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mmu_circBirc6_1398
Basic information of circular RNA
PanCircBase ID:
mmu_circBirc6_1398
mm39_Chr. Position ID:
chr17|74886159|74887557|+
Gene name:
Birc6
Transcript:
ENSMUST00000180037.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
1398
Exon/intron sizes in nt:
1398
Flanking exon/introns:
chr17:74880626-74886159|chr17:74887557-74892947
Splice length:
1398
Other database IDs:
circAtlas: mmu-Birc6_0011
circBase: hsa_circ_0053535, circAtlas: hsa-BIRC6_0011, CIRCpedia: HSA_CIRCpedia_40813
Human Ortholog IDs:
Mature spliced Sequence:
GGCATACATCACAGAAGGAAGCCATGGAAGTAAGCCTTGATATAACAGCTCTCAGCATTCTCCAGCAGCCAGAAAAACTGCAGTGGGAGATTGTGGCTAATGTGCTTGAAGATACTGTTAAGGATCTTGAAGAACTTGGGGCAAACCCCTCCCTAACGAACTCTAAGAGTGAAAAGACAAAGGAAAAGCACCAGGAACAACACAACATTCCCTTCCCCTGTTTATTGGCTGGAGGTTTATTAACATATAAGTCTCCTGCTACCTCACCCATTAGTAGTAATTCTCACAGGTCACTGGATGGTTTAAGCAGAACTCAGGGCGAAAGTATATCAGAACAAGGGTCAACTGACAATGAATCCTGCACAAATTCAGAGCTGAATTCTCCTCTGGTCAGGAGGACTTTACCTGTGTTACTTCTTTATAGTATCAAAGAATCTGATGAGAAAGCAGGAAAAATCTTTTCACAGATGAACAATATCATGAGTAAAAGTTTGCACGATGACGGTTTTACAGTTCCTCAGATTATTGAAATGGAGCTGGACAACCAGGAGCAGCTGTTGTTACAGGATCCGCCTGTGACTTACATCCAGCAGTTTGCAGATGCAGCCGCCAGCCTCACTTCTCCAGATTCCGAGAAGTGGAACTCTGTGTTCCCCAAGCCTGGGGCTTTGGTGCAGTGCTTGAGGCTACCAAAGTTTGCAGAGGAGGAGACTCTTTGTATAGACTCTATAACTCCTTGTGCTGATGGAATTCATTTGTTGGTAGGACTGCGGACATGCTCTGTGGAATCATTGAGTGCAATAAATCAAGTCGAGGCCTTGAATAATTTAAATAAATTAAACTCTGCACTATGTAATAGACGTAAAGGTGATCTGGAATCCAATCTTGCTGTAGTGAATGGTGCAAATATCAGTGTGATCCAACATGAGTCACCAGCAGATGTGCCGGAGCATCTGCTCATCCGGCCGGAGCAGAGGAATGTCGTCAGTGGTGGATATTTAGTTCTTTACAAGATGAACTATACCACTCGAATAGTGACTTTAGAAGAGGAGCCCGTGAAAATCCAACATATCAAAGATCCCCAGGACACAATTACCTCGCTCATTTTGCTTCCACCAGATATACTGGATAATCGAGAGGATGACTGTGAGGAACCTGCTGAGGAAATGCAGTTAGCCTCAAAGAATGGGATTGAAAGAGAAAAAAAGTCTGACATTTCTACGCTTGGACACCTGGTAGTAACCACTCAGGGAGGATACGTGAAAGTATTAGACCTTTCAAACTTCGAAATTTTGGCCAAAGTGGAGCCTCCCAAAAAGGAGGGCACTGAAGAACAGGATACATTTGTTTCTGTCATTTACTGCTCAGGCACAGACAGGCTGTGTGCGTGCACCAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCAAAAAGGAGGGCACTGA
60.18
CCCACTGCAGTTTTTCTGGC
59.97
175
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCCCAAAAAGGAGGGCACTG
60.18
CCCACTGCAGTTTTTCTGGC
59.97
176
PCR template sequence:
AAAGTGGAGCCTCCCAAAAAGGAGGGCACTGAAGAACAGGATACATTTGTTTCTGTCATTTACTGCTCAGGCACAGACAGGCTGTGTGCGTGCACCAAAGGGCATACATCACAGAAGGAAGCCATGGAAGTAAGCCTTGATATAACAGCTCTCAGCATTCTCCAGCAGCCAGAAAAACTGCAGTGGGAGATTGTGGCTAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
27
Interacting miRNAs (#binding sites)
mmu-miR-224-5p(2), mmu-miR-9-5p(1), mmu-miR-140-5p(1), mmu-let-7a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-135a-5p(1), mmu-let-7c-5p(1), mmu-miR-146a-5p(1), mmu-miR-19a-3p(1), mmu-miR-217-5p(1), mmu-miR-138-5p(1), mmu-miR-214-3p(1), mmu-let-7d-5p(1), mmu-miR-136-5p(1), mmu-miR-434-5p(1), mmu-miR-433-3p(1), mmu-miR-351-5p(1), mmu-miR-125a-5p(1), mmu-miR-382-3p(1), mmu-miR-340-5p(1), mmu-miR-98-5p(1), mmu-miR-190b-5p(1), mmu-miR-670-5p(1), mmu-miR-3105-3p(1), mmu-miR-146b-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCGTGCACCAAAGGGCATACATCACA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBIRC6_1398_ORF_1
1.0434
0.117879346
0.999999963
2772
ORF sequence:
ATGGAAGTAAGCCTTGATATAACAGCTCTCAGCATTCTCCAGCAGCCAGAAAAACTGCAGTGGGAGATTGTGGCTAATGTGCTTGAAGATACTGTTAAGGATCTTGAAGAACTTGGGGCAAACCCCTCCCTAACGAACTCTAAGAGTGAAAAGACAAAGGAAAAGCACCAGGAACAACACAACATTCCCTTCCCCTGTTTATTGGCTGGAGGTTTATTAACATATAAGTCTCCTGCTACCTCACCCATTAGTAGTAATTCTCACAGGTCACTGGATGGTTTAAGCAGAACTCAGGGCGAAAGTATATCAGAACAAGGGTCAACTGACAATGAATCCTGCACAAATTCAGAGCTGAATTCTCCTCTGGTCAGGAGGACTTTACCTGTGTTACTTCTTTATAGTATCAAAGAATCTGATGAGAAAGCAGGAAAAATCTTTTCACAGATGAACAATATCATGAGTAAAAGTTTGCACGATGACGGTTTTACAGTTCCTCAGATTATTGAAATGGAGCTGGACAACCAGGAGCAGCTGTTGTTACAGGATCCGCCTGTGACTTACATCCAGCAGTTTGCAGATGCAGCCGCCAGCCTCACTTCTCCAGATTCCGAGAAGTGGAACTCTGTGTTCCCCAAGCCTGGGGCTTTGGTGCAGTGCTTGAGGCTACCAAAGTTTGCAGAGGAGGAGACTCTTTGTATAGACTCTATAACTCCTTGTGCTGATGGAATTCATTTGTTGGTAGGACTGCGGACATGCTCTGTGGAATCATTGAGTGCAATAAATCAAGTCGAGGCCTTGAATAATTTAAATAAATTAAACTCTGCACTATGTAATAGACGTAAAGGTGATCTGGAATCCAATCTTGCTGTAGTGAATGGTGCAAATATCAGTGTGATCCAACATGAGTCACCAGCAGATGTGCCGGAGCATCTGCTCATCCGGCCGGAGCAGAGGAATGTCGTCAGTGGTGGATATTTAGTTCTTTACAAGATGAACTATACCACTCGAATAGTGACTTTAGAAGAGGAGCCCGTGAAAATCCAACATATCAAAGATCCCCAGGACACAATTACCTCGCTCATTTTGCTTCCACCAGATATACTGGATAATCGAGAGGATGACTGTGAGGAACCTGCTGAGGAAATGCAGTTAGCCTCAAAGAATGGGATTGAAAGAGAAAAAAAGTCTGACATTTCTACGCTTGGACACCTGGTAGTAACCACTCAGGGAGGATACGTGAAAGTATTAGACCTTTCAAACTTCGAAATTTTGGCCAAAGTGGAGCCTCCCAAAAAGGAGGGCACTGAAGAACAGGATACATTTGTTTCTGTCATTTACTGCTCAGGCACAGACAGGCTGTGTGCGTGCACCAAAGGGCATACATCACAGAAGGAAGCCATGGAAGTAAGCCTTGATATAACAGCTCTCAGCATTCTCCAGCAGCCAGAAAAACTGCAGTGGGAGATTGTGGCTAATGTGCTTGAAGATACTGTTAAGGATCTTGAAGAACTTGGGGCAAACCCCTCCCTAACGAACTCTAAGAGTGAAAAGACAAAGGAAAAGCACCAGGAACAACACAACATTCCCTTCCCCTGTTTATTGGCTGGAGGTTTATTAACATATAAGTCTCCTGCTACCTCACCCATTAGTAGTAATTCTCACAGGTCACTGGATGGTTTAAGCAGAACTCAGGGCGAAAGTATATCAGAACAAGGGTCAACTGACAATGAATCCTGCACAAATTCAGAGCTGAATTCTCCTCTGGTCAGGAGGACTTTACCTGTGTTACTTCTTTATAGTATCAAAGAATCTGATGAGAAAGCAGGAAAAATCTTTTCACAGATGAACAATATCATGAGTAAAAGTTTGCACGATGACGGTTTTACAGTTCCTCAGATTATTGAAATGGAGCTGGACAACCAGGAGCAGCTGTTGTTACAGGATCCGCCTGTGACTTACATCCAGCAGTTTGCAGATGCAGCCGCCAGCCTCACTTCTCCAGATTCCGAGAAGTGGAACTCTGTGTTCCCCAAGCCTGGGGCTTTGGTGCAGTGCTTGAGGCTACCAAAGTTTGCAGAGGAGGAGACTCTTTGTATAGACTCTATAACTCCTTGTGCTGATGGAATTCATTTGTTGGTAGGACTGCGGACATGCTCTGTGGAATCATTGAGTGCAATAAATCAAGTCGAGGCCTTGAATAATTTAAATAAATTAAACTCTGCACTATGTAATAGACGTAAAGGTGATCTGGAATCCAATCTTGCTGTAGTGAATGGTGCAAATATCAGTGTGATCCAACATGAGTCACCAGCAGATGTGCCGGAGCATCTGCTCATCCGGCCGGAGCAGAGGAATGTCGTCAGTGGTGGATATTTAGTTCTTTACAAGATGAACTATACCACTCGAATAGTGACTTTAGAAGAGGAGCCCGTGAAAATCCAACATATCAAAGATCCCCAGGACACAATTACCTCGCTCATTTTGCTTCCACCAGATATACTGGATAATCGAGAGGATGACTGTGAGGAACCTGCTGAGGAAATGCAGTTAGCCTCAAAGAATGGGATTGAAAGAGAAAAAAAGTCTGACATTTCTACGCTTGGACACCTGGTAGTAACCACTCAGGGAGGATACGTGAAAGTATTAGACCTTTCAAACTTCGAAATTTTGGCCAAAGTGGAGCCTCCCAAAAAGGAGGGCACTGAAGAACAGGATACATTTGTTTCTGTCATTTACTGCTCAGGCACAGACAGGCTGTGTGCGTGCACCAAA
Peptide sequence:
MEVSLDITALSILQQPEKLQWEIVANVLEDTVKDLEELGANPSLTNSKSEKTKEKHQEQHNIPFPCLLAGGLLTYKSPATSPISSNSHRSLDGLSRTQGESISEQGSTDNESCTNSELNSPLVRRTLPVLLLYSIKESDEKAGKIFSQMNNIMSKSLHDDGFTVPQIIEMELDNQEQLLLQDPPVTYIQQFADAAASLTSPDSEKWNSVFPKPGALVQCLRLPKFAEEETLCIDSITPCADGIHLLVGLRTCSVESLSAINQVEALNNLNKLNSALCNRRKGDLESNLAVVNGANISVIQHESPADVPEHLLIRPEQRNVVSGGYLVLYKMNYTTRIVTLEEEPVKIQHIKDPQDTITSLILLPPDILDNREDDCEEPAEEMQLASKNGIEREKKSDISTLGHLVVTTQGGYVKVLDLSNFEILAKVEPPKKEGTEEQDTFVSVIYCSGTDRLCACTKGHTSQKEAMEVSLDITALSILQQPEKLQWEIVANVLEDTVKDLEELGANPSLTNSKSEKTKEKHQEQHNIPFPCLLAGGLLTYKSPATSPISSNSHRSLDGLSRTQGESISEQGSTDNESCTNSELNSPLVRRTLPVLLLYSIKESDEKAGKIFSQMNNIMSKSLHDDGFTVPQIIEMELDNQEQLLLQDPPVTYIQQFADAAASLTSPDSEKWNSVFPKPGALVQCLRLPKFAEEETLCIDSITPCADGIHLLVGLRTCSVESLSAINQVEALNNLNKLNSALCNRRKGDLESNLAVVNGANISVIQHESPADVPEHLLIRPEQRNVVSGGYLVLYKMNYTTRIVTLEEEPVKIQHIKDPQDTITSLILLPPDILDNREDDCEEPAEEMQLASKNGIEREKKSDISTLGHLVVTTQGGYVKVLDLSNFEILAKVEPPKKEGTEEQDTFVSVIYCSGTDRLCACTK
IRESfinder result
IRESfinder score
0.708240634
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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