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mmu_circBcas3_2149
Basic information of circular RNA
PanCircBase ID:
mmu_circBcas3_2149
mm39_Chr. Position ID:
chr11|85286164|85474820|+
Gene name:
Bcas3
Transcript:
ENSMUST00000108061.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
18
Exon/intron indexes:
7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24
Exon/intron offsets:
0,20313,56322,62529,70820,75413,81299,87304,100489,114089,136454,148589,158851,161984,163732,181443,185703,188558
Genomic length:
188656
Exon/intron sizes in nt:
82,73,108,77,77,84,171,94,134,265,151,45,125,166,101,101,197,98
Flanking exon/introns:
chr11:85261989-85286164|chr11:85474820-85692610
Splice length:
2149
Other database IDs:
CIRCpedia: HSA_CIRCpedia_179449
Human Ortholog IDs:
Mature spliced Sequence:
ATCAGCGGGGAAGCCCAGGAGCTCTTCTCTGTACGACATGGTCCAGTCCGAGCAGCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAAAAGTGTGATAACTTTGCTGAGAAAAGACCTCTTCTTGGTGTTTGTAAGAGCATTGGATCTTCAGGCACGACACCACCGTACTGCTGTGTGGATCTGTATTCACTCCGGACTGGGGAAATGGTCAAGTCCATTCAGTTTAAAACACCCATTTATGATCTTCACTGTAACAAGCGGATCCTCGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGCTGTACTTTCACAAAAAAATTTTTTGTCACAAGTTGTTATCCTTGTCCTGGGCCAAACATGAATCCCATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAATAAGCTGATTCGCTGTCACCAGTCCCGTGGAGGAGCCTGTGGAGACAACATTCAGTCTTACACTGCCACTGTCCTTAGTGCTGCTAAAACACTGAAAAGTGGCCTGACGATGGTTGGGAAAGTGGTGACTCAACTGACAGGCACACTGCCCTCAGGGGTGACAGAAGATGACGTTGCCCTACACTGCAACTCAAGACGGAGCCCCTTGGTTCCAGGCATCATCACAGTCATAGACACTGAGACGGTTGGAGAGGGCCAGGTGCTTGTAAGTGAGGACTCGGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTATGCTGTATGGCTTTTAATACTAGTGGAATGCTTTTAGTCACAACAGATACTCTTGGCCATGACTTTCATGTCTTCCAAATCCTGACTCATCCTTGGTCATCATCACAGTGTGCTGTCCATCATCTGTACACACTTCACAGGGGAGAGACCGAGGCCAAAGTTCAGGACATCTGTTTCAGCCATGATTGTCGTTGGGTGGTGGTCAGTACCCTCCGGGGTACGTCCCACGTTTTCCCCATCAATCCTTATGGTGGCCAGCCTTGTGTCCGCACACACATGTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGGCTGGAAGAGATTGAACAAGAGCTGACATCTAAGCAAGGCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCCCGCTGCATGGGAAGCTGACCAGCCAAGACTCTTACAATAACTTTACAAACAACAACCCTGGCAATCCCCGGCTTTCTCCCCTCCCCAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGACACTGGGAACCATCACGAAGCGAACAGGGCCTTATCTCTTTGGAGCGGGGTGTTTTTCCATAAAGGCTCCATGCAAAGTTAAATCACCTCCACAAATTTCTCCAAGCAAATCAATGGGCGGTGAGTTTTGCGTGGCTGCAGTGTTTGGGACTTCCAGGTCGTGGTTTGCAAACAACGCTGGTCTGAAACGGGAAAAAGATCAGTCCAAACAAGTTGTAGTTGAATCTCTTTACATCATCAGCTGCTACGGGACCTTAGTGGAGCACATGATTGAGCCCCGGCCGATCAGTACTGCTCCCAAGATAAGTGACGACACACCACTGGAGATAATGACGTCACCCCGTGCCAGCTGGACACTTGTTAGAACGCCTCAGTGGAATGAACTGCAGCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAGCTCCTGCTGGCCGGCTCTCTTCCCCCTGGAAGTCCTGGCCCCATTACTCGACATGGGTCCTATGACAGCTTAGCCTCTGACCATAGTGGACAGGAAGATGAAGAATGGCTTTCCCAGGTTGAAATTGTGACACACACCGGACCCCACAGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAAACCATCCAAACCTCAGGCCAGACCACGGTCATATCAACTAGTTCTTCTGTGTTACAATCGCACGGACCTAGCGACACACCACAGCCGCTCTTGGACTTTGATACGGATGATCTAGATCTTAACAGCCTCAGGATCCAGCCTGTCCGCTCTGACCCAGTCAGCATGCCAGGGTCATCCCGTGCTGTCTCTGATCGGAGGGGAGTTTCCACAGTGACCGATGCTGCCTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTCAGCATGCCAGGGTCAT
60.08
GCAGGCAAGATTCTAGCTGC
59.34
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTCAGCATGCCAGGGTCATC
61.1
GCAGGCAAGATTCTAGCTGC
59.34
144
PCR template sequence:
AGGATCCAGCCTGTCCGCTCTGACCCAGTCAGCATGCCAGGGTCATCCCGTGCTGTCTCTGATCGGAGGGGAGTTTCCACAGTGACCGATGCTGCCTCAGATCAGCGGGGAAGCCCAGGAGCTCTTCTCTGTACGACATGGTCCAGTCCGAGCAGCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAAAAGTGTGATA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
32
Interacting miRNAs (#binding sites)
mmu-miR-34c-5p(2), mmu-miR-34a-5p(2), mmu-miR-34b-5p(2), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-141-3p(1), mmu-miR-7b-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-103-3p(1), mmu-let-7b-5p(1), mmu-miR-31-5p(1), mmu-miR-122-5p(1), mmu-miR-335-5p(1), mmu-miR-328-3p(1), mmu-miR-320-3p(1), mmu-miR-138-5p(1), mmu-miR-351-5p(1), mmu-miR-125a-5p(1), mmu-miR-676-3p(1), mmu-miR-107-3p(1), mmu-miR-499-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-5101(1), mmu-miR-3087-3p(1), mmu-miR-540-3p(1), mmu-miR-490-3p(1), mmu-miR-3061-5p(1), mmu-miR-544-5p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GATGCTGCCTCAGATCAGCGGGGAAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBCAS3_2149_ORF_1
0.8876
0.152249361
0.999996336
2160
ORF sequence:
ATGCTGCCTCAGATCAGCGGGGAAGCCCAGGAGCTCTTCTCTGTACGACATGGTCCAGTCCGAGCAGCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAAAAGTGTGATAACTTTGCTGAGAAAAGACCTCTTCTTGGTGTTTGTAAGAGCATTGGATCTTCAGGCACGACACCACCGTACTGCTGTGTGGATCTGTATTCACTCCGGACTGGGGAAATGGTCAAGTCCATTCAGTTTAAAACACCCATTTATGATCTTCACTGTAACAAGCGGATCCTCGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGCTGTACTTTCACAAAAAAATTTTTTGTCACAAGTTGTTATCCTTGTCCTGGGCCAAACATGAATCCCATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAATAAGCTGATTCGCTGTCACCAGTCCCGTGGAGGAGCCTGTGGAGACAACATTCAGTCTTACACTGCCACTGTCCTTAGTGCTGCTAAAACACTGAAAAGTGGCCTGACGATGGTTGGGAAAGTGGTGACTCAACTGACAGGCACACTGCCCTCAGGGGTGACAGAAGATGACGTTGCCCTACACTGCAACTCAAGACGGAGCCCCTTGGTTCCAGGCATCATCACAGTCATAGACACTGAGACGGTTGGAGAGGGCCAGGTGCTTGTAAGTGAGGACTCGGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTATGCTGTATGGCTTTTAATACTAGTGGAATGCTTTTAGTCACAACAGATACTCTTGGCCATGACTTTCATGTCTTCCAAATCCTGACTCATCCTTGGTCATCATCACAGTGTGCTGTCCATCATCTGTACACACTTCACAGGGGAGAGACCGAGGCCAAAGTTCAGGACATCTGTTTCAGCCATGATTGTCGTTGGGTGGTGGTCAGTACCCTCCGGGGTACGTCCCACGTTTTCCCCATCAATCCTTATGGTGGCCAGCCTTGTGTCCGCACACACATGTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGGCTGGAAGAGATTGAACAAGAGCTGACATCTAAGCAAGGCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCCCGCTGCATGGGAAGCTGACCAGCCAAGACTCTTACAATAACTTTACAAACAACAACCCTGGCAATCCCCGGCTTTCTCCCCTCCCCAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGACACTGGGAACCATCACGAAGCGAACAGGGCCTTATCTCTTTGGAGCGGGGTGTTTTTCCATAAAGGCTCCATGCAAAGTTAAATCACCTCCACAAATTTCTCCAAGCAAATCAATGGGCGGTGAGTTTTGCGTGGCTGCAGTGTTTGGGACTTCCAGGTCGTGGTTTGCAAACAACGCTGGTCTGAAACGGGAAAAAGATCAGTCCAAACAAGTTGTAGTTGAATCTCTTTACATCATCAGCTGCTACGGGACCTTAGTGGAGCACATGATTGAGCCCCGGCCGATCAGTACTGCTCCCAAGATAAGTGACGACACACCACTGGAGATAATGACGTCACCCCGTGCCAGCTGGACACTTGTTAGAACGCCTCAGTGGAATGAACTGCAGCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAGCTCCTGCTGGCCGGCTCTCTTCCCCCTGGAAGTCCTGGCCCCATTACTCGACATGGGTCCTATGACAGCTTAGCCTCTGACCATAGTGGACAGGAAGATGAAGAATGGCTTTCCCAGGTTGAAATTGTGACACACACCGGACCCCACAGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAAACCATCCAAACCTCAGGCCAGACCACGGTCATATCAACTAGTTCTTCTGTGTTACAATCGCACGGACCTAGCGACACACCACAGCCGCTCTTGGACTTTGATACGGATGATCTAGATCTTAACAGCCTCAGGATCCAGCCTGTCCGCTCTGACCCAGTCAGCATGCCAGGGTCATCCCGTGCTGTCTCTGATCGGAGGGGAGTTTCCACAGTGACCGATGCTGCCTCA
Peptide sequence:
MLPQISGEAQELFSVRHGPVRAARILPAPQLGAQKCDNFAEKRPLLGVCKSIGSSGTTPPYCCVDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVLSAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVALHCNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMSPRVVNRMSRFQKSAGLEEIEQELTSKQGGRCSPVPGLSSSPSGSPLHGKLTSQDSYNNFTNNNPGNPRLSPLPSLMVVTPLAQIKQPMTLGTITKRTGPYLFGAGCFSIKAPCKVKSPPQISPSKSMGGEFCVAAVFGTSRSWFANNAGLKREKDQSKQVVVESLYIISCYGTLVEHMIEPRPISTAPKISDDTPLEIMTSPRASWTLVRTPQWNELQPPFNANHPLLLAAEAVQYYQLLLAGSLPPGSPGPITRHGSYDSLASDHSGQEDEEWLSQVEIVTHTGPHRRLWMGPQFHFKTIQTSGQTTVISTSSSVLQSHGPSDTPQPLLDFDTDDLDLNSLRIQPVRSDPVSMPGSSRAVSDRRGVSTVTDAAS
IRESfinder result
IRESfinder score
0.547325456
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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