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mmu_circBaz2b_240
Basic information of circular RNA
PanCircBase ID:
mmu_circBaz2b_240
mm39_Chr. Position ID:
chr2|59831849|59907255|-
Gene name:
Baz2b
Transcript:
ENSMUST00000137480.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
4,3,2
Exon/intron offsets:
0,4537,75364
Genomic length:
75406
Exon/intron sizes in nt:
51,147,42
Flanking exon/introns:
chr2:59814314-59831849|chr2:59907255-59955806
Splice length:
240
Other database IDs:
circAtlas: mmu-Baz2b_0056
Human Ortholog IDs:
Mature spliced Sequence:
GTTTCCCAACAGTGATGTCACAAGATTGACCACACTGACACAATATGGAGTCTGGAGAACTGTTGCCATCCTCACCAGCCTCCTCCACTACACCAACATCATCTTCTGCTCCTTCCGTGGCTTCAGCAGTTTCAAAGAGCAGCCTTTCCACAGGAGCTGCTTCACTTAGTTCTACAGCCAGCCCATGTGTACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTTCTACAGCCAGCCCATGT
60.04
GTTGGTGTAGTGGAGGAGGC
60.04
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTCTACAGCCAGCCCATGTG
60.04
GTTGGTGTAGTGGAGGAGGC
60.04
168
PCR template sequence:
AGCCTTTCCACAGGAGCTGCTTCACTTAGTTCTACAGCCAGCCCATGTGTACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTGGTTTCCCAACAGTGATGTCACAAGATTGACCACACTGACACAATATGGAGTCTGGAGAACTGTTGCCATCCTCACCAGCCTCCTCCACTACACCAACATC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GACTCAGTGTCTGGTTTCCCAACAGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBAZ2B_240_ORF_1
1.0662
-0.000327712
0.161211756
225
ORF sequence:
ATGGAGTCTGGAGAACTGTTGCCATCCTCACCAGCCTCCTCCACTACACCAACATCATCTTCTGCTCCTTCCGTGGCTTCAGCAGTTTCAAAGAGCAGCCTTTCCACAGGAGCTGCTTCACTTAGTTCTACAGCCAGCCCATGTGTACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTGGTTTCCCAACAGTGATGTCACAAGATTGA
Peptide sequence:
MESGELLPSSPASSTTPTSSSAPSVASAVSKSSLSTGAASLSSTASPCVLEAGKSKIKVSPDSVSGFPTVMSQD
IRESfinder result
IRESfinder score
0.800524809
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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