGTTCTGCAGCGAGGCATCCTTCTTCCCCGTGCAGTATTAAACACTCCCCCACTCGAGAAACACTGACCTACGCACAAGCTCAAAGGATGGTGGAGATAGAAATCGAAGGGCGCTTGCATCGGATCAGTATTTTTGATCCCTTGGAGATCATACTAGAAGATGACCTCACTGCTCAGGAAATGAGTGAATGTAACAGTAATAAGGAGAACAGCGAGAGGCCGCCTGTTTGCTTAAGAACTAAGCGTCACAAAAACAACAGAGTCAAAAAGAAAAATGAAGTCCTGCCCAGCACCCACGGCACACCGGCGTCAGCCAGTGCCCTTCCCGAGCCCAAGGTGCGGATTGTGGAGTACAGTCCTCCCTCTGCACCCAGGAGGCCCCCTGTGTACTACAAGTTCATCGAGAAGTCAGCCGAGGAGCTGGACAACGAGGTAGAGTACGACATGGATGAGGAAGACTACGCCTGGCTAGAGATCATCAATGAGAAGCGGAAGGGTGACTGCGTCTCTGCCGTGTCACAGAATATGTTTGAGTTCCTGATGGACCGCTTCGAGAAGGAGTCTTACTGTGAGAACCAGAAGCAGGGTGAGCAGCAGTCCTTGATAGATGAGGACGCTGTTTGCTGCATCTGCATGGACGGGGAGTGCCAGAACAGCAACGTTATACTCTTCTGTGACATGTGCAACCTGGCTGTGCACCAGGAGTGCTATGGGGTACCCTACATCCCCGAGGGCCAGTGGCTTTGCCGCCACTGCCTGCAGTCTCGGGCCCGCCCTGCGGATTGCGTGCTGTGCCCGAATAAGGGCGGTGCCTTCAAAAAGACAGACGATGACCGCTGGGGCCACGTGGTATGTGCCCTGTGGATCCCAGAGGTTGGCTTTGCCAACACGGTATTCATTGAGCCCATTGACGGTGTGAGGAACATCCCTCCTGCCCGGTGGAAACTGACATGCTACCTCTGTAAGCAGAAAGGCGTGGGTGCCTGCATTCAGTGCCACAAAGCAAATTGCTACACAGCATTCCATGTGACATGTGCCCAGAAGGCTGGCCTATACATGAAGATGGAGCCTGTGAAGGAGCTGACTGGAGGCAGCGCCACGTTCTCTGTCAGAAAGACTGCTTACTGTGATGTCCACACGCCTCCAGGCTGTACCCGGAGGCCGTTGAACATTTATGGAGATGTTGAAATGAAAAATGGTGTGTGTCGAAAAGAAAGCTCAGTCAAAACGGTCAGGTCTACGTCCAAGGTCAGGAAAAAAGCAAAAAAGGCTAAGAAAACACTGGCTGAGCCCTGTGCGGTCCTGCCGACCGTGTGCGCTCCGTATATCCCCCCTCAGAGATTAAATAGGATTGCGAATCAGGTGGCCATTCAGCGGAAGAAGCAGTTTGTGGAGCGAGCCCACAGCTACTGGTTGCTCAAAAGGCTGTCTAGGAATGGTGCTCCCCTGTTGCGGCGGCTCCAGTCCAGCCTGCAGTCCCAGAGAAACACGCAGCAGAGAGAAAATGATGAAGAGATGAAAGCTGCCAAAGAGAAGCTAAAGTACTGGCAGCGGCTGCGACATGACCTAGAGCGTGCACGCCTGCTAATTGAGCTGCTGCGCAAGCGGGAGAAACTCAAGAGAGAGCAGGTGAAGGTGGAGCAGATGGCTATGGAGCTCCGGCTGACGCCGCTAACTGTGCTGCTACGCTCAGTCCTGGAGCAGCTACAGGAGAAGGACCCTGCAAAGATCTTTGCCCAGCCCGTGAGTCTCAAGGAGGTACCAGATTATTTGGATCACATTAAACACCCCATGGACTTTGCTACAATGAGGAAACGGCTAGAAGCTCAAGGGTATAAAAACCTCCATGCCTTTGAGGAGGATTTTAATCTCATTGTAGATAACTGCATGAAGTACAATGCCAAGGACACCGTGTTTTATAGAGCTGCAGTGAGGCTGCGCGACCAGGGAGGGGTTGTCCTGAGGCAGGCCCGGCGAGAGGTGGAGAGCATTGGCCTGGAAGAGGCCTCGGGAATGCACCTGCCTGAGCGACCCATCGCAGCCCCTCGGCGGCCCTTCTCCTGGGAAGAGGTGGACAGGTTGCTGGACCCAGCCAACAGGGCCCACATGAGCTTGGAGGAGCAGCTGAGAGAACTTCTGGACAAGTTGGACCTGACCTGCTCCATGAAGTCCAGCGGCTCACGGAGTAAACGGGCAAAGCTGCTTAAAAAAGAGATTGCTCTTCTCCGAAACAAGCTGAGCCAGCAGCACAGCCAGGCTCCGCCCACAGGGGCAGGCACGGGAGGCTTTGAAGATGAGGCTGCTCCACTGGCCCCGGACACAGCGGAGGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAAGATGAGGCTGCTCCAC
59.75
TCTCGAGTGGGGGAGTGTTT
60.47
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGATGAGGCTGCTCCACTG
59.75
TCTCGAGTGGGGGAGTGTTT
60.47
142
PCR template sequence:
AAGCTGAGCCAGCAGCACAGCCAGGCTCCGCCCACAGGGGCAGGCACGGGAGGCTTTGAAGATGAGGCTGCTCCACTGGCCCCGGACACAGCGGAGGAAGGTAATCATTGCCAAATGAGGAGGAAAGGACGATGCCATCGAGGTTCTGCAGCGAGGCATCCTTCTTCCCCGTGCAGTATTAAACACTCCCCCACTCGAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
26
Interacting miRNAs (#binding sites)
mmu-miR-429-3p(3), mmu-miR-200c-3p(2), mmu-miR-182-5p(2), mmu-miR-210-3p(1), mmu-let-7a-5p(1), mmu-miR-15a-5p(1), mmu-miR-200b-3p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-15b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29c-3p(1), mmu-miR-298-5p(1), mmu-miR-181b-5p(1), mmu-let-7d-5p(1), mmu-miR-149-5p(1), mmu-miR-98-5p(1), mmu-miR-384-3p(1), mmu-miR-207(1), mmu-miR-335-3p(1), mmu-miR-532-5p(1), mmu-miR-452-3p(1), mmu-miR-1904(1), mmu-miR-3105-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ACAGCGGAGGAAGGTAATCATTGCCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBRD1_2373_ORF_1
1.0961
0.373724267
1
4731
ORF sequence:
ATGAGGAGGAAAGGACGATGCCATCGAGGTTCTGCAGCGAGGCATCCTTCTTCCCCGTGCAGTATTAAACACTCCCCCACTCGAGAAACACTGACCTACGCACAAGCTCAAAGGATGGTGGAGATAGAAATCGAAGGGCGCTTGCATCGGATCAGTATTTTTGATCCCTTGGAGATCATACTAGAAGATGACCTCACTGCTCAGGAAATGAGTGAATGTAACAGTAATAAGGAGAACAGCGAGAGGCCGCCTGTTTGCTTAAGAACTAAGCGTCACAAAAACAACAGAGTCAAAAAGAAAAATGAAGTCCTGCCCAGCACCCACGGCACACCGGCGTCAGCCAGTGCCCTTCCCGAGCCCAAGGTGCGGATTGTGGAGTACAGTCCTCCCTCTGCACCCAGGAGGCCCCCTGTGTACTACAAGTTCATCGAGAAGTCAGCCGAGGAGCTGGACAACGAGGTAGAGTACGACATGGATGAGGAAGACTACGCCTGGCTAGAGATCATCAATGAGAAGCGGAAGGGTGACTGCGTCTCTGCCGTGTCACAGAATATGTTTGAGTTCCTGATGGACCGCTTCGAGAAGGAGTCTTACTGTGAGAACCAGAAGCAGGGTGAGCAGCAGTCCTTGATAGATGAGGACGCTGTTTGCTGCATCTGCATGGACGGGGAGTGCCAGAACAGCAACGTTATACTCTTCTGTGACATGTGCAACCTGGCTGTGCACCAGGAGTGCTATGGGGTACCCTACATCCCCGAGGGCCAGTGGCTTTGCCGCCACTGCCTGCAGTCTCGGGCCCGCCCTGCGGATTGCGTGCTGTGCCCGAATAAGGGCGGTGCCTTCAAAAAGACAGACGATGACCGCTGGGGCCACGTGGTATGTGCCCTGTGGATCCCAGAGGTTGGCTTTGCCAACACGGTATTCATTGAGCCCATTGACGGTGTGAGGAACATCCCTCCTGCCCGGTGGAAACTGACATGCTACCTCTGTAAGCAGAAAGGCGTGGGTGCCTGCATTCAGTGCCACAAAGCAAATTGCTACACAGCATTCCATGTGACATGTGCCCAGAAGGCTGGCCTATACATGAAGATGGAGCCTGTGAAGGAGCTGACTGGAGGCAGCGCCACGTTCTCTGTCAGAAAGACTGCTTACTGTGATGTCCACACGCCTCCAGGCTGTACCCGGAGGCCGTTGAACATTTATGGAGATGTTGAAATGAAAAATGGTGTGTGTCGAAAAGAAAGCTCAGTCAAAACGGTCAGGTCTACGTCCAAGGTCAGGAAAAAAGCAAAAAAGGCTAAGAAAACACTGGCTGAGCCCTGTGCGGTCCTGCCGACCGTGTGCGCTCCGTATATCCCCCCTCAGAGATTAAATAGGATTGCGAATCAGGTGGCCATTCAGCGGAAGAAGCAGTTTGTGGAGCGAGCCCACAGCTACTGGTTGCTCAAAAGGCTGTCTAGGAATGGTGCTCCCCTGTTGCGGCGGCTCCAGTCCAGCCTGCAGTCCCAGAGAAACACGCAGCAGAGAGAAAATGATGAAGAGATGAAAGCTGCCAAAGAGAAGCTAAAGTACTGGCAGCGGCTGCGACATGACCTAGAGCGTGCACGCCTGCTAATTGAGCTGCTGCGCAAGCGGGAGAAACTCAAGAGAGAGCAGGTGAAGGTGGAGCAGATGGCTATGGAGCTCCGGCTGACGCCGCTAACTGTGCTGCTACGCTCAGTCCTGGAGCAGCTACAGGAGAAGGACCCTGCAAAGATCTTTGCCCAGCCCGTGAGTCTCAAGGAGGTACCAGATTATTTGGATCACATTAAACACCCCATGGACTTTGCTACAATGAGGAAACGGCTAGAAGCTCAAGGGTATAAAAACCTCCATGCCTTTGAGGAGGATTTTAATCTCATTGTAGATAACTGCATGAAGTACAATGCCAAGGACACCGTGTTTTATAGAGCTGCAGTGAGGCTGCGCGACCAGGGAGGGGTTGTCCTGAGGCAGGCCCGGCGAGAGGTGGAGAGCATTGGCCTGGAAGAGGCCTCGGGAATGCACCTGCCTGAGCGACCCATCGCAGCCCCTCGGCGGCCCTTCTCCTGGGAAGAGGTGGACAGGTTGCTGGACCCAGCCAACAGGGCCCACATGAGCTTGGAGGAGCAGCTGAGAGAACTTCTGGACAAGTTGGACCTGACCTGCTCCATGAAGTCCAGCGGCTCACGGAGTAAACGGGCAAAGCTGCTTAAAAAAGAGATTGCTCTTCTCCGAAACAAGCTGAGCCAGCAGCACAGCCAGGCTCCGCCCACAGGGGCAGGCACGGGAGGCTTTGAAGATGAGGCTGCTCCACTGGCCCCGGACACAGCGGAGGAAGGTAATCATTGCCAAATGAGGAGGAAAGGACGATGCCATCGAGGTTCTGCAGCGAGGCATCCTTCTTCCCCGTGCAGTATTAAACACTCCCCCACTCGAGAAACACTGACCTACGCACAAGCTCAAAGGATGGTGGAGATAGAAATCGAAGGGCGCTTGCATCGGATCAGTATTTTTGATCCCTTGGAGATCATACTAGAAGATGACCTCACTGCTCAGGAAATGAGTGAATGTAACAGTAATAAGGAGAACAGCGAGAGGCCGCCTGTTTGCTTAAGAACTAAGCGTCACAAAAACAACAGAGTCAAAAAGAAAAATGAAGTCCTGCCCAGCACCCACGGCACACCGGCGTCAGCCAGTGCCCTTCCCGAGCCCAAGGTGCGGATTGTGGAGTACAGTCCTCCCTCTGCACCCAGGAGGCCCCCTGTGTACTACAAGTTCATCGAGAAGTCAGCCGAGGAGCTGGACAACGAGGTAGAGTACGACATGGATGAGGAAGACTACGCCTGGCTAGAGATCATCAATGAGAAGCGGAAGGGTGACTGCGTCTCTGCCGTGTCACAGAATATGTTTGAGTTCCTGATGGACCGCTTCGAGAAGGAGTCTTACTGTGAGAACCAGAAGCAGGGTGAGCAGCAGTCCTTGATAGATGAGGACGCTGTTTGCTGCATCTGCATGGACGGGGAGTGCCAGAACAGCAACGTTATACTCTTCTGTGACATGTGCAACCTGGCTGTGCACCAGGAGTGCTATGGGGTACCCTACATCCCCGAGGGCCAGTGGCTTTGCCGCCACTGCCTGCAGTCTCGGGCCCGCCCTGCGGATTGCGTGCTGTGCCCGAATAAGGGCGGTGCCTTCAAAAAGACAGACGATGACCGCTGGGGCCACGTGGTATGTGCCCTGTGGATCCCAGAGGTTGGCTTTGCCAACACGGTATTCATTGAGCCCATTGACGGTGTGAGGAACATCCCTCCTGCCCGGTGGAAACTGACATGCTACCTCTGTAAGCAGAAAGGCGTGGGTGCCTGCATTCAGTGCCACAAAGCAAATTGCTACACAGCATTCCATGTGACATGTGCCCAGAAGGCTGGCCTATACATGAAGATGGAGCCTGTGAAGGAGCTGACTGGAGGCAGCGCCACGTTCTCTGTCAGAAAGACTGCTTACTGTGATGTCCACACGCCTCCAGGCTGTACCCGGAGGCCGTTGAACATTTATGGAGATGTTGAAATGAAAAATGGTGTGTGTCGAAAAGAAAGCTCAGTCAAAACGGTCAGGTCTACGTCCAAGGTCAGGAAAAAAGCAAAAAAGGCTAAGAAAACACTGGCTGAGCCCTGTGCGGTCCTGCCGACCGTGTGCGCTCCGTATATCCCCCCTCAGAGATTAAATAGGATTGCGAATCAGGTGGCCATTCAGCGGAAGAAGCAGTTTGTGGAGCGAGCCCACAGCTACTGGTTGCTCAAAAGGCTGTCTAGGAATGGTGCTCCCCTGTTGCGGCGGCTCCAGTCCAGCCTGCAGTCCCAGAGAAACACGCAGCAGAGAGAAAATGATGAAGAGATGAAAGCTGCCAAAGAGAAGCTAAAGTACTGGCAGCGGCTGCGACATGACCTAGAGCGTGCACGCCTGCTAATTGAGCTGCTGCGCAAGCGGGAGAAACTCAAGAGAGAGCAGGTGAAGGTGGAGCAGATGGCTATGGAGCTCCGGCTGACGCCGCTAACTGTGCTGCTACGCTCAGTCCTGGAGCAGCTACAGGAGAAGGACCCTGCAAAGATCTTTGCCCAGCCCGTGAGTCTCAAGGAGGTACCAGATTATTTGGATCACATTAAACACCCCATGGACTTTGCTACAATGAGGAAACGGCTAGAAGCTCAAGGGTATAAAAACCTCCATGCCTTTGAGGAGGATTTTAATCTCATTGTAGATAACTGCATGAAGTACAATGCCAAGGACACCGTGTTTTATAGAGCTGCAGTGAGGCTGCGCGACCAGGGAGGGGTTGTCCTGAGGCAGGCCCGGCGAGAGGTGGAGAGCATTGGCCTGGAAGAGGCCTCGGGAATGCACCTGCCTGAGCGACCCATCGCAGCCCCTCGGCGGCCCTTCTCCTGGGAAGAGGTGGACAGGTTGCTGGACCCAGCCAACAGGGCCCACATGAGCTTGGAGGAGCAGCTGAGAGAACTTCTGGACAAGTTGGACCTGACCTGCTCCATGAAGTCCAGCGGCTCACGGAGTAAACGGGCAAAGCTGCTTAAAAAAGAGATTGCTCTTCTCCGAAACAAGCTGAGCCAGCAGCACAGCCAGGCTCCGCCCACAGGGGCAGGCACGGGAGGCTTTGAAGATGAGGCTGCTCCACTGGCCCCGGACACAGCGGAGGAA
Peptide sequence:
MRRKGRCHRGSAARHPSSPCSIKHSPTRETLTYAQAQRMVEIEIEGRLHRISIFDPLEIILEDDLTAQEMSECNSNKENSERPPVCLRTKRHKNNRVKKKNEVLPSTHGTPASASALPEPKVRIVEYSPPSAPRRPPVYYKFIEKSAEELDNEVEYDMDEEDYAWLEIINEKRKGDCVSAVSQNMFEFLMDRFEKESYCENQKQGEQQSLIDEDAVCCICMDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPADCVLCPNKGGAFKKTDDDRWGHVVCALWIPEVGFANTVFIEPIDGVRNIPPARWKLTCYLCKQKGVGACIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGSATFSVRKTAYCDVHTPPGCTRRPLNIYGDVEMKNGVCRKESSVKTVRSTSKVRKKAKKAKKTLAEPCAVLPTVCAPYIPPQRLNRIANQVAIQRKKQFVERAHSYWLLKRLSRNGAPLLRRLQSSLQSQRNTQQRENDEEMKAAKEKLKYWQRLRHDLERARLLIELLRKREKLKREQVKVEQMAMELRLTPLTVLLRSVLEQLQEKDPAKIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHAFEEDFNLIVDNCMKYNAKDTVFYRAAVRLRDQGGVVLRQARREVESIGLEEASGMHLPERPIAAPRRPFSWEEVDRLLDPANRAHMSLEEQLRELLDKLDLTCSMKSSGSRSKRAKLLKKEIALLRNKLSQQHSQAPPTGAGTGGFEDEAAPLAPDTAEEGNHCQMRRKGRCHRGSAARHPSSPCSIKHSPTRETLTYAQAQRMVEIEIEGRLHRISIFDPLEIILEDDLTAQEMSECNSNKENSERPPVCLRTKRHKNNRVKKKNEVLPSTHGTPASASALPEPKVRIVEYSPPSAPRRPPVYYKFIEKSAEELDNEVEYDMDEEDYAWLEIINEKRKGDCVSAVSQNMFEFLMDRFEKESYCENQKQGEQQSLIDEDAVCCICMDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPADCVLCPNKGGAFKKTDDDRWGHVVCALWIPEVGFANTVFIEPIDGVRNIPPARWKLTCYLCKQKGVGACIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGSATFSVRKTAYCDVHTPPGCTRRPLNIYGDVEMKNGVCRKESSVKTVRSTSKVRKKAKKAKKTLAEPCAVLPTVCAPYIPPQRLNRIANQVAIQRKKQFVERAHSYWLLKRLSRNGAPLLRRLQSSLQSQRNTQQRENDEEMKAAKEKLKYWQRLRHDLERARLLIELLRKREKLKREQVKVEQMAMELRLTPLTVLLRSVLEQLQEKDPAKIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHAFEEDFNLIVDNCMKYNAKDTVFYRAAVRLRDQGGVVLRQARREVESIGLEEASGMHLPERPIAAPRRPFSWEEVDRLLDPANRAHMSLEEQLRELLDKLDLTCSMKSSGSRSKRAKLLKKEIALLRNKLSQQHSQAPPTGAGTGGFEDEAAPLAPDTAEE
IRESfinder result
IRESfinder score
0.308017395
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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