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mmu_circBirc6_376
Basic information of circular RNA
PanCircBase ID:
mmu_circBirc6_376
mm39_Chr. Position ID:
chr17|74892947|74896815|+
Gene name:
Birc6
Transcript:
ENSMUST00000180037.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
10,11
Exon/intron offsets:
0,3642
Genomic length:
3868
Exon/intron sizes in nt:
1,50,226
Flanking exon/introns:
chr17:74887557-74892947|chr17:74896815-74900083
Splice length:
376
Other database IDs:
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_40815
Human Ortholog IDs:
Mature spliced Sequence:
GTGGTGAGCTTCATTTTCTCCAAATTGGAGGAACCTGTGATGATATTGATGAAGCTGATATTCTGGTAGATGGATCCCTTTCTAAAGGAATAGAACCAGCTCTAGAAGGTTCCAGACCTTTATCAAATCCTTCAAGTCCTGGTATTTCAGGAGTTGAGTTATTGGTGGACCAGCCTTTCACACTTGAAATCTTGACGTCTTTAGTAGAACTAACTCGATTTGAAACACTGACTCCACGATTTTCAGCAACTGTTCCTCCATGTTGGGTAGAAGTTCAGCAAGAACAGCAGCAAAGAAGGCACCCGCAGCATCTGCACCAGCAGCACCACGGCGATGCTGCTCAGCACACCCGGACCTGGAAACTGCAGACCGACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCAAGAACAGCAGCAAAGA
58.32
TCACAGGTTCCTCCAATTTGGA
59.55
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCAAGAACAGCAGCAAAGAA
58.97
TCACAGGTTCCTCCAATTTGGA
59.55
140
PCR template sequence:
AGCAAGAACAGCAGCAAAGAAGGCACCCGCAGCATCTGCACCAGCAGCACCACGGCGATGCTGCTCAGCACACCCGGACCTGGAAACTGCAGACCGACAGGTGGTGAGCTTCATTTTCTCCAAATTGGAGGAACCTGTGATGATATTGATGAAGCTGATATTCTGGTAGATGGATCCCTTTCTAAAGGAATAGAACCAGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-15a-5p(1), mmu-miR-103-3p(1), mmu-miR-15b-5p(1), mmu-miR-127-5p(1), mmu-miR-541-5p(1), mmu-miR-107-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCAGACCGACAGGTGGTGAGCTTCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBIRC6_376_ORF_1
1.077
0.079059946
0.518642132
417
ORF sequence:
ATGCTGCTCAGCACACCCGGACCTGGAAACTGCAGACCGACAGGTGGTGAGCTTCATTTTCTCCAAATTGGAGGAACCTGTGATGATATTGATGAAGCTGATATTCTGGTAGATGGATCCCTTTCTAAAGGAATAGAACCAGCTCTAGAAGGTTCCAGACCTTTATCAAATCCTTCAAGTCCTGGTATTTCAGGAGTTGAGTTATTGGTGGACCAGCCTTTCACACTTGAAATCTTGACGTCTTTAGTAGAACTAACTCGATTTGAAACACTGACTCCACGATTTTCAGCAACTGTTCCTCCATGTTGGGTAGAAGTTCAGCAAGAACAGCAGCAAAGAAGGCACCCGCAGCATCTGCACCAGCAGCACCACGGCGATGCTGCTCAGCACACCCGGACCTGGAAACTGCAGACCGAC
Peptide sequence:
MLLSTPGPGNCRPTGGELHFLQIGGTCDDIDEADILVDGSLSKGIEPALEGSRPLSNPSSPGISGVELLVDQPFTLEILTSLVELTRFETLTPRFSATVPPCWVEVQQEQQQRRHPQHLHQQHHGDAAQHTRTWKLQTD
IRESfinder result
IRESfinder score
0.710716949
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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