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mmu_circAtp6v1h_654
Basic information of circular RNA
PanCircBase ID:
mmu_circAtp6v1h_654
mm39_Chr. Position ID:
chr1|5163585|5194692|+
Gene name:
Atp6v1h
Transcript:
ENSMUST00000192847.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
4,5,6,7,8,9
Exon/intron offsets:
0,2252,4666,7707,24027,30914
Genomic length:
31107
Exon/intron sizes in nt:
90,11,41,05,54,98,193
Flanking exon/introns:
chr1:5159334-5163585|chr1:5194692-5203306
Splice length:
654
Other database IDs:
circAtlas: mmu-Atp6v1h_0012
circBase: hsa_circ_0136761, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_61354
Human Ortholog IDs:
Mature spliced Sequence:
TGTGCTAAAACATTTATAAATCTGATGACGCACATCTCCAAAGAACAGACAGTGCAGTACATACTAACCATGGTTGACGATATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCGAAACGAAGCAAGAGCACTGCCTGGCCATACTTCCTGCCAATGTTGAATCGCCAGGATCCCTTTACTGTTCATATGGCAGCAAGAATTATCGCCAAGTTAGCTGCTTGGGGGAAAGAACTGATGGAAGGCAGTGACTTAAATTACTATTTCAATTGGATAAAAACTCAGCTGAGTTCACAGAAACTTCGTGGCAGCGGTGTTGCTGTTGAAACAGGAACAATCTCTTCAAGTGATAGTTCTCAGTATGTGCAGTGTGTTGCTGGCTGTCTGCAGCTGATGCTCCGGGTCAATGAGTACCGGTTTGCCTGGGTAGAAGCAGATGGAGTGAACTGTATAATGGGCGTTTTGAGTAACAAGTGTGGTTTTCAACTTCAATACCAAATGATTTTTTCAATATGGCTCCTGGCATTCAGTCCTCAAATGTGTGAGCACCTTCGTCGCTATAATATCATTCCTGTTCTATCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAACAAGAATCATTCTTGCAGCATTCCGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGCACCTTCGTCGCTATA
58.61
ACTGCACTGTCTGTTCTTTGGA
60.09
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGCACCTTCGTCGCTATA
58.61
GTTCTTTGGAGATGTGCGTCA
58.86
146
PCR template sequence:
TGAGCACCTTCGTCGCTATAATATCATTCCTGTTCTATCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAACAAGAATCATTCTTGCAGCATTCCGGTGTGCTAAAACATTTATAAATCTGATGACGCACATCTCCAAAGAACAGACAGTGCAGTACATACTAACCATGGTTGACGATATGCTGCAGGAAAATCACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-106b-5p(1), mmu-miR-153-3p(1), mmu-miR-34b-5p(1), mmu-miR-224-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCAGCATTCCGGTGTGCTAAAACAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATP6V1H_654_ORF_1
0.7191
0.117926691
0.997015933
1284
ORF sequence:
ATGACGCACATCTCCAAAGAACAGACAGTGCAGTACATACTAACCATGGTTGACGATATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCGAAACGAAGCAAGAGCACTGCCTGGCCATACTTCCTGCCAATGTTGAATCGCCAGGATCCCTTTACTGTTCATATGGCAGCAAGAATTATCGCCAAGTTAGCTGCTTGGGGGAAAGAACTGATGGAAGGCAGTGACTTAAATTACTATTTCAATTGGATAAAAACTCAGCTGAGTTCACAGAAACTTCGTGGCAGCGGTGTTGCTGTTGAAACAGGAACAATCTCTTCAAGTGATAGTTCTCAGTATGTGCAGTGTGTTGCTGGCTGTCTGCAGCTGATGCTCCGGGTCAATGAGTACCGGTTTGCCTGGGTAGAAGCAGATGGAGTGAACTGTATAATGGGCGTTTTGAGTAACAAGTGTGGTTTTCAACTTCAATACCAAATGATTTTTTCAATATGGCTCCTGGCATTCAGTCCTCAAATGTGTGAGCACCTTCGTCGCTATAATATCATTCCTGTTCTATCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAACAAGAATCATTCTTGCAGCATTCCGGTGTGCTAAAACATTTATAAATCTGATGACGCACATCTCCAAAGAACAGACAGTGCAGTACATACTAACCATGGTTGACGATATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCGAAACGAAGCAAGAGCACTGCCTGGCCATACTTCCTGCCAATGTTGAATCGCCAGGATCCCTTTACTGTTCATATGGCAGCAAGAATTATCGCCAAGTTAGCTGCTTGGGGGAAAGAACTGATGGAAGGCAGTGACTTAAATTACTATTTCAATTGGATAAAAACTCAGCTGAGTTCACAGAAACTTCGTGGCAGCGGTGTTGCTGTTGAAACAGGAACAATCTCTTCAAGTGATAGTTCTCAGTATGTGCAGTGTGTTGCTGGCTGTCTGCAGCTGATGCTCCGGGTCAATGAGTACCGGTTTGCCTGGGTAGAAGCAGATGGAGTGAACTGTATAATGGGCGTTTTGAGTAACAAGTGTGGTTTTCAACTTCAATACCAAATGATTTTTTCAATATGGCTCCTGGCATTCAGTCCTCAAATGTGTGAGCACCTTCGTCGCTATAATATCATTCCTGTTCTATCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAACAAGAATCATTCTTGCAGCATTCCGG
Peptide sequence:
MTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVAVETGTISSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVAVETGTISSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFR
IRESfinder result
IRESfinder score
0.656184075
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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