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mmu_circBbx_1026
Basic information of circular RNA
PanCircBase ID:
mmu_circBbx_1026
mm39_Chr. Position ID:
chr16|50061216|50140776|-
Gene name:
Bbx
Transcript:
ENSMUST00000089404.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
11,10,9,8,7,6,5,4
Exon/intron offsets:
0,6928,10460,21562,25323,33693,39515,79446
Genomic length:
79560
Exon/intron sizes in nt:
8,17,58,16,81,93,24,31,00,000
Flanking exon/introns:
chr16:50045656-50061216|chr16:50140776-50151391
Splice length:
1026
Other database IDs:
CIRCpedia: MMU_CIRCpedia_21774, circAtlas: mmu-Bbx_0005
circAtlas: hsa-BBX_0066, CIRCpedia: HSA_CIRCpedia_105224
Human Ortholog IDs:
Mature spliced Sequence:
GCACCCTCAGGAAGACCCCAAGCCTCTAGCAGATGATATCATCTCCAGCATGTTATAGATGCAGAGGATTCCCTGGGATATTGAGAAATACCAGAGGCGAATTGTTCCACTGTAGTCACAGTAATGAAAGGCAGTAATAGAAATAAAGACCATTCAACAGAAGGAGAAGGGGACGGAAAACGACCAAAACGGAAGTGTCTTCAGTGGCATCCGTTGCTAGCTAAGAAACTTCTGGACTTTTCAGAGGAGGAGGAGGAAGACGAGGAAGAGGAAGATATTGATAAAGTTCAACTTCTTGAGGCGGATGGCCTAGAGCAAGATGTTGCTGAGACTGAAGATGATGAGTCACCTGAGCAGCGAGCCCGGAGACCAATGAATGCATTTCTTTTATTTTGCAAGCGCCACCGCTCCCTTGTCCGACAGGAACACCCAAGGCTTGATAACCGAGGTGCTACCAAGATACTAGCTGATTGGTGGGCTGTTCTTGATCCTAAGGAAAAGCAGAAATATACAGACATGGCCAAGGAGTATAAAGATGCATTTATGAAAGCAAATCCTGGCTACAGATGGTGCCCTACCACAAACAAGCCTGTGAAATCGCCAACACCCACTGTCAATCCACGGAAGAAACTTTGGGCCTTCCCACCTGACTCTTCAAGAGACTTGCCAACCCCCAAGAAGGCAAAGACAGAAGTTCCTCAGCTCAACTTTGGAATGGCAGATCCTACTCAGATGGGGGGCCTGAGCATGTTGCTGCTAGCTGGAGAGCACGCTCTTGGGACACCAGAGGCATCCTCTGGGACTTGCAGGCCTGATATTTCAGAATCACCTGAGTTGCGTCAGAAGTCACCATTGTTTCAGTTTGCCGAGATATCTTCAAGGACATCGCACCCCGATGCGCCTTCAAAACAGTGTCAAGCGTCAGCCTTGTTTCAGTTTGCAGAGATCTCTTCAAGCACTTCGCAGTTGGGTGGCACTGAGCCTGTGAAACGCTGTGGAAATTCTGCACTCTTTCAACTGGCAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTCAAGCACTTCGCAGTTGG
59.34
CCCAGGGAATCCTCTGCATC
59.89
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTCAAGCACTTCGCAGTTGG
59.34
TCCCAGGGAATCCTCTGCAT
60.33
154
PCR template sequence:
CTTGTTTCAGTTTGCAGAGATCTCTTCAAGCACTTCGCAGTTGGGTGGCACTGAGCCTGTGAAACGCTGTGGAAATTCTGCACTCTTTCAACTGGCAGAGGCACCCTCAGGAAGACCCCAAGCCTCTAGCAGATGATATCATCTCCAGCATGTTATAGATGCAGAGGATTCCCTGGGATATTGAGAAATACCAGAGGCGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-18a-5p(1), mmu-miR-143-3p(1), mmu-miR-139-5p(1), mmu-miR-24-3p(1), mmu-miR-342-5p(1), mmu-miR-484(1), mmu-miR-452-3p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
TCAACTGGCAGAGGCACCCTCAGGAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBBX_1026_ORF_1
1.0969
0.168941635
0.985451966
939
ORF sequence:
ATGAAAGGCAGTAATAGAAATAAAGACCATTCAACAGAAGGAGAAGGGGACGGAAAACGACCAAAACGGAAGTGTCTTCAGTGGCATCCGTTGCTAGCTAAGAAACTTCTGGACTTTTCAGAGGAGGAGGAGGAAGACGAGGAAGAGGAAGATATTGATAAAGTTCAACTTCTTGAGGCGGATGGCCTAGAGCAAGATGTTGCTGAGACTGAAGATGATGAGTCACCTGAGCAGCGAGCCCGGAGACCAATGAATGCATTTCTTTTATTTTGCAAGCGCCACCGCTCCCTTGTCCGACAGGAACACCCAAGGCTTGATAACCGAGGTGCTACCAAGATACTAGCTGATTGGTGGGCTGTTCTTGATCCTAAGGAAAAGCAGAAATATACAGACATGGCCAAGGAGTATAAAGATGCATTTATGAAAGCAAATCCTGGCTACAGATGGTGCCCTACCACAAACAAGCCTGTGAAATCGCCAACACCCACTGTCAATCCACGGAAGAAACTTTGGGCCTTCCCACCTGACTCTTCAAGAGACTTGCCAACCCCCAAGAAGGCAAAGACAGAAGTTCCTCAGCTCAACTTTGGAATGGCAGATCCTACTCAGATGGGGGGCCTGAGCATGTTGCTGCTAGCTGGAGAGCACGCTCTTGGGACACCAGAGGCATCCTCTGGGACTTGCAGGCCTGATATTTCAGAATCACCTGAGTTGCGTCAGAAGTCACCATTGTTTCAGTTTGCCGAGATATCTTCAAGGACATCGCACCCCGATGCGCCTTCAAAACAGTGTCAAGCGTCAGCCTTGTTTCAGTTTGCAGAGATCTCTTCAAGCACTTCGCAGTTGGGTGGCACTGAGCCTGTGAAACGCTGTGGAAATTCTGCACTCTTTCAACTGGCAGAGGCACCCTCAGGAAGACCCCAAGCCTCTAGCAGATGA
Peptide sequence:
MKGSNRNKDHSTEGEGDGKRPKRKCLQWHPLLAKKLLDFSEEEEEDEEEEDIDKVQLLEADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRWCPTTNKPVKSPTPTVNPRKKLWAFPPDSSRDLPTPKKAKTEVPQLNFGMADPTQMGGLSMLLLAGEHALGTPEASSGTCRPDISESPELRQKSPLFQFAEISSRTSHPDAPSKQCQASALFQFAEISSSTSQLGGTEPVKRCGNSALFQLAEAPSGRPQASSR
IRESfinder result
IRESfinder score
0.493334686
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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