top of page
mmu_circBirc6_1116
Basic information of circular RNA
PanCircBase ID:
mmu_circBirc6_1116
mm39_Chr. Position ID:
chr17|74929030|74938109|+
Gene name:
Birc6
Transcript:
ENSMUST00000180037.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
34,35,36,37,38,39,40
Exon/intron offsets:
0,873,1715,3070,4926,7369,8924
Genomic length:
9079
Exon/intron sizes in nt:
21,61,84,15,61,34,15,40,00,000
Flanking exon/introns:
chr17:74926833-74929030|chr17:74938109-74938605
Splice length:
1116
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CATTTTAAGGATTTGATTCGCTTGCGCCGGACAGCAGAATGGTCTCGTTCTAATTTAGACACTGAAGTTACAACAACAAAAGAGAGCCCTGAGATTGAGCCTCTTCCATTTACTCTGGCCCATGACCGTTGTATCTCAGTAGTGCAAAAGCTCGTCCTGTTTCTTCTTTCCATGGATTTCACCTGCCATGCAGACCTCTTACTGTTTGTCTGCAAGGTTCTTGCACGCATTGCAAATGCGACCAGGCCAACTATTCATCTGTGTGAAATTGTGAATGAGCCGCAGTTAGAAAGACTGTTATTGCTTCTGGTTGGAACTGACTTCAACAGAGGAGACATCTCTTGGGGTGGTGCCTGGGCTCAGTATTCTTTAACCTGTATGCTGCAGGACATTCTAGCAGGAGAATTGTTGGCTCCGGTGGCTGCAGAAGCGATGGAAGAATGCACTGTGAGTGAGGATGTTGGTGCAACAGCTGGCGACTCTGATGACTCCCTGCAGCAGTCCCCCGCTCAGCTGCTGGAAACCATAGATGAACCATTGACACATGAGATAGCAGGTACGCCTCCTCTCTCTTCCTTGGAAAAAGATAAGGAAATTGACCTTGAGCTACTTCAAGACCTCATGGAAGTTGACATTGATCCTTTAGATATTGATCTAGAAAAGGATCCTCTTGCAGCCAAAGTTTTTAAGCCTATAAGCAGTACATGGTATGACTACTGGGGTGCTGATTATGGTACCTATAATTATAATCCTTACATTGGAGGCCTGGGGATGCCTGTAGCAAAACCACCATCAAACACAGAGAAGAATGGATCCCAGACTGTCAGTGTTTCGGTGTCTCAGGCTTTAGATGCTCGTCTAGAAGTTGGTCTTGAACAGCAAGCAGAACTTATGTTGAAAATGATGTCTACTCTGGAAGCAGACTCCATCTTACAAGCATTAACAAATACATCTCCTACCTTTTCACAATCTCCAACTGGAACAGATGACTCACTTCTGGGGAATTTACAGCCAGCAAACCAGAACAGCCAGCTCATGATACAGCTCTCATCTGTCCCAATGTTAAATGTTTGTTTCAATAAACTCTTCTCCATGCTTCAAGTCCATCATGTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGAACAGCCAGCTCATGA
60.04
ACGAGACCATTCTGCTGTCC
59.75
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAACCAGAACAGCCAGCTCA
59.82
ACGAGACCATTCTGCTGTCC
59.75
148
PCR template sequence:
AAACCAGAACAGCCAGCTCATGATACAGCTCTCATCTGTCCCAATGTTAAATGTTTGTTTCAATAAACTCTTCTCCATGCTTCAAGTCCATCATGTTCAGCATTTTAAGGATTTGATTCGCTTGCGCCGGACAGCAGAATGGTCTCGTTCTAATTTAGACACTGAAGTTACAACAACAAAAGAGAGCCCTGAGATTGAGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-155-5p(1), mmu-miR-200a-3p(1), mmu-miR-429-3p(1), mmu-let-7e-5p(1), mmu-miR-200c-3p(1), mmu-miR-324-5p(1), mmu-miR-495-3p(1), mmu-miR-212-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-541-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-1904(1), mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCATCATGTTCAGCATTTTAAGGATT
siRNA sets
AAAATGCTGAACATGATGG, TAAAATGCTGAACATGATG, TTAAAATGCTGAACATGAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBIRC6_1116_ORF_1
0.9837
0.099382721
0.999992594
2061
ORF sequence:
ATGGATTTCACCTGCCATGCAGACCTCTTACTGTTTGTCTGCAAGGTTCTTGCACGCATTGCAAATGCGACCAGGCCAACTATTCATCTGTGTGAAATTGTGAATGAGCCGCAGTTAGAAAGACTGTTATTGCTTCTGGTTGGAACTGACTTCAACAGAGGAGACATCTCTTGGGGTGGTGCCTGGGCTCAGTATTCTTTAACCTGTATGCTGCAGGACATTCTAGCAGGAGAATTGTTGGCTCCGGTGGCTGCAGAAGCGATGGAAGAATGCACTGTGAGTGAGGATGTTGGTGCAACAGCTGGCGACTCTGATGACTCCCTGCAGCAGTCCCCCGCTCAGCTGCTGGAAACCATAGATGAACCATTGACACATGAGATAGCAGGTACGCCTCCTCTCTCTTCCTTGGAAAAAGATAAGGAAATTGACCTTGAGCTACTTCAAGACCTCATGGAAGTTGACATTGATCCTTTAGATATTGATCTAGAAAAGGATCCTCTTGCAGCCAAAGTTTTTAAGCCTATAAGCAGTACATGGTATGACTACTGGGGTGCTGATTATGGTACCTATAATTATAATCCTTACATTGGAGGCCTGGGGATGCCTGTAGCAAAACCACCATCAAACACAGAGAAGAATGGATCCCAGACTGTCAGTGTTTCGGTGTCTCAGGCTTTAGATGCTCGTCTAGAAGTTGGTCTTGAACAGCAAGCAGAACTTATGTTGAAAATGATGTCTACTCTGGAAGCAGACTCCATCTTACAAGCATTAACAAATACATCTCCTACCTTTTCACAATCTCCAACTGGAACAGATGACTCACTTCTGGGGAATTTACAGCCAGCAAACCAGAACAGCCAGCTCATGATACAGCTCTCATCTGTCCCAATGTTAAATGTTTGTTTCAATAAACTCTTCTCCATGCTTCAAGTCCATCATGTTCAGCATTTTAAGGATTTGATTCGCTTGCGCCGGACAGCAGAATGGTCTCGTTCTAATTTAGACACTGAAGTTACAACAACAAAAGAGAGCCCTGAGATTGAGCCTCTTCCATTTACTCTGGCCCATGACCGTTGTATCTCAGTAGTGCAAAAGCTCGTCCTGTTTCTTCTTTCCATGGATTTCACCTGCCATGCAGACCTCTTACTGTTTGTCTGCAAGGTTCTTGCACGCATTGCAAATGCGACCAGGCCAACTATTCATCTGTGTGAAATTGTGAATGAGCCGCAGTTAGAAAGACTGTTATTGCTTCTGGTTGGAACTGACTTCAACAGAGGAGACATCTCTTGGGGTGGTGCCTGGGCTCAGTATTCTTTAACCTGTATGCTGCAGGACATTCTAGCAGGAGAATTGTTGGCTCCGGTGGCTGCAGAAGCGATGGAAGAATGCACTGTGAGTGAGGATGTTGGTGCAACAGCTGGCGACTCTGATGACTCCCTGCAGCAGTCCCCCGCTCAGCTGCTGGAAACCATAGATGAACCATTGACACATGAGATAGCAGGTACGCCTCCTCTCTCTTCCTTGGAAAAAGATAAGGAAATTGACCTTGAGCTACTTCAAGACCTCATGGAAGTTGACATTGATCCTTTAGATATTGATCTAGAAAAGGATCCTCTTGCAGCCAAAGTTTTTAAGCCTATAAGCAGTACATGGTATGACTACTGGGGTGCTGATTATGGTACCTATAATTATAATCCTTACATTGGAGGCCTGGGGATGCCTGTAGCAAAACCACCATCAAACACAGAGAAGAATGGATCCCAGACTGTCAGTGTTTCGGTGTCTCAGGCTTTAGATGCTCGTCTAGAAGTTGGTCTTGAACAGCAAGCAGAACTTATGTTGAAAATGATGTCTACTCTGGAAGCAGACTCCATCTTACAAGCATTAACAAATACATCTCCTACCTTTTCACAATCTCCAACTGGAACAGATGACTCACTTCTGGGGAATTTACAGCCAGCAAACCAGAACAGCCAGCTCATGATACAGCTCTCATCTGTCCCAATGTTAAATGTTTGTTTCAATAAACTCTTCTCCATGCTTCAAGTCCATCATGTTCAG
Peptide sequence:
MDFTCHADLLLFVCKVLARIANATRPTIHLCEIVNEPQLERLLLLLVGTDFNRGDISWGGAWAQYSLTCMLQDILAGELLAPVAAEAMEECTVSEDVGATAGDSDDSLQQSPAQLLETIDEPLTHEIAGTPPLSSLEKDKEIDLELLQDLMEVDIDPLDIDLEKDPLAAKVFKPISSTWYDYWGADYGTYNYNPYIGGLGMPVAKPPSNTEKNGSQTVSVSVSQALDARLEVGLEQQAELMLKMMSTLEADSILQALTNTSPTFSQSPTGTDDSLLGNLQPANQNSQLMIQLSSVPMLNVCFNKLFSMLQVHHVQHFKDLIRLRRTAEWSRSNLDTEVTTTKESPEIEPLPFTLAHDRCISVVQKLVLFLLSMDFTCHADLLLFVCKVLARIANATRPTIHLCEIVNEPQLERLLLLLVGTDFNRGDISWGGAWAQYSLTCMLQDILAGELLAPVAAEAMEECTVSEDVGATAGDSDDSLQQSPAQLLETIDEPLTHEIAGTPPLSSLEKDKEIDLELLQDLMEVDIDPLDIDLEKDPLAAKVFKPISSTWYDYWGADYGTYNYNPYIGGLGMPVAKPPSNTEKNGSQTVSVSVSQALDARLEVGLEQQAELMLKMMSTLEADSILQALTNTSPTFSQSPTGTDDSLLGNLQPANQNSQLMIQLSSVPMLNVCFNKLFSMLQVHHVQ
IRESfinder result
IRESfinder score
0.698097519
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page