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mmu_circBptf_2562
Basic information of circular RNA
PanCircBase ID:
mmu_circBptf_2562
mm39_Chr. Position ID:
chr11|106957952|106965816|-
Gene name:
Bptf
Transcript:
ENSMUST00000057892.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
13,12,11
Exon/intron offsets:
0,1148,5556
Genomic length:
7864
Exon/intron sizes in nt:
1,29,12,52,308
Flanking exon/introns:
chr11:106956922-106957952|chr11:106965816-106967347
Splice length:
2562
Other database IDs:
CIRCpedia: MMU_CIRCpedia_2015, circAtlas: mmu-Bptf_0026
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
ATGTAAAAGAACTTTTAGATTCTGATAATGACAAATCCTTCAAGGAAGAACCAATGGAGATCGATGATACCATAAAAACAGAGTCACACGTGAGCAGTCTGGAAAGCACAGAGGTAGATGTAGTCAATGTTAGTGAGGGCTTCCATCTAAGGACTAGTTACAAAAAGAAAACGAAATCCTCTAAGCTGGACGGGCTTCTGGAACGGAGGATTCGACAATTTACACTGGAAGAAAAACAGCGTCTTGAGAAGTTAAAGCTGGAGAGTGGGGTGAAGGGGGCGGGGAAGCCCCCCATGGGTGCTCTGAAAAGCTCCTCTGAGTCTCCAGGCTCCACAAAAGCAAGCGAAGGGCATCAGGGTGACTCGCTGAGACAGGAACAAAGCCCCAGTTCAAGTCAGGCTAGCACTGTGGACTTGGGGCTGGGGGGCTCACAAAGTGATCCCTTGGTTCTTGGCATCAGTCCTCCTAGTCTAAGCACGCACAAACCTGATCCAAAAGATCAAGTATTAGATGATGTCTCCATTCAGAGTCCAGGGCCAAACTGTCAGAGGCAAAACTCAGTTGAAAGCGACCTAGATGCCAGGATCTCTGAACCTGCCGGTAAGGGACTGGAACTAAGTCAGACTAAAACAGAAGTGACTGACTCTTCCTCTGATGACTCTAAACCAACCAGTGCAGACGATGTTGGCATTTTGATCTGTAAGAGCAGAAAGCTGCACTCACAGGACGATAGCAGCACCGTTGTGTCTTCTTCCAAGAGTACTTTACCTGCATCAGTACCTAAAAGTCCCCGTGACAGAGATGCCCGGGCCTTCTCAAAAGCAGTGGACTTCGATGGGAGACTAGGTGGTGACTCTGAATATAGTAGCACTTTGGAAAATAGCTCTGATAATATGTGTATTCGGGACAGTGCTGAAGAAGATATGGTTGTTCAGAACAGCAGTGAAGCCACCTCGAAACGGTTCATAGCTCCAGAACAAGGAGGAGAAAGCGTGGAGTCGACAAAATGTCAGGTAGTTTCTAAGTCCACTGAAAACTGTGAAGACAAACTACAGGGTAAGGTAACTGAAGCAAACGGTAAGAAACTGGGCCAACATCCTCCAAAGCCAGAGGAGAGAGCAGTTAACAGATGTACTGACCAAGTCAGCCTGCGACACAGCGTTGACAGAAAGAACAGTGAACCTCGAGAGTCTGAAAAGAAAGGACAGAAAGCAAATAAATTTCAAATAAACGGCAAAGATAGCAAAGCTAAGGGGTACCTGAAGGGGCCGGGCACGAAGGACGGCTCTGATGGTAAAGTTGTGAGTAGTGCTGTAGAACCAAAGGTCAATAATATCAATAAAGTCATCCCTGGGAATACCAAGTCACTGGCTGGGAAGGAATCTGCTGCGAAGCCGTTCATCAACGGTGACATCATTATGGAAGAGTTGAGTGAACAAAACACTTCAGAAACCAACTCATACTCACTGAGTTCTTCAGATGCCAAAGGTAATCACCAAGATGGCCTCCATACCCTACCATCCACCAAAGAGTCTGCCAGTACCCAGGTAATCACACCCCGAGCCCCTTGTCCAGATCGGAACTCACTTAGTCAGGTAGAAGATATGGAAACTGAAAGTCCAGAGGTTAAGAGAGTTATCCCGTCTCCTGTTAGAACTGGAGAGGGCTCTAACCTTAGCAAGGGCTTCATGGATGACAATGGACTGCCTTCCAGCAAAGACGAGAACGTCAATGGAGAATCCCAAAGAAAGACGGTCATCACAGAAGTCACCACAATGACATCTACTGTTGCCACAGAATCAAAAACTGTCATTAAGGTAGCAAAAGGAGACAAGCAAACTGTGGTTTCTTCCACAGAAAATTGTGCCAGATCCACAGTCACAACTACCACTACCACTGTGACAAAGCTCTCCACACCCTCCCCAGACACCGGTGTGGATACCATCTCTGTAAAGGAGCAGAGTAAAACCGTGGTCACCACGACAGTGACGGACTCCTTGACCACTGCAGGAAGCACACTGGTGACATCTATGACCGTGAGCAAAGAGTACTCCACGAGAGACAGGGTAAAGCTGATGAAGTTCTCACGACCCAAGAAGACCCGCTCAGGCACTGCCCTGCCGTCCTATAGGAAGTTCGTTACCAAGAGCAGCAAAAAGAGCATATTTGTGTTACCTAATGATGACTTGAAAAAGCTGGCCAGGAAAGGAGGGATCCGGGAGGTCCCTTACTTTAATTATAACGCGAAACCTGCCTTGGATATATGGCCATACCCTTCTCCTAGACCGACCTTTGGTATCACATGGAGGTATAGACTACAGACGGTAAAGTCCTTGGCTGGAGTGAGCCTGATGTTACGGTTGCTGTGGGCCAGTTTGAGATGGGATGACATGGCAGCCAAGGCTCCTCCAGGAGGAGGGTCTACACGGACAGAAACATCTGAAACTGAAATCACAACCACTGAGATAATTAAGAGGCGTGATGTGGGCCCTTATGGCATTCGTTCTGAGTATTGTATCAGGAAGATCATTTGCCCCATTGGAGTTCCAGAAGCACCAAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCAGGAAGATCATTTGCCCCA
59.36
CTGCTCACGTGTGACTCTGT
59.97
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCAGGAAGATCATTTGCCCCA
59.36
ACTGCTCACGTGTGACTCTG
59.97
143
PCR template sequence:
GAGATAATTAAGAGGCGTGATGTGGGCCCTTATGGCATTCGTTCTGAGTATTGTATCAGGAAGATCATTTGCCCCATTGGAGTTCCAGAAGCACCAAAAGATGTAAAAGAACTTTTAGATTCTGATAATGACAAATCCTTCAAGGAAGAACCAATGGAGATCGATGATACCATAAAAACAGAGTCACACGTGAGCAGTCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
30
Interacting miRNAs (#binding sites)
mmu-miR-680(2), mmu-miR-1904(2), mmu-miR-9-5p(1), mmu-miR-20b-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-375-3p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-101a-3p(1), mmu-miR-106b-5p(1), mmu-miR-222-3p(1), mmu-miR-339-5p(1), mmu-miR-10b-5p(1), mmu-miR-139-5p(1), mmu-miR-10a-5p(1), mmu-miR-136-5p(1), mmu-miR-127-3p(1), mmu-miR-676-3p(1), mmu-miR-483-5p(1), mmu-miR-182-5p(1), mmu-miR-34b-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-129-5p(1), mmu-miR-484(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GAAGCACCAAAAGATGTAAAAGAACT
siRNA sets
GTTCTTTTACATCTTTTGG, TTCTTTTACATCTTTTGGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBPTF_2562_ORF_1
1.0524
0.205280878
1
5070
ORF sequence:
ATGGAGATCGATGATACCATAAAAACAGAGTCACACGTGAGCAGTCTGGAAAGCACAGAGGTAGATGTAGTCAATGTTAGTGAGGGCTTCCATCTAAGGACTAGTTACAAAAAGAAAACGAAATCCTCTAAGCTGGACGGGCTTCTGGAACGGAGGATTCGACAATTTACACTGGAAGAAAAACAGCGTCTTGAGAAGTTAAAGCTGGAGAGTGGGGTGAAGGGGGCGGGGAAGCCCCCCATGGGTGCTCTGAAAAGCTCCTCTGAGTCTCCAGGCTCCACAAAAGCAAGCGAAGGGCATCAGGGTGACTCGCTGAGACAGGAACAAAGCCCCAGTTCAAGTCAGGCTAGCACTGTGGACTTGGGGCTGGGGGGCTCACAAAGTGATCCCTTGGTTCTTGGCATCAGTCCTCCTAGTCTAAGCACGCACAAACCTGATCCAAAAGATCAAGTATTAGATGATGTCTCCATTCAGAGTCCAGGGCCAAACTGTCAGAGGCAAAACTCAGTTGAAAGCGACCTAGATGCCAGGATCTCTGAACCTGCCGGTAAGGGACTGGAACTAAGTCAGACTAAAACAGAAGTGACTGACTCTTCCTCTGATGACTCTAAACCAACCAGTGCAGACGATGTTGGCATTTTGATCTGTAAGAGCAGAAAGCTGCACTCACAGGACGATAGCAGCACCGTTGTGTCTTCTTCCAAGAGTACTTTACCTGCATCAGTACCTAAAAGTCCCCGTGACAGAGATGCCCGGGCCTTCTCAAAAGCAGTGGACTTCGATGGGAGACTAGGTGGTGACTCTGAATATAGTAGCACTTTGGAAAATAGCTCTGATAATATGTGTATTCGGGACAGTGCTGAAGAAGATATGGTTGTTCAGAACAGCAGTGAAGCCACCTCGAAACGGTTCATAGCTCCAGAACAAGGAGGAGAAAGCGTGGAGTCGACAAAATGTCAGGTAGTTTCTAAGTCCACTGAAAACTGTGAAGACAAACTACAGGGTAAGGTAACTGAAGCAAACGGTAAGAAACTGGGCCAACATCCTCCAAAGCCAGAGGAGAGAGCAGTTAACAGATGTACTGACCAAGTCAGCCTGCGACACAGCGTTGACAGAAAGAACAGTGAACCTCGAGAGTCTGAAAAGAAAGGACAGAAAGCAAATAAATTTCAAATAAACGGCAAAGATAGCAAAGCTAAGGGGTACCTGAAGGGGCCGGGCACGAAGGACGGCTCTGATGGTAAAGTTGTGAGTAGTGCTGTAGAACCAAAGGTCAATAATATCAATAAAGTCATCCCTGGGAATACCAAGTCACTGGCTGGGAAGGAATCTGCTGCGAAGCCGTTCATCAACGGTGACATCATTATGGAAGAGTTGAGTGAACAAAACACTTCAGAAACCAACTCATACTCACTGAGTTCTTCAGATGCCAAAGGTAATCACCAAGATGGCCTCCATACCCTACCATCCACCAAAGAGTCTGCCAGTACCCAGGTAATCACACCCCGAGCCCCTTGTCCAGATCGGAACTCACTTAGTCAGGTAGAAGATATGGAAACTGAAAGTCCAGAGGTTAAGAGAGTTATCCCGTCTCCTGTTAGAACTGGAGAGGGCTCTAACCTTAGCAAGGGCTTCATGGATGACAATGGACTGCCTTCCAGCAAAGACGAGAACGTCAATGGAGAATCCCAAAGAAAGACGGTCATCACAGAAGTCACCACAATGACATCTACTGTTGCCACAGAATCAAAAACTGTCATTAAGGTAGCAAAAGGAGACAAGCAAACTGTGGTTTCTTCCACAGAAAATTGTGCCAGATCCACAGTCACAACTACCACTACCACTGTGACAAAGCTCTCCACACCCTCCCCAGACACCGGTGTGGATACCATCTCTGTAAAGGAGCAGAGTAAAACCGTGGTCACCACGACAGTGACGGACTCCTTGACCACTGCAGGAAGCACACTGGTGACATCTATGACCGTGAGCAAAGAGTACTCCACGAGAGACAGGGTAAAGCTGATGAAGTTCTCACGACCCAAGAAGACCCGCTCAGGCACTGCCCTGCCGTCCTATAGGAAGTTCGTTACCAAGAGCAGCAAAAAGAGCATATTTGTGTTACCTAATGATGACTTGAAAAAGCTGGCCAGGAAAGGAGGGATCCGGGAGGTCCCTTACTTTAATTATAACGCGAAACCTGCCTTGGATATATGGCCATACCCTTCTCCTAGACCGACCTTTGGTATCACATGGAGGTATAGACTACAGACGGTAAAGTCCTTGGCTGGAGTGAGCCTGATGTTACGGTTGCTGTGGGCCAGTTTGAGATGGGATGACATGGCAGCCAAGGCTCCTCCAGGAGGAGGGTCTACACGGACAGAAACATCTGAAACTGAAATCACAACCACTGAGATAATTAAGAGGCGTGATGTGGGCCCTTATGGCATTCGTTCTGAGTATTGTATCAGGAAGATCATTTGCCCCATTGGAGTTCCAGAAGCACCAAAAGATGTAAAAGAACTTTTAGATTCTGATAATGACAAATCCTTCAAGGAAGAACCAATGGAGATCGATGATACCATAAAAACAGAGTCACACGTGAGCAGTCTGGAAAGCACAGAGGTAGATGTAGTCAATGTTAGTGAGGGCTTCCATCTAAGGACTAGTTACAAAAAGAAAACGAAATCCTCTAAGCTGGACGGGCTTCTGGAACGGAGGATTCGACAATTTACACTGGAAGAAAAACAGCGTCTTGAGAAGTTAAAGCTGGAGAGTGGGGTGAAGGGGGCGGGGAAGCCCCCCATGGGTGCTCTGAAAAGCTCCTCTGAGTCTCCAGGCTCCACAAAAGCAAGCGAAGGGCATCAGGGTGACTCGCTGAGACAGGAACAAAGCCCCAGTTCAAGTCAGGCTAGCACTGTGGACTTGGGGCTGGGGGGCTCACAAAGTGATCCCTTGGTTCTTGGCATCAGTCCTCCTAGTCTAAGCACGCACAAACCTGATCCAAAAGATCAAGTATTAGATGATGTCTCCATTCAGAGTCCAGGGCCAAACTGTCAGAGGCAAAACTCAGTTGAAAGCGACCTAGATGCCAGGATCTCTGAACCTGCCGGTAAGGGACTGGAACTAAGTCAGACTAAAACAGAAGTGACTGACTCTTCCTCTGATGACTCTAAACCAACCAGTGCAGACGATGTTGGCATTTTGATCTGTAAGAGCAGAAAGCTGCACTCACAGGACGATAGCAGCACCGTTGTGTCTTCTTCCAAGAGTACTTTACCTGCATCAGTACCTAAAAGTCCCCGTGACAGAGATGCCCGGGCCTTCTCAAAAGCAGTGGACTTCGATGGGAGACTAGGTGGTGACTCTGAATATAGTAGCACTTTGGAAAATAGCTCTGATAATATGTGTATTCGGGACAGTGCTGAAGAAGATATGGTTGTTCAGAACAGCAGTGAAGCCACCTCGAAACGGTTCATAGCTCCAGAACAAGGAGGAGAAAGCGTGGAGTCGACAAAATGTCAGGTAGTTTCTAAGTCCACTGAAAACTGTGAAGACAAACTACAGGGTAAGGTAACTGAAGCAAACGGTAAGAAACTGGGCCAACATCCTCCAAAGCCAGAGGAGAGAGCAGTTAACAGATGTACTGACCAAGTCAGCCTGCGACACAGCGTTGACAGAAAGAACAGTGAACCTCGAGAGTCTGAAAAGAAAGGACAGAAAGCAAATAAATTTCAAATAAACGGCAAAGATAGCAAAGCTAAGGGGTACCTGAAGGGGCCGGGCACGAAGGACGGCTCTGATGGTAAAGTTGTGAGTAGTGCTGTAGAACCAAAGGTCAATAATATCAATAAAGTCATCCCTGGGAATACCAAGTCACTGGCTGGGAAGGAATCTGCTGCGAAGCCGTTCATCAACGGTGACATCATTATGGAAGAGTTGAGTGAACAAAACACTTCAGAAACCAACTCATACTCACTGAGTTCTTCAGATGCCAAAGGTAATCACCAAGATGGCCTCCATACCCTACCATCCACCAAAGAGTCTGCCAGTACCCAGGTAATCACACCCCGAGCCCCTTGTCCAGATCGGAACTCACTTAGTCAGGTAGAAGATATGGAAACTGAAAGTCCAGAGGTTAAGAGAGTTATCCCGTCTCCTGTTAGAACTGGAGAGGGCTCTAACCTTAGCAAGGGCTTCATGGATGACAATGGACTGCCTTCCAGCAAAGACGAGAACGTCAATGGAGAATCCCAAAGAAAGACGGTCATCACAGAAGTCACCACAATGACATCTACTGTTGCCACAGAATCAAAAACTGTCATTAAGGTAGCAAAAGGAGACAAGCAAACTGTGGTTTCTTCCACAGAAAATTGTGCCAGATCCACAGTCACAACTACCACTACCACTGTGACAAAGCTCTCCACACCCTCCCCAGACACCGGTGTGGATACCATCTCTGTAAAGGAGCAGAGTAAAACCGTGGTCACCACGACAGTGACGGACTCCTTGACCACTGCAGGAAGCACACTGGTGACATCTATGACCGTGAGCAAAGAGTACTCCACGAGAGACAGGGTAAAGCTGATGAAGTTCTCACGACCCAAGAAGACCCGCTCAGGCACTGCCCTGCCGTCCTATAGGAAGTTCGTTACCAAGAGCAGCAAAAAGAGCATATTTGTGTTACCTAATGATGACTTGAAAAAGCTGGCCAGGAAAGGAGGGATCCGGGAGGTCCCTTACTTTAATTATAACGCGAAACCTGCCTTGGATATATGGCCATACCCTTCTCCTAGACCGACCTTTGGTATCACATGGAGGTATAGACTACAGACGGTAAAGTCCTTGGCTGGAGTGAGCCTGATGTTACGGTTGCTGTGGGCCAGTTTGAGATGGGATGACATGGCAGCCAAGGCTCCTCCAGGAGGAGGGTCTACACGGACAGAAACATCTGAAACTGAAATCACAACCACTGAGATAATTAAGAGGCGTGATGTGGGCCCTTATGGCATTCGTTCTGAGTATTGTATCAGGAAGATCATTTGCCCCATTGGAGTTCCAGAAGCACCAAAA
Peptide sequence:
MEIDDTIKTESHVSSLESTEVDVVNVSEGFHLRTSYKKKTKSSKLDGLLERRIRQFTLEEKQRLEKLKLESGVKGAGKPPMGALKSSSESPGSTKASEGHQGDSLRQEQSPSSSQASTVDLGLGGSQSDPLVLGISPPSLSTHKPDPKDQVLDDVSIQSPGPNCQRQNSVESDLDARISEPAGKGLELSQTKTEVTDSSSDDSKPTSADDVGILICKSRKLHSQDDSSTVVSSSKSTLPASVPKSPRDRDARAFSKAVDFDGRLGGDSEYSSTLENSSDNMCIRDSAEEDMVVQNSSEATSKRFIAPEQGGESVESTKCQVVSKSTENCEDKLQGKVTEANGKKLGQHPPKPEERAVNRCTDQVSLRHSVDRKNSEPRESEKKGQKANKFQINGKDSKAKGYLKGPGTKDGSDGKVVSSAVEPKVNNINKVIPGNTKSLAGKESAAKPFINGDIIMEELSEQNTSETNSYSLSSSDAKGNHQDGLHTLPSTKESASTQVITPRAPCPDRNSLSQVEDMETESPEVKRVIPSPVRTGEGSNLSKGFMDDNGLPSSKDENVNGESQRKTVITEVTTMTSTVATESKTVIKVAKGDKQTVVSSTENCARSTVTTTTTTVTKLSTPSPDTGVDTISVKEQSKTVVTTTVTDSLTTAGSTLVTSMTVSKEYSTRDRVKLMKFSRPKKTRSGTALPSYRKFVTKSSKKSIFVLPNDDLKKLARKGGIREVPYFNYNAKPALDIWPYPSPRPTFGITWRYRLQTVKSLAGVSLMLRLLWASLRWDDMAAKAPPGGGSTRTETSETEITTTEIIKRRDVGPYGIRSEYCIRKIICPIGVPEAPKDVKELLDSDNDKSFKEEPMEIDDTIKTESHVSSLESTEVDVVNVSEGFHLRTSYKKKTKSSKLDGLLERRIRQFTLEEKQRLEKLKLESGVKGAGKPPMGALKSSSESPGSTKASEGHQGDSLRQEQSPSSSQASTVDLGLGGSQSDPLVLGISPPSLSTHKPDPKDQVLDDVSIQSPGPNCQRQNSVESDLDARISEPAGKGLELSQTKTEVTDSSSDDSKPTSADDVGILICKSRKLHSQDDSSTVVSSSKSTLPASVPKSPRDRDARAFSKAVDFDGRLGGDSEYSSTLENSSDNMCIRDSAEEDMVVQNSSEATSKRFIAPEQGGESVESTKCQVVSKSTENCEDKLQGKVTEANGKKLGQHPPKPEERAVNRCTDQVSLRHSVDRKNSEPRESEKKGQKANKFQINGKDSKAKGYLKGPGTKDGSDGKVVSSAVEPKVNNINKVIPGNTKSLAGKESAAKPFINGDIIMEELSEQNTSETNSYSLSSSDAKGNHQDGLHTLPSTKESASTQVITPRAPCPDRNSLSQVEDMETESPEVKRVIPSPVRTGEGSNLSKGFMDDNGLPSSKDENVNGESQRKTVITEVTTMTSTVATESKTVIKVAKGDKQTVVSSTENCARSTVTTTTTTVTKLSTPSPDTGVDTISVKEQSKTVVTTTVTDSLTTAGSTLVTSMTVSKEYSTRDRVKLMKFSRPKKTRSGTALPSYRKFVTKSSKKSIFVLPNDDLKKLARKGGIREVPYFNYNAKPALDIWPYPSPRPTFGITWRYRLQTVKSLAGVSLMLRLLWASLRWDDMAAKAPPGGGSTRTETSETEITTTEIIKRRDVGPYGIRSEYCIRKIICPIGVPEAPK
IRESfinder result
IRESfinder score
0.437770254
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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