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mmu_circAtg3_50
Basic information of circular RNA
PanCircBase ID:
mmu_circAtg3_50
mm39_Chr. Position ID:
chr16|44995611|44995661|+
Gene name:
Atg3
Transcript:
ENSMUST00000023343.4
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
50
Exon/intron sizes in nt:
50
Flanking exon/introns:
chr16:44992116-44995611|chr16:44995661-44998592
Splice length:
50
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATTACAGGAATTACTGAAGCAGTTAAGGAGATTACACTGGAAAGCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
TAAGGAGATTACACTGGAAAGCAAGGTATTACAGGAATTACTGAAGCAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ACTGGAAAGCAAGGTATTACAGGAAT
siRNA sets
ATTCCTGTAATACCTTGCT, TAATACCTTGCTTTCCAGT, TTCCTGTAATACCTTGCTT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.627826758
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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