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mmu_circBptf_3433
Basic information of circular RNA
PanCircBase ID:
mmu_circBptf_3433
mm39_Chr. Position ID:
chr11|106963508|106973526|-
Gene name:
Bptf
Transcript:
ENSMUST00000057892.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
11,10,9,8,7,6,5
Exon/intron offsets:
0,3839,4977,5837,8040,8533,9830
Genomic length:
10018
Exon/intron sizes in nt:
2308,180,139,130,132,356,188
Flanking exon/introns:
chr11:106959225-106963508|chr11:106973526-106986541
Splice length:
3433
Other database IDs:
circAtlas: mmu-Bptf_0014
Human Ortholog IDs:
Mature spliced Sequence:
GTGATTTCAGACTGGAGAAGTCCAATGGAGAAGTTTCCGAGTCCCCTGGAGCTGGGAAAGGAACATCTGGGTCCACTCGTATCATCACCAGACTGAGGAACCCGGAGAGCAAACTCAGTCAGCTCAAGAGTCAGCAGGTGGCAGCTGCAGCCCATGAAGCAAATAAATTGTTTAAGGAGGGGAAAGAGGTGCTGGTGGTTAACTCCCAAGGAGAGGTTTCACGGCTGAGCACCAAAAAGGAGGTGGTCATGAAAGGGAACATCAACAACTATTTTAAGCTGGGACAAGAAGGGAAGTATCGAGTCTACCACAATCAATACTCGACCAATTCATTTGCTCTGAATAAACACCAGCACAGAGAAGACCATGATAAGAGGAGGCATCTTGCACATAAATTCTGTCTCACTCCAGCTGGGGAGTTCAAATGGAACGGGTCTGTTCACGGGTCCAAAGTCCTTACCATCTCAACCCTGAGACTCACCATCACACAGCTAGAGAGCAACATTCCTTCATCCTTCCTTCACCCCAATTGGGCTTCACACAGGGCTAATTGGATCAAGGCCGTTCAGATGTGTAGTAAACCCAGAGAGTTTGCGTTGGCTCTCGCAATTCTGGAGTGTGCAGTTAAGCCAGTTGTGATGCTGCCAATATGGCGGGAGTCTCTAGGACATACCCGGTTACATAGGATGACATCAATTGAAAGGGAAGAAAAAGAGAAAGTTAAAAAAAAGGAGAAAAAACAAGAGGAGGAGGAGACAATGCAGCAGGCCACATGGGTAAAATACACATTTCCAGTGAAGCACCAGGTTTGGAAACAGAAAGGTGAGGAGTACCGAGTGACAGGGTACGGCGGCTGGAGCTGGATTAGCAAGACGCACGTTTACAGATTTCTTCCCAAGTTACCAGGAAACACGAATGTAAACTACAGAAAGCCCTTGGATGGAGCCAAAAACAATACAGATGAAAATAAAGATGAGTCAGAGAAAAGGAAAAGTCCACGAAGTCCAAAAAAAATGAAGACAGAATGTGATTCTGAACAAGGTGAGACCAGAGATGCAGATGCCACAGCTGGAGCCGCCGCAGGGGCAATGGAGCTGTCTAAGGAACCTGAGAAGAAGGATCAAGATGTAAAAGAACTTTTAGATTCTGATAATGACAAATCCTTCAAGGAAGAACCAATGGAGATCGATGATACCATAAAAACAGAGTCACACGTGAGCAGTCTGGAAAGCACAGAGGTAGATGTAGTCAATGTTAGTGAGGGCTTCCATCTAAGGACTAGTTACAAAAAGAAAACGAAATCCTCTAAGCTGGACGGGCTTCTGGAACGGAGGATTCGACAATTTACACTGGAAGAAAAACAGCGTCTTGAGAAGTTAAAGCTGGAGAGTGGGGTGAAGGGGGCGGGGAAGCCCCCCATGGGTGCTCTGAAAAGCTCCTCTGAGTCTCCAGGCTCCACAAAAGCAAGCGAAGGGCATCAGGGTGACTCGCTGAGACAGGAACAAAGCCCCAGTTCAAGTCAGGCTAGCACTGTGGACTTGGGGCTGGGGGGCTCACAAAGTGATCCCTTGGTTCTTGGCATCAGTCCTCCTAGTCTAAGCACGCACAAACCTGATCCAAAAGATCAAGTATTAGATGATGTCTCCATTCAGAGTCCAGGGCCAAACTGTCAGAGGCAAAACTCAGTTGAAAGCGACCTAGATGCCAGGATCTCTGAACCTGCCGGTAAGGGACTGGAACTAAGTCAGACTAAAACAGAAGTGACTGACTCTTCCTCTGATGACTCTAAACCAACCAGTGCAGACGATGTTGGCATTTTGATCTGTAAGAGCAGAAAGCTGCACTCACAGGACGATAGCAGCACCGTTGTGTCTTCTTCCAAGAGTACTTTACCTGCATCAGTACCTAAAAGTCCCCGTGACAGAGATGCCCGGGCCTTCTCAAAAGCAGTGGACTTCGATGGGAGACTAGGTGGTGACTCTGAATATAGTAGCACTTTGGAAAATAGCTCTGATAATATGTGTATTCGGGACAGTGCTGAAGAAGATATGGTTGTTCAGAACAGCAGTGAAGCCACCTCGAAACGGTTCATAGCTCCAGAACAAGGAGGAGAAAGCGTGGAGTCGACAAAATGTCAGGTAGTTTCTAAGTCCACTGAAAACTGTGAAGACAAACTACAGGGTAAGGTAACTGAAGCAAACGGTAAGAAACTGGGCCAACATCCTCCAAAGCCAGAGGAGAGAGCAGTTAACAGATGTACTGACCAAGTCAGCCTGCGACACAGCGTTGACAGAAAGAACAGTGAACCTCGAGAGTCTGAAAAGAAAGGACAGAAAGCAAATAAATTTCAAATAAACGGCAAAGATAGCAAAGCTAAGGGGTACCTGAAGGGGCCGGGCACGAAGGACGGCTCTGATGGTAAAGTTGTGAGTAGTGCTGTAGAACCAAAGGTCAATAATATCAATAAAGTCATCCCTGGGAATACCAAGTCACTGGCTGGGAAGGAATCTGCTGCGAAGCCGTTCATCAACGGTGACATCATTATGGAAGAGTTGAGTGAACAAAACACTTCAGAAACCAACTCATACTCACTGAGTTCTTCAGATGCCAAAGGTAATCACCAAGATGGCCTCCATACCCTACCATCCACCAAAGAGTCTGCCAGTACCCAGGTAATCACACCCCGAGCCCCTTGTCCAGATCGGAACTCACTTAGTCAGGTAGAAGATATGGAAACTGAAAGTCCAGAGGTTAAGAGAGTTATCCCGTCTCCTGTTAGAACTGGAGAGGGCTCTAACCTTAGCAAGGGCTTCATGGATGACAATGGACTGCCTTCCAGCAAAGACGAGAACGTCAATGGAGAATCCCAAAGAAAGACGGTCATCACAGAAGTCACCACAATGACATCTACTGTTGCCACAGAATCAAAAACTGTCATTAAGGTAGCAAAAGGAGACAAGCAAACTGTGGTTTCTTCCACAGAAAATTGTGCCAGATCCACAGTCACAACTACCACTACCACTGTGACAAAGCTCTCCACACCCTCCCCAGACACCGGTGTGGATACCATCTCTGTAAAGGAGCAGAGTAAAACCGTGGTCACCACGACAGTGACGGACTCCTTGACCACTGCAGGAAGCACACTGGTGACATCTATGACCGTGAGCAAAGAGTACTCCACGAGAGACAGGGTAAAGCTGATGAAGTTCTCACGACCCAAGAAGACCCGCTCAGGCACTGCCCTGCCGTCCTATAGGAAGTTCGTTACCAAGAGCAGCAAAAAGAGCATATTTGTGTTACCTAATGATGACTTGAAAAAGCTGGCCAGGAAAGGAGGGATCCGGGAGGTCCCTTACTTTAATTATAACGCGAAACCTGCCTTGGATATATGGCCATACCCTTCTCCTAGACCGACCTTTGGTATCACATGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGCGAAACCTGCCTTGGATA
60.74
CGAGTGGACCCAGATGTTCC
60.11
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATAACGCGAAACCTGCCTTG
59.2
CGAGTGGACCCAGATGTTCC
60.11
149
PCR template sequence:
GAGGGATCCGGGAGGTCCCTTACTTTAATTATAACGCGAAACCTGCCTTGGATATATGGCCATACCCTTCTCCTAGACCGACCTTTGGTATCACATGGAGGTGATTTCAGACTGGAGAAGTCCAATGGAGAAGTTTCCGAGTCCCCTGGAGCTGGGAAAGGAACATCTGGGTCCACTCGTATCATCACCAGACTGAGGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
40
Interacting miRNAs (#binding sites)
mmu-miR-680(3), mmu-miR-211-5p(2), mmu-miR-339-5p(2), mmu-miR-10a-5p(2), mmu-miR-136-5p(2), mmu-miR-1904(2), mmu-miR-9-5p(1), mmu-miR-20b-5p(1), mmu-miR-15a-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-32-5p(1), mmu-miR-375-3p(1), mmu-miR-103-3p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-101a-3p(1), mmu-miR-204-5p(1), mmu-miR-106b-5p(1), mmu-miR-222-3p(1), mmu-miR-138-5p(1), mmu-miR-10b-5p(1), mmu-miR-139-5p(1), mmu-miR-127-3p(1), mmu-miR-676-3p(1), mmu-miR-22-3p(1), mmu-miR-483-5p(1), mmu-miR-182-5p(1), mmu-miR-370-3p(1), mmu-miR-34b-5p(1), mmu-miR-107-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-129-5p(1), mmu-miR-207(1), mmu-miR-335-3p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GTATCACATGGAGGTGATTTCAGACT
siRNA sets
TCTGAAATCACCTCCATGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBPTF_3433_ORF_1
0.9906
0.192064969
0.999999998
3189
ORF sequence:
ATGAAAGGGAACATCAACAACTATTTTAAGCTGGGACAAGAAGGGAAGTATCGAGTCTACCACAATCAATACTCGACCAATTCATTTGCTCTGAATAAACACCAGCACAGAGAAGACCATGATAAGAGGAGGCATCTTGCACATAAATTCTGTCTCACTCCAGCTGGGGAGTTCAAATGGAACGGGTCTGTTCACGGGTCCAAAGTCCTTACCATCTCAACCCTGAGACTCACCATCACACAGCTAGAGAGCAACATTCCTTCATCCTTCCTTCACCCCAATTGGGCTTCACACAGGGCTAATTGGATCAAGGCCGTTCAGATGTGTAGTAAACCCAGAGAGTTTGCGTTGGCTCTCGCAATTCTGGAGTGTGCAGTTAAGCCAGTTGTGATGCTGCCAATATGGCGGGAGTCTCTAGGACATACCCGGTTACATAGGATGACATCAATTGAAAGGGAAGAAAAAGAGAAAGTTAAAAAAAAGGAGAAAAAACAAGAGGAGGAGGAGACAATGCAGCAGGCCACATGGGTAAAATACACATTTCCAGTGAAGCACCAGGTTTGGAAACAGAAAGGTGAGGAGTACCGAGTGACAGGGTACGGCGGCTGGAGCTGGATTAGCAAGACGCACGTTTACAGATTTCTTCCCAAGTTACCAGGAAACACGAATGTAAACTACAGAAAGCCCTTGGATGGAGCCAAAAACAATACAGATGAAAATAAAGATGAGTCAGAGAAAAGGAAAAGTCCACGAAGTCCAAAAAAAATGAAGACAGAATGTGATTCTGAACAAGGTGAGACCAGAGATGCAGATGCCACAGCTGGAGCCGCCGCAGGGGCAATGGAGCTGTCTAAGGAACCTGAGAAGAAGGATCAAGATGTAAAAGAACTTTTAGATTCTGATAATGACAAATCCTTCAAGGAAGAACCAATGGAGATCGATGATACCATAAAAACAGAGTCACACGTGAGCAGTCTGGAAAGCACAGAGGTAGATGTAGTCAATGTTAGTGAGGGCTTCCATCTAAGGACTAGTTACAAAAAGAAAACGAAATCCTCTAAGCTGGACGGGCTTCTGGAACGGAGGATTCGACAATTTACACTGGAAGAAAAACAGCGTCTTGAGAAGTTAAAGCTGGAGAGTGGGGTGAAGGGGGCGGGGAAGCCCCCCATGGGTGCTCTGAAAAGCTCCTCTGAGTCTCCAGGCTCCACAAAAGCAAGCGAAGGGCATCAGGGTGACTCGCTGAGACAGGAACAAAGCCCCAGTTCAAGTCAGGCTAGCACTGTGGACTTGGGGCTGGGGGGCTCACAAAGTGATCCCTTGGTTCTTGGCATCAGTCCTCCTAGTCTAAGCACGCACAAACCTGATCCAAAAGATCAAGTATTAGATGATGTCTCCATTCAGAGTCCAGGGCCAAACTGTCAGAGGCAAAACTCAGTTGAAAGCGACCTAGATGCCAGGATCTCTGAACCTGCCGGTAAGGGACTGGAACTAAGTCAGACTAAAACAGAAGTGACTGACTCTTCCTCTGATGACTCTAAACCAACCAGTGCAGACGATGTTGGCATTTTGATCTGTAAGAGCAGAAAGCTGCACTCACAGGACGATAGCAGCACCGTTGTGTCTTCTTCCAAGAGTACTTTACCTGCATCAGTACCTAAAAGTCCCCGTGACAGAGATGCCCGGGCCTTCTCAAAAGCAGTGGACTTCGATGGGAGACTAGGTGGTGACTCTGAATATAGTAGCACTTTGGAAAATAGCTCTGATAATATGTGTATTCGGGACAGTGCTGAAGAAGATATGGTTGTTCAGAACAGCAGTGAAGCCACCTCGAAACGGTTCATAGCTCCAGAACAAGGAGGAGAAAGCGTGGAGTCGACAAAATGTCAGGTAGTTTCTAAGTCCACTGAAAACTGTGAAGACAAACTACAGGGTAAGGTAACTGAAGCAAACGGTAAGAAACTGGGCCAACATCCTCCAAAGCCAGAGGAGAGAGCAGTTAACAGATGTACTGACCAAGTCAGCCTGCGACACAGCGTTGACAGAAAGAACAGTGAACCTCGAGAGTCTGAAAAGAAAGGACAGAAAGCAAATAAATTTCAAATAAACGGCAAAGATAGCAAAGCTAAGGGGTACCTGAAGGGGCCGGGCACGAAGGACGGCTCTGATGGTAAAGTTGTGAGTAGTGCTGTAGAACCAAAGGTCAATAATATCAATAAAGTCATCCCTGGGAATACCAAGTCACTGGCTGGGAAGGAATCTGCTGCGAAGCCGTTCATCAACGGTGACATCATTATGGAAGAGTTGAGTGAACAAAACACTTCAGAAACCAACTCATACTCACTGAGTTCTTCAGATGCCAAAGGTAATCACCAAGATGGCCTCCATACCCTACCATCCACCAAAGAGTCTGCCAGTACCCAGGTAATCACACCCCGAGCCCCTTGTCCAGATCGGAACTCACTTAGTCAGGTAGAAGATATGGAAACTGAAAGTCCAGAGGTTAAGAGAGTTATCCCGTCTCCTGTTAGAACTGGAGAGGGCTCTAACCTTAGCAAGGGCTTCATGGATGACAATGGACTGCCTTCCAGCAAAGACGAGAACGTCAATGGAGAATCCCAAAGAAAGACGGTCATCACAGAAGTCACCACAATGACATCTACTGTTGCCACAGAATCAAAAACTGTCATTAAGGTAGCAAAAGGAGACAAGCAAACTGTGGTTTCTTCCACAGAAAATTGTGCCAGATCCACAGTCACAACTACCACTACCACTGTGACAAAGCTCTCCACACCCTCCCCAGACACCGGTGTGGATACCATCTCTGTAAAGGAGCAGAGTAAAACCGTGGTCACCACGACAGTGACGGACTCCTTGACCACTGCAGGAAGCACACTGGTGACATCTATGACCGTGAGCAAAGAGTACTCCACGAGAGACAGGGTAAAGCTGATGAAGTTCTCACGACCCAAGAAGACCCGCTCAGGCACTGCCCTGCCGTCCTATAGGAAGTTCGTTACCAAGAGCAGCAAAAAGAGCATATTTGTGTTACCTAATGATGACTTGAAAAAGCTGGCCAGGAAAGGAGGGATCCGGGAGGTCCCTTACTTTAATTATAACGCGAAACCTGCCTTGGATATATGGCCATACCCTTCTCCTAGACCGACCTTTGGTATCACATGGAGGTGA
Peptide sequence:
MKGNINNYFKLGQEGKYRVYHNQYSTNSFALNKHQHREDHDKRRHLAHKFCLTPAGEFKWNGSVHGSKVLTISTLRLTITQLESNIPSSFLHPNWASHRANWIKAVQMCSKPREFALALAILECAVKPVVMLPIWRESLGHTRLHRMTSIEREEKEKVKKKEKKQEEEETMQQATWVKYTFPVKHQVWKQKGEEYRVTGYGGWSWISKTHVYRFLPKLPGNTNVNYRKPLDGAKNNTDENKDESEKRKSPRSPKKMKTECDSEQGETRDADATAGAAAGAMELSKEPEKKDQDVKELLDSDNDKSFKEEPMEIDDTIKTESHVSSLESTEVDVVNVSEGFHLRTSYKKKTKSSKLDGLLERRIRQFTLEEKQRLEKLKLESGVKGAGKPPMGALKSSSESPGSTKASEGHQGDSLRQEQSPSSSQASTVDLGLGGSQSDPLVLGISPPSLSTHKPDPKDQVLDDVSIQSPGPNCQRQNSVESDLDARISEPAGKGLELSQTKTEVTDSSSDDSKPTSADDVGILICKSRKLHSQDDSSTVVSSSKSTLPASVPKSPRDRDARAFSKAVDFDGRLGGDSEYSSTLENSSDNMCIRDSAEEDMVVQNSSEATSKRFIAPEQGGESVESTKCQVVSKSTENCEDKLQGKVTEANGKKLGQHPPKPEERAVNRCTDQVSLRHSVDRKNSEPRESEKKGQKANKFQINGKDSKAKGYLKGPGTKDGSDGKVVSSAVEPKVNNINKVIPGNTKSLAGKESAAKPFINGDIIMEELSEQNTSETNSYSLSSSDAKGNHQDGLHTLPSTKESASTQVITPRAPCPDRNSLSQVEDMETESPEVKRVIPSPVRTGEGSNLSKGFMDDNGLPSSKDENVNGESQRKTVITEVTTMTSTVATESKTVIKVAKGDKQTVVSSTENCARSTVTTTTTTVTKLSTPSPDTGVDTISVKEQSKTVVTTTVTDSLTTAGSTLVTSMTVSKEYSTRDRVKLMKFSRPKKTRSGTALPSYRKFVTKSSKKSIFVLPNDDLKKLARKGGIREVPYFNYNAKPALDIWPYPSPRPTFGITWR
IRESfinder result
IRESfinder score
0.47194888
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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