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mmu_circBanp_943
Basic information of circular RNA
PanCircBase ID:
mmu_circBanp_943
mm39_Chr. Position ID:
chr8|122716693|122734530|+
Gene name:
Banp
Transcript:
ENSMUST00000170857.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
5,6,7,8,9,10,11
Exon/intron offsets:
0,1573,7085,11009,15597,17136,17798
Genomic length:
17837
Exon/intron sizes in nt:
117,176,240,168,131,72,39
Flanking exon/introns:
chr8:122705493-122716693|chr8:122734530-122747257
Splice length:
943
Other database IDs:
CIRCpedia: MMU_CIRCpedia_40241, circAtlas: mmu-Banp_0001
circBase: hsa_circ_0003098, circAtlas: hsa-BANP_0001, CIRCpedia: HSA_CIRCpedia_19019
Human Ortholog IDs:
Mature spliced Sequence:
CGTCGTCCCCCAGACTACAGTAATACTCAACAATGATCGGCAGAACGCCATTGTAGCCAAGATGGAAGACCCATTGAGCAACAGGGCACCGGATTCCCTGGAAAATATCATTAGCAACGCTGTTCCTGGGCGTCGGCAGAACACCATCGTGGTGAAAGTGCCTGGTCAGGACGACAGCCACAACGAAGATGGGGAGAGCGGGTCAGAGGCCAGTGACTCCGTGTCTAACTGTGGCCAGCCAGGAAGCCAGAACATTGGAAGCAACGTCACACTCATCACCCTGAACTCCGAAGAGGACTATCCCAATGGCACCTGGCTGGGCGATGAGAATAACCCTGAGATGCGGGTACGCTGTGCCATCATCCCTTCCGACATGTTGCACATCAGCACCAACTGTCGCACGGCCGAGAAGATGGCGCTGACACTGCTGGACTACCTGTTCCACCGTGAGGTGCAGGCTGTGTCCAACTTGTCCGGCCAGGGCAAGCACGGGAAGAAGCAGCTGGACCCCCTCACCATCTACGGCATCCGGTGTCACCTCTTCTATAAATTTGGAATCACGGAATCTGACTGGTATCGGATCAAGCAGAGCATTGACTCCAAGTGCCGGACAGCCTGGCGGCGGAAGCAGCGAGGCCAGAGCCTGGCGGTCAAGAGCTTCTCTCGGAGGACGCCATCCTCATCCTCTTACAGTGCCTCAGAGACCATGATGGGAACCCCTCCTCCCACCAGTGAGCTACAGCAGTCACAGCCACAGGCCCTACACTACGCCCTGGCCAACGCCCAGCAGGTCCAGATCCACCAGATTGGGGAGGATGGACAGGTGCAAGTAATCCCACAGGGCCACCTCCACATTGCCCAGGTGCCTCAAGGGGAGCAGGTGCAGATCACACAGGACAGCGAGGGCAATCTGCAGATCCATCATGTGGGTCAGGATGGCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGATCACACAGGACAGCGA
59.76
CCCTGTTGCTCAATGGGTCT
59.96
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCAGATCACACAGGACAGC
60.32
CCCTGTTGCTCAATGGGTCT
59.96
148
PCR template sequence:
CCACCTCCACATTGCCCAGGTGCCTCAAGGGGAGCAGGTGCAGATCACACAGGACAGCGAGGGCAATCTGCAGATCCATCATGTGGGTCAGGATGGCCAGCGTCGTCCCCCAGACTACAGTAATACTCAACAATGATCGGCAGAACGCCATTGTAGCCAAGATGGAAGACCCATTGAGCAACAGGGCACCGGATTCCCTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-199a-5p(1), mmu-miR-196a-5p(1), mmu-miR-128-3p(1), mmu-miR-370-3p(1), mmu-miR-705(1), mmu-miR-484(1), mmu-miR-188-3p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCAGGATGGCCAGCGTCGTCCCCCAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBANP_943_ORF_1
1.2109
0.512755113
0.997552919
963
ORF sequence:
ATGTGGGTCAGGATGGCCAGCGTCGTCCCCCAGACTACAGTAATACTCAACAATGATCGGCAGAACGCCATTGTAGCCAAGATGGAAGACCCATTGAGCAACAGGGCACCGGATTCCCTGGAAAATATCATTAGCAACGCTGTTCCTGGGCGTCGGCAGAACACCATCGTGGTGAAAGTGCCTGGTCAGGACGACAGCCACAACGAAGATGGGGAGAGCGGGTCAGAGGCCAGTGACTCCGTGTCTAACTGTGGCCAGCCAGGAAGCCAGAACATTGGAAGCAACGTCACACTCATCACCCTGAACTCCGAAGAGGACTATCCCAATGGCACCTGGCTGGGCGATGAGAATAACCCTGAGATGCGGGTACGCTGTGCCATCATCCCTTCCGACATGTTGCACATCAGCACCAACTGTCGCACGGCCGAGAAGATGGCGCTGACACTGCTGGACTACCTGTTCCACCGTGAGGTGCAGGCTGTGTCCAACTTGTCCGGCCAGGGCAAGCACGGGAAGAAGCAGCTGGACCCCCTCACCATCTACGGCATCCGGTGTCACCTCTTCTATAAATTTGGAATCACGGAATCTGACTGGTATCGGATCAAGCAGAGCATTGACTCCAAGTGCCGGACAGCCTGGCGGCGGAAGCAGCGAGGCCAGAGCCTGGCGGTCAAGAGCTTCTCTCGGAGGACGCCATCCTCATCCTCTTACAGTGCCTCAGAGACCATGATGGGAACCCCTCCTCCCACCAGTGAGCTACAGCAGTCACAGCCACAGGCCCTACACTACGCCCTGGCCAACGCCCAGCAGGTCCAGATCCACCAGATTGGGGAGGATGGACAGGTGCAAGTAATCCCACAGGGCCACCTCCACATTGCCCAGGTGCCTCAAGGGGAGCAGGTGCAGATCACACAGGACAGCGAGGGCAATCTGCAGATCCATCATGTGGGTCAGGATGGCCAG
Peptide sequence:
MWVRMASVVPQTTVILNNDRQNAIVAKMEDPLSNRAPDSLENIISNAVPGRRQNTIVVKVPGQDDSHNEDGESGSEASDSVSNCGQPGSQNIGSNVTLITLNSEEDYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLSGQGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPSSSSYSASETMMGTPPPTSELQQSQPQALHYALANAQQVQIHQIGEDGQVQVIPQGHLHIAQVPQGEQVQITQDSEGNLQIHHVGQDGQ
IRESfinder result
IRESfinder score
0.237006355
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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