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mmu_circBaz1b_380
Basic information of circular RNA
PanCircBase ID:
mmu_circBaz1b_380
mm39_Chr. Position ID:
chr5|135255363|135259188|+
Gene name:
Baz1b
Transcript:
ENSMUST00000002825.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
10,11,12
Exon/intron offsets:
0,2017,3647
Genomic length:
3825
Exon/intron sizes in nt:
1,03,99,178
Flanking exon/introns:
chr5:135252072-135255363|chr5:135259188-135260453
Splice length:
380
Other database IDs:
circBase: hsa_circ_0134608, circAtlas: hsa-BAZ1B_0030, CIRCpedia: HSA_CIRCpedia_58718
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAAAGCAAACCTAGGCAAGAATGCAAGTGTGAATGCGCACCATGGACCAGCACTAGAAGCTGTGGAGACCACTGTGCCCAAGCAAGGACAAAACTTATGGTTCCTGTGTGACAGTCAGAAGGAATTGGATGAGCTGCTGAGTTGCCTCCATCCTCAGGGAATCAGGGAAAGTCAGCTTAAAGAGAGGCTGGAGAAGAGATACCAAGAAATTACTCATTCTATTTATCTGGCTCGGAAGCCAAATTTGGGTCTAAAATCTTGTGACGGCAACCAGGAGCTCTTAAACTTCCTGAGGAGTGATCTTATTGAAGTGGCAACGAGGCTGCAGAAAGGAGGACTTGGCTACATGGAGGGAACATCTGAGTTTGAGGCCCGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGAAAGGAGGACTTGGCT
59.96
AGTTTTGTCCTTGCTTGGGC
59.25
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCTGCAGAAAGGAGGACTT
59.96
AGTTTTGTCCTTGCTTGGGC
59.25
155
PCR template sequence:
GCTCTTAAACTTCCTGAGGAGTGATCTTATTGAAGTGGCAACGAGGCTGCAGAAAGGAGGACTTGGCTACATGGAGGGAACATCTGAGTTTGAGGCCCGGGTAAGAAAGCAAACCTAGGCAAGAATGCAAGTGTGAATGCGCACCATGGACCAGCACTAGAAGCTGTGGAGACCACTGTGCCCAAGCAAGGACAAAACTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-351-5p(1), mmu-miR-377-3p(1), mmu-miR-207(1), mmu-miR-673-5p(1), mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GTTTGAGGCCCGGGTAAGAAAGCAAA
siRNA sets
TTTCTTACCCGGGCCTCAA, CTTTCTTACCCGGGCCTCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.475970063
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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