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mmu_circBaz2a_864
Basic information of circular RNA
PanCircBase ID:
mmu_circBaz2a_864
mm39_Chr. Position ID:
chr10|127952415|127955747|+
Gene name:
Baz2a
Transcript:
ENSMUST00000238829.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
10,11,12,13,14
Exon/intron offsets:
0,2008,2408,2723,3077
Genomic length:
3332
Exon/intron sizes in nt:
2,11,10,16,62,31,255
Flanking exon/introns:
chr10:127952276-127952415|chr10:127955747-127956979
Splice length:
864
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GGCTTGCAGTGGGTCCAGTTATCAGCAGAGGAGATTCCTTCCAGAATTCAAGCAATCACTGGCAAACGAGGCCGACCTCGAAACAATGAGAAGGCTAAGAACAAGGAAGTTCCCAAAGTGAAGCGGGGCCGAGGTCGGCCTCCTAAGATCAAAATGCCTGAGCTGTTGAATAAAACAGATAACCGACTTCCAAAGAAACTGGAAACCCAAGAAATACTGAGTGAGGACGATAAAGCAAAGATGACTAAAAACAAAAAGAAGATGAGGCAGAAGGTCCAACGGGGAGAAAGTCAGACTCCTGTCCAAGGGCAGGCCAGAAACAAGAGGAAGCAAGACACCAAGAGCTTGAAGCAGAAGGACACTAAGAAGAAATTGAAGGCTGAGAAAGAGAAGATGAAGACAAAGCAGGAAAAGCTGAAGGAAAAGGTAAAGCGAGAAAAGAAAGAAAAGGTAAAAGCGAAGGGGAAGGAAGGGCCCAGAGCCAGGCCATCCTGTAGAGCAGACAAGACCCTTGCCACACAGAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGAGGAGATGAAGAAGCCCACAGAGGATATGTGTCTGTCTGACCACCAGCCCCTGCCTGACTTCACACGCATCCCTGGTTTGACACTGTCCAGTAGGGCTTTCTCAGATTGCTTGACCATCGTGGAGTTCCTTCACAGTTTTGGCAAAGTGCTAGGCTTTGACCTTACCAAAGATGTTCCTAGTCTAGGAGTCCTGCAGGAGGGACTCTTATGTCAAGGTGACAGCTTGGACAAAGTGCAGGACCTGCTGGTGCGACTGCTGAAGGCTGCACTCCATGATCCTGGTCTGCCCCCCTACTGTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGACAAAGTGCAGGACCTG
60.18
CCTCGTTTGCCAGTGATTGC
60.11
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGACAAAGTGCAGGACCTG
60.18
GCCTCGTTTGCCAGTGATTG
60.11
149
PCR template sequence:
ACTCTTATGTCAAGGTGACAGCTTGGACAAAGTGCAGGACCTGCTGGTGCGACTGCTGAAGGCTGCACTCCATGATCCTGGTCTGCCCCCCTACTGTCAGGGCTTGCAGTGGGTCCAGTTATCAGCAGAGGAGATTCCTTCCAGAATTCAAGCAATCACTGGCAAACGAGGCCGACCTCGAAACAATGAGAAGGCTAAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-26a-5p(1), mmu-miR-326-3p(1), mmu-miR-138-5p(1), mmu-miR-149-5p(1), mmu-miR-5101(1)
siRNAs for circular RNA silencing
Junction sequence
CCCCTACTGTCAGGGCTTGCAGTGGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBAZ2A_864_ORF_1
1.1121
0.345636759
0.999929758
1575
ORF sequence:
ATGCCTGAGCTGTTGAATAAAACAGATAACCGACTTCCAAAGAAACTGGAAACCCAAGAAATACTGAGTGAGGACGATAAAGCAAAGATGACTAAAAACAAAAAGAAGATGAGGCAGAAGGTCCAACGGGGAGAAAGTCAGACTCCTGTCCAAGGGCAGGCCAGAAACAAGAGGAAGCAAGACACCAAGAGCTTGAAGCAGAAGGACACTAAGAAGAAATTGAAGGCTGAGAAAGAGAAGATGAAGACAAAGCAGGAAAAGCTGAAGGAAAAGGTAAAGCGAGAAAAGAAAGAAAAGGTAAAAGCGAAGGGGAAGGAAGGGCCCAGAGCCAGGCCATCCTGTAGAGCAGACAAGACCCTTGCCACACAGAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGAGGAGATGAAGAAGCCCACAGAGGATATGTGTCTGTCTGACCACCAGCCCCTGCCTGACTTCACACGCATCCCTGGTTTGACACTGTCCAGTAGGGCTTTCTCAGATTGCTTGACCATCGTGGAGTTCCTTCACAGTTTTGGCAAAGTGCTAGGCTTTGACCTTACCAAAGATGTTCCTAGTCTAGGAGTCCTGCAGGAGGGACTCTTATGTCAAGGTGACAGCTTGGACAAAGTGCAGGACCTGCTGGTGCGACTGCTGAAGGCTGCACTCCATGATCCTGGTCTGCCCCCCTACTGTCAGGGCTTGCAGTGGGTCCAGTTATCAGCAGAGGAGATTCCTTCCAGAATTCAAGCAATCACTGGCAAACGAGGCCGACCTCGAAACAATGAGAAGGCTAAGAACAAGGAAGTTCCCAAAGTGAAGCGGGGCCGAGGTCGGCCTCCTAAGATCAAAATGCCTGAGCTGTTGAATAAAACAGATAACCGACTTCCAAAGAAACTGGAAACCCAAGAAATACTGAGTGAGGACGATAAAGCAAAGATGACTAAAAACAAAAAGAAGATGAGGCAGAAGGTCCAACGGGGAGAAAGTCAGACTCCTGTCCAAGGGCAGGCCAGAAACAAGAGGAAGCAAGACACCAAGAGCTTGAAGCAGAAGGACACTAAGAAGAAATTGAAGGCTGAGAAAGAGAAGATGAAGACAAAGCAGGAAAAGCTGAAGGAAAAGGTAAAGCGAGAAAAGAAAGAAAAGGTAAAAGCGAAGGGGAAGGAAGGGCCCAGAGCCAGGCCATCCTGTAGAGCAGACAAGACCCTTGCCACACAGAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGAGGAGATGAAGAAGCCCACAGAGGATATGTGTCTGTCTGACCACCAGCCCCTGCCTGACTTCACACGCATCCCTGGTTTGACACTGTCCAGTAGGGCTTTCTCAGATTGCTTGACCATCGTGGAGTTCCTTCACAGTTTTGGCAAAGTGCTAGGCTTTGACCTTACCAAAGATGTTCCTAGTCTAGGAGTCCTGCAGGAGGGACTCTTATGTCAAGGTGACAGCTTGGACAAAGTGCAGGACCTGCTGGTGCGACTGCTGAAGGCTGCACTCCATGATCCTGGTCTGCCCCCCTACTGTCAG
Peptide sequence:
MPELLNKTDNRLPKKLETQEILSEDDKAKMTKNKKKMRQKVQRGESQTPVQGQARNKRKQDTKSLKQKDTKKKLKAEKEKMKTKQEKLKEKVKREKKEKVKAKGKEGPRARPSCRADKTLATQKRLEEQQRQQAILEEMKKPTEDMCLSDHQPLPDFTRIPGLTLSSRAFSDCLTIVEFLHSFGKVLGFDLTKDVPSLGVLQEGLLCQGDSLDKVQDLLVRLLKAALHDPGLPPYCQGLQWVQLSAEEIPSRIQAITGKRGRPRNNEKAKNKEVPKVKRGRGRPPKIKMPELLNKTDNRLPKKLETQEILSEDDKAKMTKNKKKMRQKVQRGESQTPVQGQARNKRKQDTKSLKQKDTKKKLKAEKEKMKTKQEKLKEKVKREKKEKVKAKGKEGPRARPSCRADKTLATQKRLEEQQRQQAILEEMKKPTEDMCLSDHQPLPDFTRIPGLTLSSRAFSDCLTIVEFLHSFGKVLGFDLTKDVPSLGVLQEGLLCQGDSLDKVQDLLVRLLKAALHDPGLPPYCQ
IRESfinder result
IRESfinder score
0.390068267
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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