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mmu_circAtp6v1b2_791
Basic information of circular RNA
PanCircBase ID:
mmu_circAtp6v1b2_791
mm39_Chr. Position ID:
chr8|69548871|69556420|+
Gene name:
Atp6v1b2
Transcript:
ENSMUST00000006435.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
2,3,4,5,6,7,8,9
Exon/intron offsets:
0,5145,5716,5944,6231,6542,7160,7425
Genomic length:
7549
Exon/intron sizes in nt:
56,99,94,78,14,01,02,90,000
Flanking exon/introns:
chr8:69541580-69548871|chr8:69556420-69558460
Splice length:
791
Other database IDs:
circAtlas: hsa-ATP6V1B2_0012
Human Ortholog IDs:
Mature spliced Sequence:
CCTACAAGACTGTCTCTGGGGTGAATGGTCCACTAGTGATCCTAGATCATGTGAAGTTTCCCAGATACGCTGAGATTGTCCACTTGACATTACCAGATGGCACAAAGAGAAGTGGGCAAGTCCTAGAAGTTAGTGGCTCCAAAGCAGTGGTTCAGGTATTTGAAGGGACATCTGGTATAGACGCCAAGAAAACATCCTGTGAGTTTACTGGAGATATTCTCCGAACACCAGTGTCTGAGGATATGCTTGGTCGAGTATTCAACGGATCAGGAAAACCCATTGACCGAGGCCCTGTGGTGCTGGCTGAAGACTTCCTTGACATCATGGGTCAGCCAATCAACCCTCAGTGTCGGATCTATCCAGAAGAGATGATTCAGACGGGCATTTCCGCCATCGATGGCATGAACAGTATTGCTAGGGGACAGAAAATCCCCATCTTTTCTGCTGCTGGATTACCACACAACGAGATTGCAGCTCAGATCTGTCGCCAGGCTGGTTTGGTAAAGAAATCCAAAGATGTAGTGGACTATAGTGAAGAAAATTTTGCCATTGTGTTTGCTGCTATGGGAGTAAACATGGAAACAGCCCGGTTCTTTAAATCTGACTTTGAAGAAAATGGCTCAATGGACAATGTCTGCCTTTTTTTGAATCTGGCTAATGACCCAACCATTGAGCGGATCATCACTCCTCGCCTGGCTCTGACCACGGCCGAGTTTCTGGCATATCAGTGTGAGAAGCACGTGCTGGTGATCCTGACGGACATGAGCTCCTACGCTGAAGCGCTGCGAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CACGTGCTGGTGATCCTGAC
61.02
TCAAGTGGACAATCTCAGCGT
59.66
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CACGTGCTGGTGATCCTGA
59.71
TCAAGTGGACAATCTCAGCGT
59.66
141
PCR template sequence:
CCTGGCTCTGACCACGGCCGAGTTTCTGGCATATCAGTGTGAGAAGCACGTGCTGGTGATCCTGACGGACATGAGCTCCTACGCTGAAGCGCTGCGAGAGCCTACAAGACTGTCTCTGGGGTGAATGGTCCACTAGTGATCCTAGATCATGTGAAGTTTCCCAGATACGCTGAGATTGTCCACTTGACATTACCAGATGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-16-5p(2), mmu-miR-15a-5p(2), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-200c-3p(1), mmu-miR-15b-5p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-216a-5p(1), mmu-miR-342-3p(1), mmu-miR-335-3p(1), mmu-miR-3087-3p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGCGCTGCGAGAGCCTACAAGACTGT
siRNA sets
TCTTGTAGGCTCTCGCAGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATP6V1B2_791_ORF_1
1.1419
0.353791346
0.918706205
573
ORF sequence:
ATGCTTGGTCGAGTATTCAACGGATCAGGAAAACCCATTGACCGAGGCCCTGTGGTGCTGGCTGAAGACTTCCTTGACATCATGGGTCAGCCAATCAACCCTCAGTGTCGGATCTATCCAGAAGAGATGATTCAGACGGGCATTTCCGCCATCGATGGCATGAACAGTATTGCTAGGGGACAGAAAATCCCCATCTTTTCTGCTGCTGGATTACCACACAACGAGATTGCAGCTCAGATCTGTCGCCAGGCTGGTTTGGTAAAGAAATCCAAAGATGTAGTGGACTATAGTGAAGAAAATTTTGCCATTGTGTTTGCTGCTATGGGAGTAAACATGGAAACAGCCCGGTTCTTTAAATCTGACTTTGAAGAAAATGGCTCAATGGACAATGTCTGCCTTTTTTTGAATCTGGCTAATGACCCAACCATTGAGCGGATCATCACTCCTCGCCTGGCTCTGACCACGGCCGAGTTTCTGGCATATCAGTGTGAGAAGCACGTGCTGGTGATCCTGACGGACATGAGCTCCTACGCTGAAGCGCTGCGAGAGCCTACAAGACTGTCTCTGGGGTGA
Peptide sequence:
MLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREPTRLSLG
IRESfinder result
IRESfinder score
0.547864618
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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