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mmu_circBirc6_5031
Basic information of circular RNA
PanCircBase ID:
mmu_circBirc6_5031
mm39_Chr. Position ID:
chr17|74925430|74959741|+
Gene name:
Birc6
Transcript:
ENSMUST00000180037.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
25
Exon/intron indexes:
32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56
Exon/intron offsets:
0,1271,3600,4473,5315,6670,8526,10969,12524,13175,16360,17327,19907,21344,23197,23825,24056,24859,28033,28768,29281,29682,31187,33472,34181
Genomic length:
34311
Exon/intron sizes in nt:
1,28,13,22,16,18,41,56,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr17:74922325-74925430|chr17:74959741-74961383
Splice length:
5031
Other database IDs:
circBase: hsa_circ_0053738, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_40858
Human Ortholog IDs:
Mature spliced Sequence:
GTAACCAATGGAGTTTTATTAACAATAATCTGCATACTCAGAACTTAAATAGATCCTCCAAGGGAGGCAGTAGCCTCGATAGATTATATTCCAGAAAAATCAGAAAGCAGCTTGTCCATCATAAGCAGCAACTTAACCTACTAAAGGCAAAACAGAAGGCTTTGGTGGAACAGATGGAAAAAGAAAAAATACAGAGTAACAAAGGCTCATCATATAAACTGCTAGTAGAGCAAGCAAAACTGAAGCAGGCGACCTCCAAGCATTTTAAGGATTTGATTCGCTTGCGCCGGACAGCAGAATGGTCTCGTTCTAATTTAGACACTGAAGTTACAACAACAAAAGAGAGCCCTGAGATTGAGCCTCTTCCATTTACTCTGGCCCATGACCGTTGTATCTCAGTAGTGCAAAAGCTCGTCCTGTTTCTTCTTTCCATGGATTTCACCTGCCATGCAGACCTCTTACTGTTTGTCTGCAAGGTTCTTGCACGCATTGCAAATGCGACCAGGCCAACTATTCATCTGTGTGAAATTGTGAATGAGCCGCAGTTAGAAAGACTGTTATTGCTTCTGGTTGGAACTGACTTCAACAGAGGAGACATCTCTTGGGGTGGTGCCTGGGCTCAGTATTCTTTAACCTGTATGCTGCAGGACATTCTAGCAGGAGAATTGTTGGCTCCGGTGGCTGCAGAAGCGATGGAAGAATGCACTGTGAGTGAGGATGTTGGTGCAACAGCTGGCGACTCTGATGACTCCCTGCAGCAGTCCCCCGCTCAGCTGCTGGAAACCATAGATGAACCATTGACACATGAGATAGCAGGTACGCCTCCTCTCTCTTCCTTGGAAAAAGATAAGGAAATTGACCTTGAGCTACTTCAAGACCTCATGGAAGTTGACATTGATCCTTTAGATATTGATCTAGAAAAGGATCCTCTTGCAGCCAAAGTTTTTAAGCCTATAAGCAGTACATGGTATGACTACTGGGGTGCTGATTATGGTACCTATAATTATAATCCTTACATTGGAGGCCTGGGGATGCCTGTAGCAAAACCACCATCAAACACAGAGAAGAATGGATCCCAGACTGTCAGTGTTTCGGTGTCTCAGGCTTTAGATGCTCGTCTAGAAGTTGGTCTTGAACAGCAAGCAGAACTTATGTTGAAAATGATGTCTACTCTGGAAGCAGACTCCATCTTACAAGCATTAACAAATACATCTCCTACCTTTTCACAATCTCCAACTGGAACAGATGACTCACTTCTGGGGAATTTACAGCCAGCAAACCAGAACAGCCAGCTCATGATACAGCTCTCATCTGTCCCAATGTTAAATGTTTGTTTCAATAAACTCTTCTCCATGCTTCAAGTCCATCATGTTCAGTTGGAGTCACTTCTTCAGTTGTGGCTCACATTGAGCCTTAATTCTAGTTCATCAGGGAACAAAGAGAATGGAGCAGATATTTTTTTATATAATGCTAATCGGATACCTGTCATCTCATTAAATCAAGCATCAATAGCTAGCTTTCTCACAGTGCTAGCTTGGTATCCAAATACTTTGCTCCGGACGTGGTGCCTTGTGCTTCATAGCTTAACACTCATGACGAATATGCAGCTTAATTCTGGTTCCAGCAGTTCTATTGGAATTCAGGAGACTACGGCTCATCTGTTGGTTTCAGATCCAAACCTTATTCATGTGTTAGTGAAATTTCTTTCTGGTACCAGTCCTCATGGGACGAATCAGCATAGCCCACAGGTTGGTCCAACAGCTACACAAGCCATGCAGGAATTTCTCACCCGACTACAAGTGCATTTGTCTTCAACATGTCCCCAGATATTCAGTGAACTTTTGCTCAAGTTAATTCACATACTGTCCACAGAAAGGGGGGCCTTCCAGACAGGGCAAGGACCTCTTGATGCCCAAGTGAAGCTGTTAGAGTTTACTCTGGAGCAGAACTTTGAAGTTGTCTCAGTTAGTACGATTTCTGCTGTGATAGAGTCTGTCACCTTCTTGGTGCATCATTACATCACTTGCTCCGACAAAGTCATGTCTAGAAGTGGGTCAGACAGCTCTGCCGGTGCTCGGGCTTGCTTTGGGGGACTCTTTGCTAACCTCATTCGTCCAGGTGATGCAAAAGCTGTTTGTGGTGAAATGACAAGAGATCAACTCATGTTTGATTTGTTAAAACTTGTTAACATTTTAGTACAGCTGCCTCTTTCAAGCAATAGGGAATACAGCGCAAGAGTGTCCGTGACCACCAATACAACAGATAGTGTTTCAGATGAAGAAAAAGTCTCAGGAGGCAAAGATGTCAATGGAAGCAGTGCCAGCACTCCAGGATCTCCTGCATGTGTTGCTGACTTAGTCTTAGCCAACCAGCAAATTATGAGCCAGATTCTGTCTGCCCTAGGCCTGTGTAATAGCAGTGCCATGGCAATGATAATTGGTGCAAGTGGCTTACATCTCACCAAACATGAGAACTTCCATGGTGGGTTAGATGCCATATCAGTTGGAGATGGATTATTTACCATATTGACAACACTTAGTAAGAAAGCCTCTACAGTCCACATGATGTTGCAGCCAATCTTGACCTACATGGCCTGTGGATACATGGGCAGACAAGGCTCTCTTGCTACTTGCCAGTTATCTGAGCCATTGTTGTGGTTTATCTTGAGAGTGTTGGATACTAGTGATGCATTGAAAGCTTTCCATGATATGGGTGGAGTTCAGCTCATATGCAATAATATGGTTACCAGTACAAGGGCTATTGTGAACACTGCAAGAAGTATGGTATCAACTATTATGAAATTTCTTGATTCTGGACCAAATAAAGCTGTTGACAGCACTTTGAAAACAAGGATCCTGGCCTCTGAGCCTGACAATGCAGAAGGAATCCATAACTTTGCACCACTTGGTACCATCACTTCTAGTAGTCCTACTGCCCAGCCAGCTGAGGTGCTCCTGCAAGCCACACCGCCCCATCGAAGAGCTCGTTCTGCTGCTTGGTCCTACATCTTTCTGCCTGAGGAAGCCTGGTGTGACCTTACCATCCACCTTCCGTCAGCAGTGCTGCTGAAGGAGATACACATTCAACCTCACCTCGCATCTCTCGCAACCTGCCCATCGTCAGTGTCTGTTGAAGTAAGTGCAGATGGTGTTAATATGCTCCCTTTGTCTACTCCTGTTGTCACAAGCGGTCTCACCTACATAAAAATTCAGCTTGTCAAAGCCGAAGTAGCTTCTGCTGTCTGCCTCAGACTCCATCGTCCTCGGGACGCCAGCACACTAGGCCTCTCACAGATTAAATTATTAGGCCTTACTGCTTTTGGTACCACCTCATCAGCCACAGTTAATAATCCCTTTCTTCCATCTGAAGATCAAGTTTCTAAAACAAGCATTGGATGGTTACGGTTATTACATCATTGCCTTACACATATAAGTGATCTAGAAGGGATGATGGCCAGTGCAGCTGCCCCTACTGCCAACCTGCTGCAGACTTGTGCTGCCTTACTGATGTCTCCATACTGTGGGATGCATTCCCCCAACATTGAGGTTGTGCTGGTAAAGATTGGGTTGCAGTCCACTAGAATTGGCCTGAAGCTTATTGACATTCTCCTGAGGAATTGCGCAGCATCAGGCAGCGATCCTACAGATTTAAATAGCCCTTTACTTTTTGGAAGGCTGAATGGACTGTCCTCTGATTCTACAATAGATATTCTTTACCAGCTTGGTACAACTCAGGATCCTGGAACTAAAGACAGAATTCAGGCCTTGCTAAAGTGGGTCAGTGACTCTGCAAAAATGGCTGCTTTGAAGAGAAGTGGCAGAATGAACTATATGTGCCCGAGCTCATCAGCTGTCGAGTATGGTCTTCTCATGCCATCCCCCTCTCATTTGCACTGTGTAGCAGCGATTCTTTGGCACAGTTATGAACTGCTGGTGGAGTATGATTTGCCAGCACTGCTAGACCGAGAGCTCTTTGAGTTACTTTTTAATTGGTCCATGTCACTTCCATGCAACGTGGTTTTGAAGAAAGCTGTTGACAGTCTGCTTTGCTCCATGTGCCATATACATCCAAATTATTTTTCCTTGCTCATGGGCTGGATGGGAATTATCCCTCCTCCGGTGCAGTGTCATCATAGACTATCCATGACAGATGATAGCAAGAAGCAAGATCTTAGTTCATCATTGACAGATGACTCCAAAAATGCACAAGCACCTCTGTCTCTAACTGAATCCCACTTGGCAACTCTTGCTTCTTCTTCTCAGTCCCCAGAAGCTATCAAACAGTTGCTAGACTCGGGGTTGCCTTCCCTTCTCGTGAGGAGTCTGGCTAGCTTTTGTTTTAGTCACATTTCTTACTCAGAAAGCATTGCCCAGTCAGTAGATAATTCCCAGGACAAACTCAGGCGGCATCACGTTCCACAGCACTGTAATAAGATGCCCATCACAGCAGACCTAGTGGCTCCCATCCTTAGGTTTTTGACAGAAGTTGGCAATAGTCATATCATGAAAGATTGGCTTGGTGGTTCTGAAGTCAACCCACTGTGGACAGCACTTCTGTTTTTGTTGTGTCACTCTGGGTCTACCGCTGGAGGACATAATTTAGGGGCACAGCAGAGCAGCACAAGGTCAGCTTCTCATTCTTCAGCTACTACAACAGTCCTGACCACCCAGCAACGGACAGCCATTGAGAACGCAACTGTTGCCTTCTTTCTGCAGTGTATTTCATGTCACCCCAATAACCAAAAGCTGATGGCACAGGTTCTCTGTGAACTGTTTCAGACAGCCCCTCAAAGGGGTAGCCTTCCAACATCTGGGAATATTTCCGGGTTTGTGCGAAGACTGTTTCTACAGTTGATGCTGGAGGATGAGAAGGTGACAATGTTTCTTCAGTCACCTTGCCCACTATATAAAGGAAGAATTAATGCAACTAGCCATGTCATCCAACACCCAATGTTTGGAGCAGGCCATAAGTTTCGTACTCTGCATTTGCCAGTCTCAACAACGTTGTCAGATGTGCTTGATAGAGTTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAATGTTTGGAGCAGGCCAT
59.1
GCTACTGCCTCCCTTGGA
58.27
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGCAGGCCATAAGTTTCG
58.98
GCTACTGCCTCCCTTGGA
58.27
150
PCR template sequence:
CATGTCATCCAACACCCAATGTTTGGAGCAGGCCATAAGTTTCGTACTCTGCATTTGCCAGTCTCAACAACGTTGTCAGATGTGCTTGATAGAGTTTCAGGTAACCAATGGAGTTTTATTAACAATAATCTGCATACTCAGAACTTAAATAGATCCTCCAAGGGAGGCAGTAGCCTCGATAGATTATATTCCAGAAAAAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
43
Interacting miRNAs (#binding sites)
mmu-miR-324-5p(2), mmu-miR-136-5p(2), mmu-miR-212-3p(2), mmu-miR-183-5p(2), mmu-miR-541-5p(2), mmu-miR-680(2), mmu-miR-1904(2), mmu-miR-3105-3p(2), mmu-miR-137-3p(1), mmu-miR-20b-5p(1), mmu-miR-155-5p(1), mmu-miR-200a-3p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-429-3p(1), mmu-let-7e-5p(1), mmu-miR-200c-3p(1), mmu-miR-15b-5p(1), mmu-miR-106b-5p(1), mmu-miR-33-5p(1), mmu-miR-130a-3p(1), mmu-miR-19a-3p(1), mmu-miR-132-3p(1), mmu-miR-709(1), mmu-miR-495-3p(1), mmu-miR-24-3p(1), mmu-miR-676-3p(1), mmu-miR-501-3p(1), mmu-miR-199b-3p(1), mmu-miR-130b-3p(1), mmu-miR-721(1), mmu-miR-199a-3p(1), mmu-miR-362-5p(1), mmu-miR-499-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-539-5p(1), mmu-miR-484(1), mmu-miR-3065-5p(1), mmu-miR-339-3p(1), mmu-miR-338-3p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GATAGAGTTTCAGGTAACCAATGGAG
siRNA sets
ATTGGTTACCTGAAACTCT, TTGGTTACCTGAAACTCTA, CATTGGTTACCTGAAACTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBIRC6_5031_ORF_1
0.8541
0.019946659
1
9888
ORF sequence:
ATGGAAAAAGAAAAAATACAGAGTAACAAAGGCTCATCATATAAACTGCTAGTAGAGCAAGCAAAACTGAAGCAGGCGACCTCCAAGCATTTTAAGGATTTGATTCGCTTGCGCCGGACAGCAGAATGGTCTCGTTCTAATTTAGACACTGAAGTTACAACAACAAAAGAGAGCCCTGAGATTGAGCCTCTTCCATTTACTCTGGCCCATGACCGTTGTATCTCAGTAGTGCAAAAGCTCGTCCTGTTTCTTCTTTCCATGGATTTCACCTGCCATGCAGACCTCTTACTGTTTGTCTGCAAGGTTCTTGCACGCATTGCAAATGCGACCAGGCCAACTATTCATCTGTGTGAAATTGTGAATGAGCCGCAGTTAGAAAGACTGTTATTGCTTCTGGTTGGAACTGACTTCAACAGAGGAGACATCTCTTGGGGTGGTGCCTGGGCTCAGTATTCTTTAACCTGTATGCTGCAGGACATTCTAGCAGGAGAATTGTTGGCTCCGGTGGCTGCAGAAGCGATGGAAGAATGCACTGTGAGTGAGGATGTTGGTGCAACAGCTGGCGACTCTGATGACTCCCTGCAGCAGTCCCCCGCTCAGCTGCTGGAAACCATAGATGAACCATTGACACATGAGATAGCAGGTACGCCTCCTCTCTCTTCCTTGGAAAAAGATAAGGAAATTGACCTTGAGCTACTTCAAGACCTCATGGAAGTTGACATTGATCCTTTAGATATTGATCTAGAAAAGGATCCTCTTGCAGCCAAAGTTTTTAAGCCTATAAGCAGTACATGGTATGACTACTGGGGTGCTGATTATGGTACCTATAATTATAATCCTTACATTGGAGGCCTGGGGATGCCTGTAGCAAAACCACCATCAAACACAGAGAAGAATGGATCCCAGACTGTCAGTGTTTCGGTGTCTCAGGCTTTAGATGCTCGTCTAGAAGTTGGTCTTGAACAGCAAGCAGAACTTATGTTGAAAATGATGTCTACTCTGGAAGCAGACTCCATCTTACAAGCATTAACAAATACATCTCCTACCTTTTCACAATCTCCAACTGGAACAGATGACTCACTTCTGGGGAATTTACAGCCAGCAAACCAGAACAGCCAGCTCATGATACAGCTCTCATCTGTCCCAATGTTAAATGTTTGTTTCAATAAACTCTTCTCCATGCTTCAAGTCCATCATGTTCAGTTGGAGTCACTTCTTCAGTTGTGGCTCACATTGAGCCTTAATTCTAGTTCATCAGGGAACAAAGAGAATGGAGCAGATATTTTTTTATATAATGCTAATCGGATACCTGTCATCTCATTAAATCAAGCATCAATAGCTAGCTTTCTCACAGTGCTAGCTTGGTATCCAAATACTTTGCTCCGGACGTGGTGCCTTGTGCTTCATAGCTTAACACTCATGACGAATATGCAGCTTAATTCTGGTTCCAGCAGTTCTATTGGAATTCAGGAGACTACGGCTCATCTGTTGGTTTCAGATCCAAACCTTATTCATGTGTTAGTGAAATTTCTTTCTGGTACCAGTCCTCATGGGACGAATCAGCATAGCCCACAGGTTGGTCCAACAGCTACACAAGCCATGCAGGAATTTCTCACCCGACTACAAGTGCATTTGTCTTCAACATGTCCCCAGATATTCAGTGAACTTTTGCTCAAGTTAATTCACATACTGTCCACAGAAAGGGGGGCCTTCCAGACAGGGCAAGGACCTCTTGATGCCCAAGTGAAGCTGTTAGAGTTTACTCTGGAGCAGAACTTTGAAGTTGTCTCAGTTAGTACGATTTCTGCTGTGATAGAGTCTGTCACCTTCTTGGTGCATCATTACATCACTTGCTCCGACAAAGTCATGTCTAGAAGTGGGTCAGACAGCTCTGCCGGTGCTCGGGCTTGCTTTGGGGGACTCTTTGCTAACCTCATTCGTCCAGGTGATGCAAAAGCTGTTTGTGGTGAAATGACAAGAGATCAACTCATGTTTGATTTGTTAAAACTTGTTAACATTTTAGTACAGCTGCCTCTTTCAAGCAATAGGGAATACAGCGCAAGAGTGTCCGTGACCACCAATACAACAGATAGTGTTTCAGATGAAGAAAAAGTCTCAGGAGGCAAAGATGTCAATGGAAGCAGTGCCAGCACTCCAGGATCTCCTGCATGTGTTGCTGACTTAGTCTTAGCCAACCAGCAAATTATGAGCCAGATTCTGTCTGCCCTAGGCCTGTGTAATAGCAGTGCCATGGCAATGATAATTGGTGCAAGTGGCTTACATCTCACCAAACATGAGAACTTCCATGGTGGGTTAGATGCCATATCAGTTGGAGATGGATTATTTACCATATTGACAACACTTAGTAAGAAAGCCTCTACAGTCCACATGATGTTGCAGCCAATCTTGACCTACATGGCCTGTGGATACATGGGCAGACAAGGCTCTCTTGCTACTTGCCAGTTATCTGAGCCATTGTTGTGGTTTATCTTGAGAGTGTTGGATACTAGTGATGCATTGAAAGCTTTCCATGATATGGGTGGAGTTCAGCTCATATGCAATAATATGGTTACCAGTACAAGGGCTATTGTGAACACTGCAAGAAGTATGGTATCAACTATTATGAAATTTCTTGATTCTGGACCAAATAAAGCTGTTGACAGCACTTTGAAAACAAGGATCCTGGCCTCTGAGCCTGACAATGCAGAAGGAATCCATAACTTTGCACCACTTGGTACCATCACTTCTAGTAGTCCTACTGCCCAGCCAGCTGAGGTGCTCCTGCAAGCCACACCGCCCCATCGAAGAGCTCGTTCTGCTGCTTGGTCCTACATCTTTCTGCCTGAGGAAGCCTGGTGTGACCTTACCATCCACCTTCCGTCAGCAGTGCTGCTGAAGGAGATACACATTCAACCTCACCTCGCATCTCTCGCAACCTGCCCATCGTCAGTGTCTGTTGAAGTAAGTGCAGATGGTGTTAATATGCTCCCTTTGTCTACTCCTGTTGTCACAAGCGGTCTCACCTACATAAAAATTCAGCTTGTCAAAGCCGAAGTAGCTTCTGCTGTCTGCCTCAGACTCCATCGTCCTCGGGACGCCAGCACACTAGGCCTCTCACAGATTAAATTATTAGGCCTTACTGCTTTTGGTACCACCTCATCAGCCACAGTTAATAATCCCTTTCTTCCATCTGAAGATCAAGTTTCTAAAACAAGCATTGGATGGTTACGGTTATTACATCATTGCCTTACACATATAAGTGATCTAGAAGGGATGATGGCCAGTGCAGCTGCCCCTACTGCCAACCTGCTGCAGACTTGTGCTGCCTTACTGATGTCTCCATACTGTGGGATGCATTCCCCCAACATTGAGGTTGTGCTGGTAAAGATTGGGTTGCAGTCCACTAGAATTGGCCTGAAGCTTATTGACATTCTCCTGAGGAATTGCGCAGCATCAGGCAGCGATCCTACAGATTTAAATAGCCCTTTACTTTTTGGAAGGCTGAATGGACTGTCCTCTGATTCTACAATAGATATTCTTTACCAGCTTGGTACAACTCAGGATCCTGGAACTAAAGACAGAATTCAGGCCTTGCTAAAGTGGGTCAGTGACTCTGCAAAAATGGCTGCTTTGAAGAGAAGTGGCAGAATGAACTATATGTGCCCGAGCTCATCAGCTGTCGAGTATGGTCTTCTCATGCCATCCCCCTCTCATTTGCACTGTGTAGCAGCGATTCTTTGGCACAGTTATGAACTGCTGGTGGAGTATGATTTGCCAGCACTGCTAGACCGAGAGCTCTTTGAGTTACTTTTTAATTGGTCCATGTCACTTCCATGCAACGTGGTTTTGAAGAAAGCTGTTGACAGTCTGCTTTGCTCCATGTGCCATATACATCCAAATTATTTTTCCTTGCTCATGGGCTGGATGGGAATTATCCCTCCTCCGGTGCAGTGTCATCATAGACTATCCATGACAGATGATAGCAAGAAGCAAGATCTTAGTTCATCATTGACAGATGACTCCAAAAATGCACAAGCACCTCTGTCTCTAACTGAATCCCACTTGGCAACTCTTGCTTCTTCTTCTCAGTCCCCAGAAGCTATCAAACAGTTGCTAGACTCGGGGTTGCCTTCCCTTCTCGTGAGGAGTCTGGCTAGCTTTTGTTTTAGTCACATTTCTTACTCAGAAAGCATTGCCCAGTCAGTAGATAATTCCCAGGACAAACTCAGGCGGCATCACGTTCCACAGCACTGTAATAAGATGCCCATCACAGCAGACCTAGTGGCTCCCATCCTTAGGTTTTTGACAGAAGTTGGCAATAGTCATATCATGAAAGATTGGCTTGGTGGTTCTGAAGTCAACCCACTGTGGACAGCACTTCTGTTTTTGTTGTGTCACTCTGGGTCTACCGCTGGAGGACATAATTTAGGGGCACAGCAGAGCAGCACAAGGTCAGCTTCTCATTCTTCAGCTACTACAACAGTCCTGACCACCCAGCAACGGACAGCCATTGAGAACGCAACTGTTGCCTTCTTTCTGCAGTGTATTTCATGTCACCCCAATAACCAAAAGCTGATGGCACAGGTTCTCTGTGAACTGTTTCAGACAGCCCCTCAAAGGGGTAGCCTTCCAACATCTGGGAATATTTCCGGGTTTGTGCGAAGACTGTTTCTACAGTTGATGCTGGAGGATGAGAAGGTGACAATGTTTCTTCAGTCACCTTGCCCACTATATAAAGGAAGAATTAATGCAACTAGCCATGTCATCCAACACCCAATGTTTGGAGCAGGCCATAAGTTTCGTACTCTGCATTTGCCAGTCTCAACAACGTTGTCAGATGTGCTTGATAGAGTTTCAGGTAACCAATGGAGTTTTATTAACAATAATCTGCATACTCAGAACTTAAATAGATCCTCCAAGGGAGGCAGTAGCCTCGATAGATTATATTCCAGAAAAATCAGAAAGCAGCTTGTCCATCATAAGCAGCAACTTAACCTACTAAAGGCAAAACAGAAGGCTTTGGTGGAACAGATGGAAAAAGAAAAAATACAGAGTAACAAAGGCTCATCATATAAACTGCTAGTAGAGCAAGCAAAACTGAAGCAGGCGACCTCCAAGCATTTTAAGGATTTGATTCGCTTGCGCCGGACAGCAGAATGGTCTCGTTCTAATTTAGACACTGAAGTTACAACAACAAAAGAGAGCCCTGAGATTGAGCCTCTTCCATTTACTCTGGCCCATGACCGTTGTATCTCAGTAGTGCAAAAGCTCGTCCTGTTTCTTCTTTCCATGGATTTCACCTGCCATGCAGACCTCTTACTGTTTGTCTGCAAGGTTCTTGCACGCATTGCAAATGCGACCAGGCCAACTATTCATCTGTGTGAAATTGTGAATGAGCCGCAGTTAGAAAGACTGTTATTGCTTCTGGTTGGAACTGACTTCAACAGAGGAGACATCTCTTGGGGTGGTGCCTGGGCTCAGTATTCTTTAACCTGTATGCTGCAGGACATTCTAGCAGGAGAATTGTTGGCTCCGGTGGCTGCAGAAGCGATGGAAGAATGCACTGTGAGTGAGGATGTTGGTGCAACAGCTGGCGACTCTGATGACTCCCTGCAGCAGTCCCCCGCTCAGCTGCTGGAAACCATAGATGAACCATTGACACATGAGATAGCAGGTACGCCTCCTCTCTCTTCCTTGGAAAAAGATAAGGAAATTGACCTTGAGCTACTTCAAGACCTCATGGAAGTTGACATTGATCCTTTAGATATTGATCTAGAAAAGGATCCTCTTGCAGCCAAAGTTTTTAAGCCTATAAGCAGTACATGGTATGACTACTGGGGTGCTGATTATGGTACCTATAATTATAATCCTTACATTGGAGGCCTGGGGATGCCTGTAGCAAAACCACCATCAAACACAGAGAAGAATGGATCCCAGACTGTCAGTGTTTCGGTGTCTCAGGCTTTAGATGCTCGTCTAGAAGTTGGTCTTGAACAGCAAGCAGAACTTATGTTGAAAATGATGTCTACTCTGGAAGCAGACTCCATCTTACAAGCATTAACAAATACATCTCCTACCTTTTCACAATCTCCAACTGGAACAGATGACTCACTTCTGGGGAATTTACAGCCAGCAAACCAGAACAGCCAGCTCATGATACAGCTCTCATCTGTCCCAATGTTAAATGTTTGTTTCAATAAACTCTTCTCCATGCTTCAAGTCCATCATGTTCAGTTGGAGTCACTTCTTCAGTTGTGGCTCACATTGAGCCTTAATTCTAGTTCATCAGGGAACAAAGAGAATGGAGCAGATATTTTTTTATATAATGCTAATCGGATACCTGTCATCTCATTAAATCAAGCATCAATAGCTAGCTTTCTCACAGTGCTAGCTTGGTATCCAAATACTTTGCTCCGGACGTGGTGCCTTGTGCTTCATAGCTTAACACTCATGACGAATATGCAGCTTAATTCTGGTTCCAGCAGTTCTATTGGAATTCAGGAGACTACGGCTCATCTGTTGGTTTCAGATCCAAACCTTATTCATGTGTTAGTGAAATTTCTTTCTGGTACCAGTCCTCATGGGACGAATCAGCATAGCCCACAGGTTGGTCCAACAGCTACACAAGCCATGCAGGAATTTCTCACCCGACTACAAGTGCATTTGTCTTCAACATGTCCCCAGATATTCAGTGAACTTTTGCTCAAGTTAATTCACATACTGTCCACAGAAAGGGGGGCCTTCCAGACAGGGCAAGGACCTCTTGATGCCCAAGTGAAGCTGTTAGAGTTTACTCTGGAGCAGAACTTTGAAGTTGTCTCAGTTAGTACGATTTCTGCTGTGATAGAGTCTGTCACCTTCTTGGTGCATCATTACATCACTTGCTCCGACAAAGTCATGTCTAGAAGTGGGTCAGACAGCTCTGCCGGTGCTCGGGCTTGCTTTGGGGGACTCTTTGCTAACCTCATTCGTCCAGGTGATGCAAAAGCTGTTTGTGGTGAAATGACAAGAGATCAACTCATGTTTGATTTGTTAAAACTTGTTAACATTTTAGTACAGCTGCCTCTTTCAAGCAATAGGGAATACAGCGCAAGAGTGTCCGTGACCACCAATACAACAGATAGTGTTTCAGATGAAGAAAAAGTCTCAGGAGGCAAAGATGTCAATGGAAGCAGTGCCAGCACTCCAGGATCTCCTGCATGTGTTGCTGACTTAGTCTTAGCCAACCAGCAAATTATGAGCCAGATTCTGTCTGCCCTAGGCCTGTGTAATAGCAGTGCCATGGCAATGATAATTGGTGCAAGTGGCTTACATCTCACCAAACATGAGAACTTCCATGGTGGGTTAGATGCCATATCAGTTGGAGATGGATTATTTACCATATTGACAACACTTAGTAAGAAAGCCTCTACAGTCCACATGATGTTGCAGCCAATCTTGACCTACATGGCCTGTGGATACATGGGCAGACAAGGCTCTCTTGCTACTTGCCAGTTATCTGAGCCATTGTTGTGGTTTATCTTGAGAGTGTTGGATACTAGTGATGCATTGAAAGCTTTCCATGATATGGGTGGAGTTCAGCTCATATGCAATAATATGGTTACCAGTACAAGGGCTATTGTGAACACTGCAAGAAGTATGGTATCAACTATTATGAAATTTCTTGATTCTGGACCAAATAAAGCTGTTGACAGCACTTTGAAAACAAGGATCCTGGCCTCTGAGCCTGACAATGCAGAAGGAATCCATAACTTTGCACCACTTGGTACCATCACTTCTAGTAGTCCTACTGCCCAGCCAGCTGAGGTGCTCCTGCAAGCCACACCGCCCCATCGAAGAGCTCGTTCTGCTGCTTGGTCCTACATCTTTCTGCCTGAGGAAGCCTGGTGTGACCTTACCATCCACCTTCCGTCAGCAGTGCTGCTGAAGGAGATACACATTCAACCTCACCTCGCATCTCTCGCAACCTGCCCATCGTCAGTGTCTGTTGAAGTAAGTGCAGATGGTGTTAATATGCTCCCTTTGTCTACTCCTGTTGTCACAAGCGGTCTCACCTACATAAAAATTCAGCTTGTCAAAGCCGAAGTAGCTTCTGCTGTCTGCCTCAGACTCCATCGTCCTCGGGACGCCAGCACACTAGGCCTCTCACAGATTAAATTATTAGGCCTTACTGCTTTTGGTACCACCTCATCAGCCACAGTTAATAATCCCTTTCTTCCATCTGAAGATCAAGTTTCTAAAACAAGCATTGGATGGTTACGGTTATTACATCATTGCCTTACACATATAAGTGATCTAGAAGGGATGATGGCCAGTGCAGCTGCCCCTACTGCCAACCTGCTGCAGACTTGTGCTGCCTTACTGATGTCTCCATACTGTGGGATGCATTCCCCCAACATTGAGGTTGTGCTGGTAAAGATTGGGTTGCAGTCCACTAGAATTGGCCTGAAGCTTATTGACATTCTCCTGAGGAATTGCGCAGCATCAGGCAGCGATCCTACAGATTTAAATAGCCCTTTACTTTTTGGAAGGCTGAATGGACTGTCCTCTGATTCTACAATAGATATTCTTTACCAGCTTGGTACAACTCAGGATCCTGGAACTAAAGACAGAATTCAGGCCTTGCTAAAGTGGGTCAGTGACTCTGCAAAAATGGCTGCTTTGAAGAGAAGTGGCAGAATGAACTATATGTGCCCGAGCTCATCAGCTGTCGAGTATGGTCTTCTCATGCCATCCCCCTCTCATTTGCACTGTGTAGCAGCGATTCTTTGGCACAGTTATGAACTGCTGGTGGAGTATGATTTGCCAGCACTGCTAGACCGAGAGCTCTTTGAGTTACTTTTTAATTGGTCCATGTCACTTCCATGCAACGTGGTTTTGAAGAAAGCTGTTGACAGTCTGCTTTGCTCCATGTGCCATATACATCCAAATTATTTTTCCTTGCTCATGGGCTGGATGGGAATTATCCCTCCTCCGGTGCAGTGTCATCATAGACTATCCATGACAGATGATAGCAAGAAGCAAGATCTTAGTTCATCATTGACAGATGACTCCAAAAATGCACAAGCACCTCTGTCTCTAACTGAATCCCACTTGGCAACTCTTGCTTCTTCTTCTCAGTCCCCAGAAGCTATCAAACAGTTGCTAGACTCGGGGTTGCCTTCCCTTCTCGTGAGGAGTCTGGCTAGCTTTTGTTTTAGTCACATTTCTTACTCAGAAAGCATTGCCCAGTCAGTAGATAATTCCCAGGACAAACTCAGGCGGCATCACGTTCCACAGCACTGTAATAAGATGCCCATCACAGCAGACCTAGTGGCTCCCATCCTTAGGTTTTTGACAGAAGTTGGCAATAGTCATATCATGAAAGATTGGCTTGGTGGTTCTGAAGTCAACCCACTGTGGACAGCACTTCTGTTTTTGTTGTGTCACTCTGGGTCTACCGCTGGAGGACATAATTTAGGGGCACAGCAGAGCAGCACAAGGTCAGCTTCTCATTCTTCAGCTACTACAACAGTCCTGACCACCCAGCAACGGACAGCCATTGAGAACGCAACTGTTGCCTTCTTTCTGCAGTGTATTTCATGTCACCCCAATAACCAAAAGCTGATGGCACAGGTTCTCTGTGAACTGTTTCAGACAGCCCCTCAAAGGGGTAGCCTTCCAACATCTGGGAATATTTCCGGGTTTGTGCGAAGACTGTTTCTACAGTTGATGCTGGAGGATGAGAAGGTGACAATGTTTCTTCAGTCACCTTGCCCACTATATAAAGGAAGAATTAATGCAACTAGCCATGTCATCCAACACCCAATGTTTGGAGCAGGCCATAAGTTTCGTACTCTGCATTTGCCAGTCTCAACAACGTTGTCAGATGTGCTTGATAGAGTTTCA
Peptide sequence:
MEKEKIQSNKGSSYKLLVEQAKLKQATSKHFKDLIRLRRTAEWSRSNLDTEVTTTKESPEIEPLPFTLAHDRCISVVQKLVLFLLSMDFTCHADLLLFVCKVLARIANATRPTIHLCEIVNEPQLERLLLLLVGTDFNRGDISWGGAWAQYSLTCMLQDILAGELLAPVAAEAMEECTVSEDVGATAGDSDDSLQQSPAQLLETIDEPLTHEIAGTPPLSSLEKDKEIDLELLQDLMEVDIDPLDIDLEKDPLAAKVFKPISSTWYDYWGADYGTYNYNPYIGGLGMPVAKPPSNTEKNGSQTVSVSVSQALDARLEVGLEQQAELMLKMMSTLEADSILQALTNTSPTFSQSPTGTDDSLLGNLQPANQNSQLMIQLSSVPMLNVCFNKLFSMLQVHHVQLESLLQLWLTLSLNSSSSGNKENGADIFLYNANRIPVISLNQASIASFLTVLAWYPNTLLRTWCLVLHSLTLMTNMQLNSGSSSSIGIQETTAHLLVSDPNLIHVLVKFLSGTSPHGTNQHSPQVGPTATQAMQEFLTRLQVHLSSTCPQIFSELLLKLIHILSTERGAFQTGQGPLDAQVKLLEFTLEQNFEVVSVSTISAVIESVTFLVHHYITCSDKVMSRSGSDSSAGARACFGGLFANLIRPGDAKAVCGEMTRDQLMFDLLKLVNILVQLPLSSNREYSARVSVTTNTTDSVSDEEKVSGGKDVNGSSASTPGSPACVADLVLANQQIMSQILSALGLCNSSAMAMIIGASGLHLTKHENFHGGLDAISVGDGLFTILTTLSKKASTVHMMLQPILTYMACGYMGRQGSLATCQLSEPLLWFILRVLDTSDALKAFHDMGGVQLICNNMVTSTRAIVNTARSMVSTIMKFLDSGPNKAVDSTLKTRILASEPDNAEGIHNFAPLGTITSSSPTAQPAEVLLQATPPHRRARSAAWSYIFLPEEAWCDLTIHLPSAVLLKEIHIQPHLASLATCPSSVSVEVSADGVNMLPLSTPVVTSGLTYIKIQLVKAEVASAVCLRLHRPRDASTLGLSQIKLLGLTAFGTTSSATVNNPFLPSEDQVSKTSIGWLRLLHHCLTHISDLEGMMASAAAPTANLLQTCAALLMSPYCGMHSPNIEVVLVKIGLQSTRIGLKLIDILLRNCAASGSDPTDLNSPLLFGRLNGLSSDSTIDILYQLGTTQDPGTKDRIQALLKWVSDSAKMAALKRSGRMNYMCPSSSAVEYGLLMPSPSHLHCVAAILWHSYELLVEYDLPALLDRELFELLFNWSMSLPCNVVLKKAVDSLLCSMCHIHPNYFSLLMGWMGIIPPPVQCHHRLSMTDDSKKQDLSSSLTDDSKNAQAPLSLTESHLATLASSSQSPEAIKQLLDSGLPSLLVRSLASFCFSHISYSESIAQSVDNSQDKLRRHHVPQHCNKMPITADLVAPILRFLTEVGNSHIMKDWLGGSEVNPLWTALLFLLCHSGSTAGGHNLGAQQSSTRSASHSSATTTVLTTQQRTAIENATVAFFLQCISCHPNNQKLMAQVLCELFQTAPQRGSLPTSGNISGFVRRLFLQLMLEDEKVTMFLQSPCPLYKGRINATSHVIQHPMFGAGHKFRTLHLPVSTTLSDVLDRVSGNQWSFINNNLHTQNLNRSSKGGSSLDRLYSRKIRKQLVHHKQQLNLLKAKQKALVEQMEKEKIQSNKGSSYKLLVEQAKLKQATSKHFKDLIRLRRTAEWSRSNLDTEVTTTKESPEIEPLPFTLAHDRCISVVQKLVLFLLSMDFTCHADLLLFVCKVLARIANATRPTIHLCEIVNEPQLERLLLLLVGTDFNRGDISWGGAWAQYSLTCMLQDILAGELLAPVAAEAMEECTVSEDVGATAGDSDDSLQQSPAQLLETIDEPLTHEIAGTPPLSSLEKDKEIDLELLQDLMEVDIDPLDIDLEKDPLAAKVFKPISSTWYDYWGADYGTYNYNPYIGGLGMPVAKPPSNTEKNGSQTVSVSVSQALDARLEVGLEQQAELMLKMMSTLEADSILQALTNTSPTFSQSPTGTDDSLLGNLQPANQNSQLMIQLSSVPMLNVCFNKLFSMLQVHHVQLESLLQLWLTLSLNSSSSGNKENGADIFLYNANRIPVISLNQASIASFLTVLAWYPNTLLRTWCLVLHSLTLMTNMQLNSGSSSSIGIQETTAHLLVSDPNLIHVLVKFLSGTSPHGTNQHSPQVGPTATQAMQEFLTRLQVHLSSTCPQIFSELLLKLIHILSTERGAFQTGQGPLDAQVKLLEFTLEQNFEVVSVSTISAVIESVTFLVHHYITCSDKVMSRSGSDSSAGARACFGGLFANLIRPGDAKAVCGEMTRDQLMFDLLKLVNILVQLPLSSNREYSARVSVTTNTTDSVSDEEKVSGGKDVNGSSASTPGSPACVADLVLANQQIMSQILSALGLCNSSAMAMIIGASGLHLTKHENFHGGLDAISVGDGLFTILTTLSKKASTVHMMLQPILTYMACGYMGRQGSLATCQLSEPLLWFILRVLDTSDALKAFHDMGGVQLICNNMVTSTRAIVNTARSMVSTIMKFLDSGPNKAVDSTLKTRILASEPDNAEGIHNFAPLGTITSSSPTAQPAEVLLQATPPHRRARSAAWSYIFLPEEAWCDLTIHLPSAVLLKEIHIQPHLASLATCPSSVSVEVSADGVNMLPLSTPVVTSGLTYIKIQLVKAEVASAVCLRLHRPRDASTLGLSQIKLLGLTAFGTTSSATVNNPFLPSEDQVSKTSIGWLRLLHHCLTHISDLEGMMASAAAPTANLLQTCAALLMSPYCGMHSPNIEVVLVKIGLQSTRIGLKLIDILLRNCAASGSDPTDLNSPLLFGRLNGLSSDSTIDILYQLGTTQDPGTKDRIQALLKWVSDSAKMAALKRSGRMNYMCPSSSAVEYGLLMPSPSHLHCVAAILWHSYELLVEYDLPALLDRELFELLFNWSMSLPCNVVLKKAVDSLLCSMCHIHPNYFSLLMGWMGIIPPPVQCHHRLSMTDDSKKQDLSSSLTDDSKNAQAPLSLTESHLATLASSSQSPEAIKQLLDSGLPSLLVRSLASFCFSHISYSESIAQSVDNSQDKLRRHHVPQHCNKMPITADLVAPILRFLTEVGNSHIMKDWLGGSEVNPLWTALLFLLCHSGSTAGGHNLGAQQSSTRSASHSSATTTVLTTQQRTAIENATVAFFLQCISCHPNNQKLMAQVLCELFQTAPQRGSLPTSGNISGFVRRLFLQLMLEDEKVTMFLQSPCPLYKGRINATSHVIQHPMFGAGHKFRTLHLPVSTTLSDVLDRVS
IRESfinder result
IRESfinder score
0.688388181
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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