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mmu_circBaz2b_2630
Basic information of circular RNA
PanCircBase ID:
mmu_circBaz2b_2630
mm39_Chr. Position ID:
chr2|59762448|59809051|-
Gene name:
Baz2b
Transcript:
ENSMUST00000112550.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
18,17,16,15,14,13,12,11,10,9,8,7,6,5,4
Exon/intron offsets:
0,1566,3110,4581,10657,10833,15982,25525,26327,27716,29916,36522,37113,45254,46438
Genomic length:
46603
Exon/intron sizes in nt:
6,64,56,66,66,29,32,11,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr2:59756504-59762448|chr2:59809051-59831849
Splice length:
2630
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTCGTGCTGGAACGCCCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCACGATTCGTCATTCCATTCGAGGACTTCTGGGAAGAGCAGTCGAAATGGTCCTGAGAAAGGTATAAATGGGTCGGTTAATGGAACCAGTGCAGCATCAGTACTTGGTGTCAATGCATCTGTAGTAGCCACTCCTGCTTCAAGTTCCATGGGACAGAACCAAAGCACAAGCTCAGGTGGAGGAACCCTAAAATGTCATCAGGAACAAAACAAAAGCCAGCCTGTGGACGCCAGAGCCGACAGAATCAAAGATAAGAAACCAAGGAAGAAGGCTATGGAAAGTTCTAGCAACAGTGATAGTGACTCAGGCACATCGTCAGACACCTCGAGTGAAGGCATTAGCAGCAGTGACTCAGACGATCTGGAAGAGGAAGAGGAAGAAGATCAAAGCGTGGAGGAGAGTGAAGATGACGATTCTGACTCAGAGACTGAAGCACAACACAAAAGTAACAACCAGGTGCTATTACATGGTATTTCAGACCCAAAAACAGATGGACAGAAAGCAACTGAAAAAGCCCAGGAAAGAAGAACACACCAGCCATTACCTCCTGTGTCTGAGTCCCAGACGCACCCACCATTCCAGTCCCAGCAGAAGCAGCCTCAGGTTCTCTCACAGCAGCTTCCGTTTATTTTCCAAAGCTCTCAGGCAAAGGAGGAGTCTGTGACCAAACACACCAGTGTAATACAGTCGACGGGACTGGTGTCCAATGTGAAACCTTTGTCTTTGGTAAATCAAGCCAAAAAGGAAACTTACAGGAAACTCGTAGTTCCTTCTCCTGATGTACTTAAAGCAGGGAATAAAAATACCTCTGAAGAGTCTAGTTCTTTGACCAGTGAATTGCGATCCAAACGGGAACAATATAAGCAGACATTCCCATCACAAGGAAAGAAACAGGAGATGGGGAAGAGCCTGAAGAAGGTTATTGCAGCTTTGTCAAATACTAAAGCAACCTCTAGCTCACCAGCACATCCAAAACTACCACTAGATAACAACCACCCTAATCCATTTTTGACAAATGCACTTTTAGGGAATCACCAACCAAATGGAGTCATTCAAAGCGTCATTCAAGAAGCTCCGTTAGCACTAACTACCAAAACGAAAATGCAGAGTAAGATTAACGAAAATGTCTCAAGTAGCACCCCGTTCTCCTCACCTGTCAATCTGAGCACGAGTGGGAGGAGAGCCCCTGGCAGTCAGACTCCAGCGCTGCCCTCTGCCTCGCCCATCCTGCACAGCAGTGGGAAGGAAAAGCGGGTCAGCAATGACGCAACCCCGCTCAAAGCGCACCATCACCCCCATCCGGCGGCAGCGGCCGCGGCCTTGGTGGAACAGTTTAGAGGGACAGATTCAGACGTTCCCAGTAGTAAAGACTCTGAGGACTCAAATGAGGATGAGGAGGAAGATGATGAGGAAGAAGATGAAGAGGATGATGAAGATGATGAGTCTGATGACAGTCAATCAGAATCAGATAGTAATTCACAATCAGATTCAGAAGGCTCAGAAGACGACGAGGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGAGAAACCTGCCGTGAACCTGACCCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCAGTCTCACAGCGCACTCAGCACCTCACCTCCACATAGGAAGCCCCCCAGGCTCTGCTCCTGCTGCCCTGTGCTCTGAGTCCCAGCCTCCTGCTTTTCTTGGCACTTCTTCTTCCACACTCACTTCAACTCCACACTCTGGTACATCCAAACGAAGAAGAGTGGCAGACGATCAGGAGCTGCGCATCCCTCTGGACTATGGCTGGCAGAGGGAGACAAGGGTGAGAAACTTTGGTGGGCGCCTTCCAGGAGAAGTTGCATATTATGCCCCGTGTGGGAAGAAGCTGAGGCAGTGCCCTGACATGGTAAAGGGAATGCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGACGGCCGAAGAGGAAGACCACCCAATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCAGAATTCCTAGATAACACAGATGCAAAATTACTAAGGAAACTGCAGGCTCAAGAAATAGCCAGACAAGCAGCACAAATAAAACTTTTGAGAAAACTTCAGAAGCAGGAACAGGCACGGGTTGCCAAAGAAGCTAAAAAACAGCAAGCGATAATGGCTGCGGAAGAGAAGCGCAAACAGAAAGAACAGATGAAGATTATAAAGCAGCAGGAAAAAATTAAGAGAATACAGCAAATCAGAATGGAGAAAGAACTGAGAGCTCAGCAGATTCTCGAGGCTAAAAAGAAAAAGAAGGAAGAAGCGGCAAATGCCAAATTATTGGAGGCCGAGAAACGAACCAAGGAGAAAGAACTGAGAAGACAGCAGGCTGTCCTTCTGAAACACCAGGAACGGGAGCGAAGGCGGCAGCATGTGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCAGGCTGTCCTTCTGAAA
59.23
ATGGTGGAAAGAAGGGCGTT
59.89
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCAGGCTGTCCTTCTGAAA
59.23
AATGGTGGAAAGAAGGGCGT
59.89
156
PCR template sequence:
GAGAAGACAGCAGGCTGTCCTTCTGAAACACCAGGAACGGGAGCGAAGGCGGCAGCATGTGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAAGTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTCGTGCTGGAACGCCCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
23
Interacting miRNAs (#binding sites)
mmu-miR-1199-5p(3), mmu-miR-211-5p(2), mmu-miR-298-5p(2), mmu-miR-136-5p(2), mmu-miR-370-3p(2), mmu-miR-574-5p(2), mmu-miR-9-5p(1), mmu-miR-93-5p(1), mmu-let-7b-5p(1), mmu-miR-204-5p(1), mmu-miR-709(1), mmu-miR-185-5p(1), mmu-miR-214-3p(1), mmu-miR-541-5p(1), mmu-miR-324-3p(1), mmu-miR-342-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-207(1), mmu-miR-532-5p(1), mmu-miR-484(1), mmu-miR-188-3p(1), mmu-miR-697(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
TAAAAAAGCAGAAGTGCAGAGTGGTG
siRNA sets
CACCACTCTGCACTTCTGC,ACCACTCTGCACTTCTGCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBAZ2B_2630_ORF_1
1.0484
0.212120436
0.99999987
2550
ORF sequence:
ATGGGACAGAACCAAAGCACAAGCTCAGGTGGAGGAACCCTAAAATGTCATCAGGAACAAAACAAAAGCCAGCCTGTGGACGCCAGAGCCGACAGAATCAAAGATAAGAAACCAAGGAAGAAGGCTATGGAAAGTTCTAGCAACAGTGATAGTGACTCAGGCACATCGTCAGACACCTCGAGTGAAGGCATTAGCAGCAGTGACTCAGACGATCTGGAAGAGGAAGAGGAAGAAGATCAAAGCGTGGAGGAGAGTGAAGATGACGATTCTGACTCAGAGACTGAAGCACAACACAAAAGTAACAACCAGGTGCTATTACATGGTATTTCAGACCCAAAAACAGATGGACAGAAAGCAACTGAAAAAGCCCAGGAAAGAAGAACACACCAGCCATTACCTCCTGTGTCTGAGTCCCAGACGCACCCACCATTCCAGTCCCAGCAGAAGCAGCCTCAGGTTCTCTCACAGCAGCTTCCGTTTATTTTCCAAAGCTCTCAGGCAAAGGAGGAGTCTGTGACCAAACACACCAGTGTAATACAGTCGACGGGACTGGTGTCCAATGTGAAACCTTTGTCTTTGGTAAATCAAGCCAAAAAGGAAACTTACAGGAAACTCGTAGTTCCTTCTCCTGATGTACTTAAAGCAGGGAATAAAAATACCTCTGAAGAGTCTAGTTCTTTGACCAGTGAATTGCGATCCAAACGGGAACAATATAAGCAGACATTCCCATCACAAGGAAAGAAACAGGAGATGGGGAAGAGCCTGAAGAAGGTTATTGCAGCTTTGTCAAATACTAAAGCAACCTCTAGCTCACCAGCACATCCAAAACTACCACTAGATAACAACCACCCTAATCCATTTTTGACAAATGCACTTTTAGGGAATCACCAACCAAATGGAGTCATTCAAAGCGTCATTCAAGAAGCTCCGTTAGCACTAACTACCAAAACGAAAATGCAGAGTAAGATTAACGAAAATGTCTCAAGTAGCACCCCGTTCTCCTCACCTGTCAATCTGAGCACGAGTGGGAGGAGAGCCCCTGGCAGTCAGACTCCAGCGCTGCCCTCTGCCTCGCCCATCCTGCACAGCAGTGGGAAGGAAAAGCGGGTCAGCAATGACGCAACCCCGCTCAAAGCGCACCATCACCCCCATCCGGCGGCAGCGGCCGCGGCCTTGGTGGAACAGTTTAGAGGGACAGATTCAGACGTTCCCAGTAGTAAAGACTCTGAGGACTCAAATGAGGATGAGGAGGAAGATGATGAGGAAGAAGATGAAGAGGATGATGAAGATGATGAGTCTGATGACAGTCAATCAGAATCAGATAGTAATTCACAATCAGATTCAGAAGGCTCAGAAGACGACGAGGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGAGAAACCTGCCGTGAACCTGACCCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCAGTCTCACAGCGCACTCAGCACCTCACCTCCACATAGGAAGCCCCCCAGGCTCTGCTCCTGCTGCCCTGTGCTCTGAGTCCCAGCCTCCTGCTTTTCTTGGCACTTCTTCTTCCACACTCACTTCAACTCCACACTCTGGTACATCCAAACGAAGAAGAGTGGCAGACGATCAGGAGCTGCGCATCCCTCTGGACTATGGCTGGCAGAGGGAGACAAGGGTGAGAAACTTTGGTGGGCGCCTTCCAGGAGAAGTTGCATATTATGCCCCGTGTGGGAAGAAGCTGAGGCAGTGCCCTGACATGGTAAAGGGAATGCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGACGGCCGAAGAGGAAGACCACCCAATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCAGAATTCCTAGATAACACAGATGCAAAATTACTAAGGAAACTGCAGGCTCAAGAAATAGCCAGACAAGCAGCACAAATAAAACTTTTGAGAAAACTTCAGAAGCAGGAACAGGCACGGGTTGCCAAAGAAGCTAAAAAACAGCAAGCGATAATGGCTGCGGAAGAGAAGCGCAAACAGAAAGAACAGATGAAGATTATAAAGCAGCAGGAAAAAATTAAGAGAATACAGCAAATCAGAATGGAGAAAGAACTGAGAGCTCAGCAGATTCTCGAGGCTAAAAAGAAAAAGAAGGAAGAAGCGGCAAATGCCAAATTATTGGAGGCCGAGAAACGAACCAAGGAGAAAGAACTGAGAAGACAGCAGGCTGTCCTTCTGAAACACCAGGAACGGGAGCGAAGGCGGCAGCATGTGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAAGTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTCGTGCTGGAACGCCCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCACGATTCGTCATTCCATTCGAGGACTTCTGGGAAGAGCAGTCGAAATGGTCCTGAGAAAGGTATAA
Peptide sequence:
MGQNQSTSSGGGTLKCHQEQNKSQPVDARADRIKDKKPRKKAMESSSNSDSDSGTSSDTSSEGISSSDSDDLEEEEEEDQSVEESEDDDSDSETEAQHKSNNQVLLHGISDPKTDGQKATEKAQERRTHQPLPPVSESQTHPPFQSQQKQPQVLSQQLPFIFQSSQAKEESVTKHTSVIQSTGLVSNVKPLSLVNQAKKETYRKLVVPSPDVLKAGNKNTSEESSSLTSELRSKREQYKQTFPSQGKKQEMGKSLKKVIAALSNTKATSSSPAHPKLPLDNNHPNPFLTNALLGNHQPNGVIQSVIQEAPLALTTKTKMQSKINENVSSSTPFSSPVNLSTSGRRAPGSQTPALPSASPILHSSGKEKRVSNDATPLKAHHHPHPAAAAAALVEQFRGTDSDVPSSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQSESDSNSQSDSEGSEDDEEKDQEESDSDTEGEKPAVNLTQTSSSAKSPPSSLTAHSAPHLHIGSPPGSAPAALCSESQPPAFLGTSSSTLTSTPHSGTSKRRRVADDQELRIPLDYGWQRETRVRNFGGRLPGEVAYYAPCGKKLRQCPDMVKGMQWCLLKEEDVIPRIRAMDGRRGRPPNPDRPRAREESRMKRRKGRPPNVGSAEFLDNTDAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQKEQMKIIKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRTKEKELRRQQAVLLKHQERERRRQHVMLMKAMEARKKAEVQSGGEPQMATLVLERPSFHHYWEFHHCLLLQPRITIRHSIRGLLGRAVEMVLRKV
IRESfinder result
IRESfinder score
0.418400849
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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