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mmu_circBirc6_1335
Basic information of circular RNA
PanCircBase ID:
mmu_circBirc6_1335
mm39_Chr. Position ID:
chr17|74936399|74947337|+
Gene name:
Birc6
Transcript:
ENSMUST00000180037.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
39,40,41,42,43,44,45
Exon/intron offsets:
0,1555,2206,5391,6358,8938,10375
Genomic length:
10938
Exon/intron sizes in nt:
11,71,55,12,71,11,13,40,00,000
Flanking exon/introns:
chr17:74934110-74936399|chr17:74947337-74948627
Splice length:
1335
Other database IDs:
circAtlas: mmu-Birc6_0070
Human Ortholog IDs:
Mature spliced Sequence:
CTTTAGATGCTCGTCTAGAAGTTGGTCTTGAACAGCAAGCAGAACTTATGTTGAAAATGATGTCTACTCTGGAAGCAGACTCCATCTTACAAGCATTAACAAATACATCTCCTACCTTTTCACAATCTCCAACTGGAACAGATGACTCACTTCTGGGGAATTTACAGCCAGCAAACCAGAACAGCCAGCTCATGATACAGCTCTCATCTGTCCCAATGTTAAATGTTTGTTTCAATAAACTCTTCTCCATGCTTCAAGTCCATCATGTTCAGTTGGAGTCACTTCTTCAGTTGTGGCTCACATTGAGCCTTAATTCTAGTTCATCAGGGAACAAAGAGAATGGAGCAGATATTTTTTTATATAATGCTAATCGGATACCTGTCATCTCATTAAATCAAGCATCAATAGCTAGCTTTCTCACAGTGCTAGCTTGGTATCCAAATACTTTGCTCCGGACGTGGTGCCTTGTGCTTCATAGCTTAACACTCATGACGAATATGCAGCTTAATTCTGGTTCCAGCAGTTCTATTGGAATTCAGGAGACTACGGCTCATCTGTTGGTTTCAGATCCAAACCTTATTCATGTGTTAGTGAAATTTCTTTCTGGTACCAGTCCTCATGGGACGAATCAGCATAGCCCACAGGTTGGTCCAACAGCTACACAAGCCATGCAGGAATTTCTCACCCGACTACAAGTGCATTTGTCTTCAACATGTCCCCAGATATTCAGTGAACTTTTGCTCAAGTTAATTCACATACTGTCCACAGAAAGGGGGGCCTTCCAGACAGGGCAAGGACCTCTTGATGCCCAAGTGAAGCTGTTAGAGTTTACTCTGGAGCAGAACTTTGAAGTTGTCTCAGTTAGTACGATTTCTGCTGTGATAGAGTCTGTCACCTTCTTGGTGCATCATTACATCACTTGCTCCGACAAAGTCATGTCTAGAAGTGGGTCAGACAGCTCTGCCGGTGCTCGGGCTTGCTTTGGGGGACTCTTTGCTAACCTCATTCGTCCAGGTGATGCAAAAGCTGTTTGTGGTGAAATGACAAGAGATCAACTCATGTTTGATTTGTTAAAACTTGTTAACATTTTAGTACAGCTGCCTCTTTCAAGCAATAGGGAATACAGCGCAAGAGTGTCCGTGACCACCAATACAACAGATAGTGTTTCAGATGAAGAAAAAGTCTCAGGAGGCAAAGATGTCAATGGAAGCAGTGCCAGCACTCCAGGATCTCCTGCATGTGTTGCTGACTTAGTCTTAGCCAACCAGCAAATTATGAGCCAGATTCTGTCTGCCCTAGGCCTGTGTAATAGCAGTGCCATGGCAATGATAATTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCAACCAGCAAATTATGAGC
59.83
AGATGGAGTCTGCTTCCAGA
57.76
164
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCAACCAGCAAATTATGAGC
59.83
AAGATGGAGTCTGCTTCCAGA
58.46
165
PCR template sequence:
GCATGTGTTGCTGACTTAGTCTTAGCCAACCAGCAAATTATGAGCCAGATTCTGTCTGCCCTAGGCCTGTGTAATAGCAGTGCCATGGCAATGATAATTGCTTTAGATGCTCGTCTAGAAGTTGGTCTTGAACAGCAAGCAGAACTTATGTTGAAAATGATGTCTACTCTGGAAGCAGACTCCATCTTACAAGCATTAAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-137-3p(1), mmu-miR-155-5p(1), mmu-let-7e-5p(1), mmu-miR-495-3p(1), mmu-miR-136-5p(1), mmu-miR-501-3p(1), mmu-miR-183-5p(1), mmu-miR-499-5p(1), mmu-miR-539-5p(1), mmu-miR-1904(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCAATGATAATTGCTTTAGATGCTCG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBIRC6_1335_ORF_1
0.8258
-0.012755487
0.999999723
2622
ORF sequence:
ATGTTGAAAATGATGTCTACTCTGGAAGCAGACTCCATCTTACAAGCATTAACAAATACATCTCCTACCTTTTCACAATCTCCAACTGGAACAGATGACTCACTTCTGGGGAATTTACAGCCAGCAAACCAGAACAGCCAGCTCATGATACAGCTCTCATCTGTCCCAATGTTAAATGTTTGTTTCAATAAACTCTTCTCCATGCTTCAAGTCCATCATGTTCAGTTGGAGTCACTTCTTCAGTTGTGGCTCACATTGAGCCTTAATTCTAGTTCATCAGGGAACAAAGAGAATGGAGCAGATATTTTTTTATATAATGCTAATCGGATACCTGTCATCTCATTAAATCAAGCATCAATAGCTAGCTTTCTCACAGTGCTAGCTTGGTATCCAAATACTTTGCTCCGGACGTGGTGCCTTGTGCTTCATAGCTTAACACTCATGACGAATATGCAGCTTAATTCTGGTTCCAGCAGTTCTATTGGAATTCAGGAGACTACGGCTCATCTGTTGGTTTCAGATCCAAACCTTATTCATGTGTTAGTGAAATTTCTTTCTGGTACCAGTCCTCATGGGACGAATCAGCATAGCCCACAGGTTGGTCCAACAGCTACACAAGCCATGCAGGAATTTCTCACCCGACTACAAGTGCATTTGTCTTCAACATGTCCCCAGATATTCAGTGAACTTTTGCTCAAGTTAATTCACATACTGTCCACAGAAAGGGGGGCCTTCCAGACAGGGCAAGGACCTCTTGATGCCCAAGTGAAGCTGTTAGAGTTTACTCTGGAGCAGAACTTTGAAGTTGTCTCAGTTAGTACGATTTCTGCTGTGATAGAGTCTGTCACCTTCTTGGTGCATCATTACATCACTTGCTCCGACAAAGTCATGTCTAGAAGTGGGTCAGACAGCTCTGCCGGTGCTCGGGCTTGCTTTGGGGGACTCTTTGCTAACCTCATTCGTCCAGGTGATGCAAAAGCTGTTTGTGGTGAAATGACAAGAGATCAACTCATGTTTGATTTGTTAAAACTTGTTAACATTTTAGTACAGCTGCCTCTTTCAAGCAATAGGGAATACAGCGCAAGAGTGTCCGTGACCACCAATACAACAGATAGTGTTTCAGATGAAGAAAAAGTCTCAGGAGGCAAAGATGTCAATGGAAGCAGTGCCAGCACTCCAGGATCTCCTGCATGTGTTGCTGACTTAGTCTTAGCCAACCAGCAAATTATGAGCCAGATTCTGTCTGCCCTAGGCCTGTGTAATAGCAGTGCCATGGCAATGATAATTGCTTTAGATGCTCGTCTAGAAGTTGGTCTTGAACAGCAAGCAGAACTTATGTTGAAAATGATGTCTACTCTGGAAGCAGACTCCATCTTACAAGCATTAACAAATACATCTCCTACCTTTTCACAATCTCCAACTGGAACAGATGACTCACTTCTGGGGAATTTACAGCCAGCAAACCAGAACAGCCAGCTCATGATACAGCTCTCATCTGTCCCAATGTTAAATGTTTGTTTCAATAAACTCTTCTCCATGCTTCAAGTCCATCATGTTCAGTTGGAGTCACTTCTTCAGTTGTGGCTCACATTGAGCCTTAATTCTAGTTCATCAGGGAACAAAGAGAATGGAGCAGATATTTTTTTATATAATGCTAATCGGATACCTGTCATCTCATTAAATCAAGCATCAATAGCTAGCTTTCTCACAGTGCTAGCTTGGTATCCAAATACTTTGCTCCGGACGTGGTGCCTTGTGCTTCATAGCTTAACACTCATGACGAATATGCAGCTTAATTCTGGTTCCAGCAGTTCTATTGGAATTCAGGAGACTACGGCTCATCTGTTGGTTTCAGATCCAAACCTTATTCATGTGTTAGTGAAATTTCTTTCTGGTACCAGTCCTCATGGGACGAATCAGCATAGCCCACAGGTTGGTCCAACAGCTACACAAGCCATGCAGGAATTTCTCACCCGACTACAAGTGCATTTGTCTTCAACATGTCCCCAGATATTCAGTGAACTTTTGCTCAAGTTAATTCACATACTGTCCACAGAAAGGGGGGCCTTCCAGACAGGGCAAGGACCTCTTGATGCCCAAGTGAAGCTGTTAGAGTTTACTCTGGAGCAGAACTTTGAAGTTGTCTCAGTTAGTACGATTTCTGCTGTGATAGAGTCTGTCACCTTCTTGGTGCATCATTACATCACTTGCTCCGACAAAGTCATGTCTAGAAGTGGGTCAGACAGCTCTGCCGGTGCTCGGGCTTGCTTTGGGGGACTCTTTGCTAACCTCATTCGTCCAGGTGATGCAAAAGCTGTTTGTGGTGAAATGACAAGAGATCAACTCATGTTTGATTTGTTAAAACTTGTTAACATTTTAGTACAGCTGCCTCTTTCAAGCAATAGGGAATACAGCGCAAGAGTGTCCGTGACCACCAATACAACAGATAGTGTTTCAGATGAAGAAAAAGTCTCAGGAGGCAAAGATGTCAATGGAAGCAGTGCCAGCACTCCAGGATCTCCTGCATGTGTTGCTGACTTAGTCTTAGCCAACCAGCAAATTATGAGCCAGATTCTGTCTGCCCTAGGCCTGTGTAATAGCAGTGCCATGGCAATGATAATT
Peptide sequence:
MLKMMSTLEADSILQALTNTSPTFSQSPTGTDDSLLGNLQPANQNSQLMIQLSSVPMLNVCFNKLFSMLQVHHVQLESLLQLWLTLSLNSSSSGNKENGADIFLYNANRIPVISLNQASIASFLTVLAWYPNTLLRTWCLVLHSLTLMTNMQLNSGSSSSIGIQETTAHLLVSDPNLIHVLVKFLSGTSPHGTNQHSPQVGPTATQAMQEFLTRLQVHLSSTCPQIFSELLLKLIHILSTERGAFQTGQGPLDAQVKLLEFTLEQNFEVVSVSTISAVIESVTFLVHHYITCSDKVMSRSGSDSSAGARACFGGLFANLIRPGDAKAVCGEMTRDQLMFDLLKLVNILVQLPLSSNREYSARVSVTTNTTDSVSDEEKVSGGKDVNGSSASTPGSPACVADLVLANQQIMSQILSALGLCNSSAMAMIIALDARLEVGLEQQAELMLKMMSTLEADSILQALTNTSPTFSQSPTGTDDSLLGNLQPANQNSQLMIQLSSVPMLNVCFNKLFSMLQVHHVQLESLLQLWLTLSLNSSSSGNKENGADIFLYNANRIPVISLNQASIASFLTVLAWYPNTLLRTWCLVLHSLTLMTNMQLNSGSSSSIGIQETTAHLLVSDPNLIHVLVKFLSGTSPHGTNQHSPQVGPTATQAMQEFLTRLQVHLSSTCPQIFSELLLKLIHILSTERGAFQTGQGPLDAQVKLLEFTLEQNFEVVSVSTISAVIESVTFLVHHYITCSDKVMSRSGSDSSAGARACFGGLFANLIRPGDAKAVCGEMTRDQLMFDLLKLVNILVQLPLSSNREYSARVSVTTNTTDSVSDEEKVSGGKDVNGSSASTPGSPACVADLVLANQQIMSQILSALGLCNSSAMAMII
IRESfinder result
IRESfinder score
0.716043332
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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