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mmu_circAtp8b1_1451
Basic information of circular RNA
PanCircBase ID:
mmu_circAtp8b1_1451
mm39_Chr. Position ID:
chr18|64697413|64738471|-
Gene name:
Atp8b1
Transcript:
ENSMUST00000025482.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
12
Exon/intron indexes:
13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,3723,6674,7040,7316,8896,9144,13068,13245,14750,17558,40855
Genomic length:
41058
Exon/intron sizes in nt:
20,91,91,89,15,98,37,10,00,00,00,00,00,000
Flanking exon/introns:
chr18:64695284-64697413|chr18:64738471-64793770
Splice length:
1451
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGTTCCAATTTGCCAGCAGAATGAGCACAGAAAGAGACTCGGAAACAACATTTGATGAGGAGTCTCAGCCCAACGATGAAGTGGTCCCCTACAGTGATGATGAAACTGAAGACGAACTTGAAGATCAGGGGTCCACGGTTGAACCAGAACAGAATCGTGTCAACAGAGAAGCTGAGAAGAAGAGAGAGACATTCCGGAAAGATTGCACGTGGCAAGTCAAAGCAAATGACCGAAAGTTCCACGAACAACCTCATTTCATGAACACCAAGTTCTTTTGTATTAAGGAGAGCAAATATGCGAGTAATGCAATTAAAACATACAAGTACAATGGATTTACCTTTCTACCCATGAATTTGTTTGAGCAGTTTAAGAGGGCAGCCAACTTCTATTTCCTCATCCTCCTGATCCTGCAGGCAATTCCTCAAATCTCCACCCTGGCATGGTATACCACACTTGTACCTCTGCTTTTGGTGCTGGGCATCACGGCCATCAAAGACCTGGTAGATGATGTGGCTCGTCATAAAATGGACAAGGAAATCAACAATAGGACGTGTGAAGTCATTAAGGATGGCAGGTTCAAAATCATCAAGTGGAAAGATATCCAGGTTGGAGATGTCATCCGCCTGAAGAAGAATGATTTTATTCCAGCTGACATCCTGCTGTTGTCCAGTTCAGAGCCTAACAGCCTCTGCTATGTAGAAACGGCTGAGCTCGACGGAGAAACCAATTTGAAGTTCAAAATGGCCCTGGAAATCACGGACCAATATCTCCAAATAGAAGATAACTTGGCAACATTTGATGGTTTCATCGAATGTGAAGAACCAAACAATCGGTTAGACAAGTTCACAGGAACGCTGTTTTGGAAGAACCAAAGCTTTCCTTTGGATGCTGATAAAATCCTGTTACGAGGTTGTGTGATAAGGAACACCGATGTCTGCCATGGCCTGGTCATTTTTGCAGGTGCTGACACAAAGATAATGAAGAATAGTGGGAAAACCAGATTTAAAAGAACCAAAATTGATTACTTGATGAACTACATGGTGTACACGATCTTTATTGTTCTCATCCTGGTTTCTGCCGGCCTCGCCATTGGCCACGCCTATTGGGAAGCCCAAGTTGGCAATTATTCCTGGTACCTCTATGATGGAGAAAATGCCACACCGTCCTACCGGGGATTCCTGAATTTCTGGGGCTACATCATTGTATTGAACACCATGGTGCCCATTTCTCTCTATGTCAGTGTGGAAGTGATCCGTCTGGGACAGAGTCATTTCATCAACTGGGACCTGCAGATGTACTATGCTGAGAAGGACACTCCTGCCAAGGCGAGGACCACCACCTTGAATGAGCAGCTAGGGCAGATTCATTACATCTTCTCTGATAAGACGGGGACACTCACGCAAAATATCATGACCTTCAAAAAGTGCTGCATTAACGGGACTATCTATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATAAGACGGGGACACTCACG
59.18
CCACTTCATCGTTGGGCTGA
60.32
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATAAGACGGGGACACTCACG
59.18
GACCACTTCATCGTTGGGCT
60.32
157
PCR template sequence:
CAGCTAGGGCAGATTCATTACATCTTCTCTGATAAGACGGGGACACTCACGCAAAATATCATGACCTTCAAAAAGTGCTGCATTAACGGGACTATCTATGGTAGTTCCAATTTGCCAGCAGAATGAGCACAGAAAGAGACTCGGAAACAACATTTGATGAGGAGTCTCAGCCCAACGATGAAGTGGTCCCCTACAGTGAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-375-3p(1), mmu-miR-221-3p(1), mmu-miR-135a-5p(1), mmu-miR-26a-5p(1), mmu-miR-222-3p(1), mmu-miR-26b-5p(1), mmu-miR-297a-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-5101(1), mmu-miR-539-5p(1), mmu-miR-490-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GGGACTATCTATGGTAGTTCCAATTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATP8B1_1451_ORF_1
1.076
0.296546336
0.99977569
1455
ORF sequence:
ATGAGCACAGAAAGAGACTCGGAAACAACATTTGATGAGGAGTCTCAGCCCAACGATGAAGTGGTCCCCTACAGTGATGATGAAACTGAAGACGAACTTGAAGATCAGGGGTCCACGGTTGAACCAGAACAGAATCGTGTCAACAGAGAAGCTGAGAAGAAGAGAGAGACATTCCGGAAAGATTGCACGTGGCAAGTCAAAGCAAATGACCGAAAGTTCCACGAACAACCTCATTTCATGAACACCAAGTTCTTTTGTATTAAGGAGAGCAAATATGCGAGTAATGCAATTAAAACATACAAGTACAATGGATTTACCTTTCTACCCATGAATTTGTTTGAGCAGTTTAAGAGGGCAGCCAACTTCTATTTCCTCATCCTCCTGATCCTGCAGGCAATTCCTCAAATCTCCACCCTGGCATGGTATACCACACTTGTACCTCTGCTTTTGGTGCTGGGCATCACGGCCATCAAAGACCTGGTAGATGATGTGGCTCGTCATAAAATGGACAAGGAAATCAACAATAGGACGTGTGAAGTCATTAAGGATGGCAGGTTCAAAATCATCAAGTGGAAAGATATCCAGGTTGGAGATGTCATCCGCCTGAAGAAGAATGATTTTATTCCAGCTGACATCCTGCTGTTGTCCAGTTCAGAGCCTAACAGCCTCTGCTATGTAGAAACGGCTGAGCTCGACGGAGAAACCAATTTGAAGTTCAAAATGGCCCTGGAAATCACGGACCAATATCTCCAAATAGAAGATAACTTGGCAACATTTGATGGTTTCATCGAATGTGAAGAACCAAACAATCGGTTAGACAAGTTCACAGGAACGCTGTTTTGGAAGAACCAAAGCTTTCCTTTGGATGCTGATAAAATCCTGTTACGAGGTTGTGTGATAAGGAACACCGATGTCTGCCATGGCCTGGTCATTTTTGCAGGTGCTGACACAAAGATAATGAAGAATAGTGGGAAAACCAGATTTAAAAGAACCAAAATTGATTACTTGATGAACTACATGGTGTACACGATCTTTATTGTTCTCATCCTGGTTTCTGCCGGCCTCGCCATTGGCCACGCCTATTGGGAAGCCCAAGTTGGCAATTATTCCTGGTACCTCTATGATGGAGAAAATGCCACACCGTCCTACCGGGGATTCCTGAATTTCTGGGGCTACATCATTGTATTGAACACCATGGTGCCCATTTCTCTCTATGTCAGTGTGGAAGTGATCCGTCTGGGACAGAGTCATTTCATCAACTGGGACCTGCAGATGTACTATGCTGAGAAGGACACTCCTGCCAAGGCGAGGACCACCACCTTGAATGAGCAGCTAGGGCAGATTCATTACATCTTCTCTGATAAGACGGGGACACTCACGCAAAATATCATGACCTTCAAAAAGTGCTGCATTAACGGGACTATCTATGGTAGTTCCAATTTGCCAGCAGAATGA
Peptide sequence:
MSTERDSETTFDEESQPNDEVVPYSDDETEDELEDQGSTVEPEQNRVNREAEKKRETFRKDCTWQVKANDRKFHEQPHFMNTKFFCIKESKYASNAIKTYKYNGFTFLPMNLFEQFKRAANFYFLILLILQAIPQISTLAWYTTLVPLLLVLGITAIKDLVDDVARHKMDKEINNRTCEVIKDGRFKIIKWKDIQVGDVIRLKKNDFIPADILLLSSSEPNSLCYVETAELDGETNLKFKMALEITDQYLQIEDNLATFDGFIECEEPNNRLDKFTGTLFWKNQSFPLDADKILLRGCVIRNTDVCHGLVIFAGADTKIMKNSGKTRFKRTKIDYLMNYMVYTIFIVLILVSAGLAIGHAYWEAQVGNYSWYLYDGENATPSYRGFLNFWGYIIVLNTMVPISLYVSVEVIRLGQSHFINWDLQMYYAEKDTPAKARTTTLNEQLGQIHYIFSDKTGTLTQNIMTFKKCCINGTIYGSSNLPAE
IRESfinder result
IRESfinder score
0.539014521
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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