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mmu_circBaz1b_2541
Basic information of circular RNA
PanCircBase ID:
mmu_circBaz1b_2541
mm39_Chr. Position ID:
chr5|135245443|135260636|+
Gene name:
Baz1b
Transcript:
ENSMUST00000002825.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
7,8,9,10,11,12,13
Exon/intron offsets:
0,5368,6495,9920,11937,13567,15010
Genomic length:
15193
Exon/intron sizes in nt:
1705,139,134,103,99,178,183
Flanking exon/introns:
chr5:135239792-135245443|chr5:135260636-135265128
Splice length:
2541
Other database IDs:
circBase: mmu_circ_0012201, CIRCpedia: MMU_CIRCpedia_8233, circAtlas: mmu-Baz1b_0008
circBase: hsa_circ_0080482, circAtlas: hsa-BAZ1B_0021, CIRCpedia: HSA_CIRCpedia_157089
Human Ortholog IDs:
Mature spliced Sequence:
TATATGACTCTCAATCCCTCTACCAAGAGGAGGAATACTGGATCTCCAGACAGGAAGCCCTCAAAGAAACCTAAGAGAGACAGTTCTTCTCTGAGTTCCCCACTAAACCCTAAGCTGTGGTGTCATGTGCACTTGGAGAAGTCGTTAAATGGCCCACCACTCAAAGTAAAGAACTCAAAGAATTCCAAGTCTCCGGAAGAACATTTGGAAGGGGTGATGAAAATTATGTCCCCCAACAACAACAAGCTACACAGCTTCCACATTCCTAAGAAAGGCCCAGCCGCCAAGAAGCCAGGGAAGCACAGTGACAAACCTCTGAAGGCCAAGGGCAGAGGCAAAGGCATCCTGAATGGACAGAAGTCCACAGGCAACTCCAAATCACCCAGCAAGTGTGTGAAGACTCCTAAGACCAAAATGAAGCAGATGACTTTGTTGGATATGGCCAAAGGGACTCAGAAGATGACCCGCACCCCACGGAGTTCTGGGGGTGTGCCAAGGTCTTCTGGTAAACCTCACAAACACCTGCCTCCTGCAGCTCTGCATCTGATTGCCTATTACAAAGAAAATAAAGACAAAGAGGACAAGAAGAGTGCTCTGTCCTGTGTTATCTCCAAAACAGCACGTCTCCTCTCCAATGAAGATAGAGCCCGTCTTCCAGAAGAGCTCCGGGCTCTTGTCCAGAAACGCTATGAGCTCCTGGAACATAAAAAGAGGTGGGCCTCTATGTCTGAAGAGCAACGGAAAGAATATTTGAAAAAGAAACGACAGGAGCTAAAGGAGAGGTTGCGGGAAAAAGCCAAAGAACGGAGAGAGAGAGAAATGCTGGAGAGGTTAGAAAAGCAGAAGCGATTTGAGGACCAGGAGTTAGGTGGCAGAAACCTCCCAGCATTCAGGCTGGTAGATACCCCTGAGGGGCTCCCCAACACTCTTTTTGGGGATGTGGCCCTGGTGGTGGAGTTCCTGAGCTGTTACTCTGGGTTGCTCTTGCCCGATGCTCAGTACCCTATCACTGCTGTGTCCCTAATGGAAGCCTTGAGTGCAGATAAAGGTGGTTTTTTGTACTTGAACAGAGTGCTGGTCATCCTGCTACAGACCTTACTTCAGGATGAAATTGCAGAAGACTATGGAGAACTGGGAATGAAGCTGTCAGAAATCCCCCTCACCCTGCATTCTGTCTCAGAGCTGGTCCGGCTCTGCTTGCGCAGGTGTGATGTCCAGGAGGACAGCGAGGGCTCAGAAACAGATGACAATAAAGATTCCACACCATTTGAGGATAATGAGGTGCAAGACGAATTTCTAGAGAAGCTGGAGACATCAGAATTCTTTGAGCTGACCTCAGAGGAGAAGCTACGGATATTGACAGCTCTTTGCCACCGTATCCTCATGACATACTCTGTGCAAGACCACATGGAGACAAGACAGCAGGTGTCTGCAGAGTTGTGGAAGGAGCGGCTTGCTGTGCTGAAGGAGGAGAATGATAAGAAGAGAGCAGAGAAGCAAAAGCGGAAGGAGATGGAAGCCAGAAATAAAGAAAATGGCAAAGAGGAGAATGTGCTAGGCAAAGTGGACAGGAAAAAAGAAATTGTGAAGATTGAACAGCAAGTAGAAGTGGAAGCAGATGACATGATCAGTGCTGTCAAGAGCAGAAGGCTGCTTAGCATGCAAGCTAAGAGGAAGCGGGAAATCCAGGAGAGAGAAACAAAAGTGAGATTGGAACGGGAAGCTGAAGAGGAACGAATGCGGAAACACAAGGCTGCTGCCGAGAAGGCTTTCCAGGAAGGGATTGCCAAGGCAAAACTTGTACTGCGCAGGACACCTATTGGTACAGACCGCAACCATAACAGATACTGGCTCTTCTCAAACGAAGTCCCAGGATTATTCATTGAAAAGGGCTGGGTCCATAATAGCATTGACTACCGGTTTAAGCATCACCGCAAAGACCACAGCAATTTACCTGATGATGACTACTGTCCTCGAAGTAAGAAAGCAAACCTAGGCAAGAATGCAAGTGTGAATGCGCACCATGGACCAGCACTAGAAGCTGTGGAGACCACTGTGCCCAAGCAAGGACAAAACTTATGGTTCCTGTGTGACAGTCAGAAGGAATTGGATGAGCTGCTGAGTTGCCTCCATCCTCAGGGAATCAGGGAAAGTCAGCTTAAAGAGAGGCTGGAGAAGAGATACCAAGAAATTACTCATTCTATTTATCTGGCTCGGAAGCCAAATTTGGGTCTAAAATCTTGTGACGGCAACCAGGAGCTCTTAAACTTCCTGAGGAGTGATCTTATTGAAGTGGCAACGAGGCTGCAGAAAGGAGGACTTGGCTACATGGAGGGAACATCTGAGTTTGAGGCCCGGGTCATTTCCTTAGAGAAACTGAAGGATTTTGGTGAATGCGTCATTGCCCTTCAAGCCAGTGTCATAAAGAAATTTCTGCAAGGATTTATGGCGCCTAAGCAGAAGAAGCGGAAACTCCAAAGTGAAGATTCCACAAAGTCCGAGGAAGTAGATGAAGAGAAAAAGATGGTAGAGGAAGCAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTAAGCAGAAGAAGCGGA
60.11
TTTGAGGGCTTCCTGTCTGG
59.6
156
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTAAGCAGAAGAAGCGGA
60.11
TTGAGGGCTTCCTGTCTGGA
60.47
155
PCR template sequence:
ATTTATGGCGCCTAAGCAGAAGAAGCGGAAACTCCAAAGTGAAGATTCCACAAAGTCCGAGGAAGTAGATGAAGAGAAAAAGATGGTAGAGGAAGCAAAGTATATGACTCTCAATCCCTCTACCAAGAGGAGGAATACTGGATCTCCAGACAGGAAGCCCTCAAAGAAACCTAAGAGAGACAGTTCTTCTCTGAGTTCCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-1a-3p(1), mmu-miR-7b-5p(1), mmu-miR-206-3p(1), mmu-let-7b-5p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-335-5p(1), mmu-miR-431-5p(1), mmu-miR-351-5p(1), mmu-miR-382-3p(1), mmu-miR-199b-3p(1), mmu-miR-194-5p(1), mmu-miR-199a-3p(1), mmu-miR-377-3p(1), mmu-miR-207(1), mmu-miR-673-5p(1), mmu-miR-335-3p(1), mmu-miR-3065-5p(1), mmu-miR-1199-5p(1), mmu-miR-670-5p(1), mmu-miR-1904(1), mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGAGGAAGCAAAGTATATGACTCTCA
siRNA sets
TCATATACTTTGCTTCCTC, AGTCATATACTTTGCTTCC, GTCATATACTTTGCTTCCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBAZ1B_2541_ORF_1
1.1798
0.301340889
1
5079
ORF sequence:
ATGACTCTCAATCCCTCTACCAAGAGGAGGAATACTGGATCTCCAGACAGGAAGCCCTCAAAGAAACCTAAGAGAGACAGTTCTTCTCTGAGTTCCCCACTAAACCCTAAGCTGTGGTGTCATGTGCACTTGGAGAAGTCGTTAAATGGCCCACCACTCAAAGTAAAGAACTCAAAGAATTCCAAGTCTCCGGAAGAACATTTGGAAGGGGTGATGAAAATTATGTCCCCCAACAACAACAAGCTACACAGCTTCCACATTCCTAAGAAAGGCCCAGCCGCCAAGAAGCCAGGGAAGCACAGTGACAAACCTCTGAAGGCCAAGGGCAGAGGCAAAGGCATCCTGAATGGACAGAAGTCCACAGGCAACTCCAAATCACCCAGCAAGTGTGTGAAGACTCCTAAGACCAAAATGAAGCAGATGACTTTGTTGGATATGGCCAAAGGGACTCAGAAGATGACCCGCACCCCACGGAGTTCTGGGGGTGTGCCAAGGTCTTCTGGTAAACCTCACAAACACCTGCCTCCTGCAGCTCTGCATCTGATTGCCTATTACAAAGAAAATAAAGACAAAGAGGACAAGAAGAGTGCTCTGTCCTGTGTTATCTCCAAAACAGCACGTCTCCTCTCCAATGAAGATAGAGCCCGTCTTCCAGAAGAGCTCCGGGCTCTTGTCCAGAAACGCTATGAGCTCCTGGAACATAAAAAGAGGTGGGCCTCTATGTCTGAAGAGCAACGGAAAGAATATTTGAAAAAGAAACGACAGGAGCTAAAGGAGAGGTTGCGGGAAAAAGCCAAAGAACGGAGAGAGAGAGAAATGCTGGAGAGGTTAGAAAAGCAGAAGCGATTTGAGGACCAGGAGTTAGGTGGCAGAAACCTCCCAGCATTCAGGCTGGTAGATACCCCTGAGGGGCTCCCCAACACTCTTTTTGGGGATGTGGCCCTGGTGGTGGAGTTCCTGAGCTGTTACTCTGGGTTGCTCTTGCCCGATGCTCAGTACCCTATCACTGCTGTGTCCCTAATGGAAGCCTTGAGTGCAGATAAAGGTGGTTTTTTGTACTTGAACAGAGTGCTGGTCATCCTGCTACAGACCTTACTTCAGGATGAAATTGCAGAAGACTATGGAGAACTGGGAATGAAGCTGTCAGAAATCCCCCTCACCCTGCATTCTGTCTCAGAGCTGGTCCGGCTCTGCTTGCGCAGGTGTGATGTCCAGGAGGACAGCGAGGGCTCAGAAACAGATGACAATAAAGATTCCACACCATTTGAGGATAATGAGGTGCAAGACGAATTTCTAGAGAAGCTGGAGACATCAGAATTCTTTGAGCTGACCTCAGAGGAGAAGCTACGGATATTGACAGCTCTTTGCCACCGTATCCTCATGACATACTCTGTGCAAGACCACATGGAGACAAGACAGCAGGTGTCTGCAGAGTTGTGGAAGGAGCGGCTTGCTGTGCTGAAGGAGGAGAATGATAAGAAGAGAGCAGAGAAGCAAAAGCGGAAGGAGATGGAAGCCAGAAATAAAGAAAATGGCAAAGAGGAGAATGTGCTAGGCAAAGTGGACAGGAAAAAAGAAATTGTGAAGATTGAACAGCAAGTAGAAGTGGAAGCAGATGACATGATCAGTGCTGTCAAGAGCAGAAGGCTGCTTAGCATGCAAGCTAAGAGGAAGCGGGAAATCCAGGAGAGAGAAACAAAAGTGAGATTGGAACGGGAAGCTGAAGAGGAACGAATGCGGAAACACAAGGCTGCTGCCGAGAAGGCTTTCCAGGAAGGGATTGCCAAGGCAAAACTTGTACTGCGCAGGACACCTATTGGTACAGACCGCAACCATAACAGATACTGGCTCTTCTCAAACGAAGTCCCAGGATTATTCATTGAAAAGGGCTGGGTCCATAATAGCATTGACTACCGGTTTAAGCATCACCGCAAAGACCACAGCAATTTACCTGATGATGACTACTGTCCTCGAAGTAAGAAAGCAAACCTAGGCAAGAATGCAAGTGTGAATGCGCACCATGGACCAGCACTAGAAGCTGTGGAGACCACTGTGCCCAAGCAAGGACAAAACTTATGGTTCCTGTGTGACAGTCAGAAGGAATTGGATGAGCTGCTGAGTTGCCTCCATCCTCAGGGAATCAGGGAAAGTCAGCTTAAAGAGAGGCTGGAGAAGAGATACCAAGAAATTACTCATTCTATTTATCTGGCTCGGAAGCCAAATTTGGGTCTAAAATCTTGTGACGGCAACCAGGAGCTCTTAAACTTCCTGAGGAGTGATCTTATTGAAGTGGCAACGAGGCTGCAGAAAGGAGGACTTGGCTACATGGAGGGAACATCTGAGTTTGAGGCCCGGGTCATTTCCTTAGAGAAACTGAAGGATTTTGGTGAATGCGTCATTGCCCTTCAAGCCAGTGTCATAAAGAAATTTCTGCAAGGATTTATGGCGCCTAAGCAGAAGAAGCGGAAACTCCAAAGTGAAGATTCCACAAAGTCCGAGGAAGTAGATGAAGAGAAAAAGATGGTAGAGGAAGCAAAGTATATGACTCTCAATCCCTCTACCAAGAGGAGGAATACTGGATCTCCAGACAGGAAGCCCTCAAAGAAACCTAAGAGAGACAGTTCTTCTCTGAGTTCCCCACTAAACCCTAAGCTGTGGTGTCATGTGCACTTGGAGAAGTCGTTAAATGGCCCACCACTCAAAGTAAAGAACTCAAAGAATTCCAAGTCTCCGGAAGAACATTTGGAAGGGGTGATGAAAATTATGTCCCCCAACAACAACAAGCTACACAGCTTCCACATTCCTAAGAAAGGCCCAGCCGCCAAGAAGCCAGGGAAGCACAGTGACAAACCTCTGAAGGCCAAGGGCAGAGGCAAAGGCATCCTGAATGGACAGAAGTCCACAGGCAACTCCAAATCACCCAGCAAGTGTGTGAAGACTCCTAAGACCAAAATGAAGCAGATGACTTTGTTGGATATGGCCAAAGGGACTCAGAAGATGACCCGCACCCCACGGAGTTCTGGGGGTGTGCCAAGGTCTTCTGGTAAACCTCACAAACACCTGCCTCCTGCAGCTCTGCATCTGATTGCCTATTACAAAGAAAATAAAGACAAAGAGGACAAGAAGAGTGCTCTGTCCTGTGTTATCTCCAAAACAGCACGTCTCCTCTCCAATGAAGATAGAGCCCGTCTTCCAGAAGAGCTCCGGGCTCTTGTCCAGAAACGCTATGAGCTCCTGGAACATAAAAAGAGGTGGGCCTCTATGTCTGAAGAGCAACGGAAAGAATATTTGAAAAAGAAACGACAGGAGCTAAAGGAGAGGTTGCGGGAAAAAGCCAAAGAACGGAGAGAGAGAGAAATGCTGGAGAGGTTAGAAAAGCAGAAGCGATTTGAGGACCAGGAGTTAGGTGGCAGAAACCTCCCAGCATTCAGGCTGGTAGATACCCCTGAGGGGCTCCCCAACACTCTTTTTGGGGATGTGGCCCTGGTGGTGGAGTTCCTGAGCTGTTACTCTGGGTTGCTCTTGCCCGATGCTCAGTACCCTATCACTGCTGTGTCCCTAATGGAAGCCTTGAGTGCAGATAAAGGTGGTTTTTTGTACTTGAACAGAGTGCTGGTCATCCTGCTACAGACCTTACTTCAGGATGAAATTGCAGAAGACTATGGAGAACTGGGAATGAAGCTGTCAGAAATCCCCCTCACCCTGCATTCTGTCTCAGAGCTGGTCCGGCTCTGCTTGCGCAGGTGTGATGTCCAGGAGGACAGCGAGGGCTCAGAAACAGATGACAATAAAGATTCCACACCATTTGAGGATAATGAGGTGCAAGACGAATTTCTAGAGAAGCTGGAGACATCAGAATTCTTTGAGCTGACCTCAGAGGAGAAGCTACGGATATTGACAGCTCTTTGCCACCGTATCCTCATGACATACTCTGTGCAAGACCACATGGAGACAAGACAGCAGGTGTCTGCAGAGTTGTGGAAGGAGCGGCTTGCTGTGCTGAAGGAGGAGAATGATAAGAAGAGAGCAGAGAAGCAAAAGCGGAAGGAGATGGAAGCCAGAAATAAAGAAAATGGCAAAGAGGAGAATGTGCTAGGCAAAGTGGACAGGAAAAAAGAAATTGTGAAGATTGAACAGCAAGTAGAAGTGGAAGCAGATGACATGATCAGTGCTGTCAAGAGCAGAAGGCTGCTTAGCATGCAAGCTAAGAGGAAGCGGGAAATCCAGGAGAGAGAAACAAAAGTGAGATTGGAACGGGAAGCTGAAGAGGAACGAATGCGGAAACACAAGGCTGCTGCCGAGAAGGCTTTCCAGGAAGGGATTGCCAAGGCAAAACTTGTACTGCGCAGGACACCTATTGGTACAGACCGCAACCATAACAGATACTGGCTCTTCTCAAACGAAGTCCCAGGATTATTCATTGAAAAGGGCTGGGTCCATAATAGCATTGACTACCGGTTTAAGCATCACCGCAAAGACCACAGCAATTTACCTGATGATGACTACTGTCCTCGAAGTAAGAAAGCAAACCTAGGCAAGAATGCAAGTGTGAATGCGCACCATGGACCAGCACTAGAAGCTGTGGAGACCACTGTGCCCAAGCAAGGACAAAACTTATGGTTCCTGTGTGACAGTCAGAAGGAATTGGATGAGCTGCTGAGTTGCCTCCATCCTCAGGGAATCAGGGAAAGTCAGCTTAAAGAGAGGCTGGAGAAGAGATACCAAGAAATTACTCATTCTATTTATCTGGCTCGGAAGCCAAATTTGGGTCTAAAATCTTGTGACGGCAACCAGGAGCTCTTAAACTTCCTGAGGAGTGATCTTATTGAAGTGGCAACGAGGCTGCAGAAAGGAGGACTTGGCTACATGGAGGGAACATCTGAGTTTGAGGCCCGGGTCATTTCCTTAGAGAAACTGAAGGATTTTGGTGAATGCGTCATTGCCCTTCAAGCCAGTGTCATAAAGAAATTTCTGCAAGGATTTATGGCGCCTAAGCAGAAGAAGCGGAAACTCCAAAGTGAAGATTCCACAAAGTCCGAGGAAGTAGATGAAGAGAAAAAGATGGTAGAGGAAGCAAAG
Peptide sequence:
MTLNPSTKRRNTGSPDRKPSKKPKRDSSSLSSPLNPKLWCHVHLEKSLNGPPLKVKNSKNSKSPEEHLEGVMKIMSPNNNKLHSFHIPKKGPAAKKPGKHSDKPLKAKGRGKGILNGQKSTGNSKSPSKCVKTPKTKMKQMTLLDMAKGTQKMTRTPRSSGGVPRSSGKPHKHLPPAALHLIAYYKENKDKEDKKSALSCVISKTARLLSNEDRARLPEELRALVQKRYELLEHKKRWASMSEEQRKEYLKKKRQELKERLREKAKERREREMLERLEKQKRFEDQELGGRNLPAFRLVDTPEGLPNTLFGDVALVVEFLSCYSGLLLPDAQYPITAVSLMEALSADKGGFLYLNRVLVILLQTLLQDEIAEDYGELGMKLSEIPLTLHSVSELVRLCLRRCDVQEDSEGSETDDNKDSTPFEDNEVQDEFLEKLETSEFFELTSEEKLRILTALCHRILMTYSVQDHMETRQQVSAELWKERLAVLKEENDKKRAEKQKRKEMEARNKENGKEENVLGKVDRKKEIVKIEQQVEVEADDMISAVKSRRLLSMQAKRKREIQERETKVRLEREAEEERMRKHKAAAEKAFQEGIAKAKLVLRRTPIGTDRNHNRYWLFSNEVPGLFIEKGWVHNSIDYRFKHHRKDHSNLPDDDYCPRSKKANLGKNASVNAHHGPALEAVETTVPKQGQNLWFLCDSQKELDELLSCLHPQGIRESQLKERLEKRYQEITHSIYLARKPNLGLKSCDGNQELLNFLRSDLIEVATRLQKGGLGYMEGTSEFEARVISLEKLKDFGECVIALQASVIKKFLQGFMAPKQKKRKLQSEDSTKSEEVDEEKKMVEEAKYMTLNPSTKRRNTGSPDRKPSKKPKRDSSSLSSPLNPKLWCHVHLEKSLNGPPLKVKNSKNSKSPEEHLEGVMKIMSPNNNKLHSFHIPKKGPAAKKPGKHSDKPLKAKGRGKGILNGQKSTGNSKSPSKCVKTPKTKMKQMTLLDMAKGTQKMTRTPRSSGGVPRSSGKPHKHLPPAALHLIAYYKENKDKEDKKSALSCVISKTARLLSNEDRARLPEELRALVQKRYELLEHKKRWASMSEEQRKEYLKKKRQELKERLREKAKERREREMLERLEKQKRFEDQELGGRNLPAFRLVDTPEGLPNTLFGDVALVVEFLSCYSGLLLPDAQYPITAVSLMEALSADKGGFLYLNRVLVILLQTLLQDEIAEDYGELGMKLSEIPLTLHSVSELVRLCLRRCDVQEDSEGSETDDNKDSTPFEDNEVQDEFLEKLETSEFFELTSEEKLRILTALCHRILMTYSVQDHMETRQQVSAELWKERLAVLKEENDKKRAEKQKRKEMEARNKENGKEENVLGKVDRKKEIVKIEQQVEVEADDMISAVKSRRLLSMQAKRKREIQERETKVRLEREAEEERMRKHKAAAEKAFQEGIAKAKLVLRRTPIGTDRNHNRYWLFSNEVPGLFIEKGWVHNSIDYRFKHHRKDHSNLPDDDYCPRSKKANLGKNASVNAHHGPALEAVETTVPKQGQNLWFLCDSQKELDELLSCLHPQGIRESQLKERLEKRYQEITHSIYLARKPNLGLKSCDGNQELLNFLRSDLIEVATRLQKGGLGYMEGTSEFEARVISLEKLKDFGECVIALQASVIKKFLQGFMAPKQKKRKLQSEDSTKSEEVDEEKKMVEEAK
IRESfinder result
IRESfinder score
0.36861744
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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