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Database for pancreatic islet circular RNAs
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mmu_circAtf2_762
Basic information of circular RNA
PanCircBase ID:
mmu_circAtf2_762
mm39_Chr. Position ID:
chr2|73672703|73701029|-
Gene name:
Atf2
Transcript:
ENSMUST00000112007.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
10,9,8,7,6,5,4
Exon/intron offsets:
0,3079,3837,8229,8504,20809,28263
Genomic length:
28326
Exon/intron sizes in nt:
87,115,179,129,119,70,63
Flanking exon/introns:
chr2:73660285-73672703|chr2:73701029-73704013
Splice length:
762
Other database IDs:
circAtlas: mmu-Atf2_0036
Human Ortholog IDs:
Mature spliced Sequence:
ATACTGGATTTATGACTTAAAACCTTCCCACAGAGAAAATCCCAGGCTCATATAGCTTCACTGATAAAACACGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGCACTGCCCCTGGGTGTGGCCAGATCAGACTCCAACGCCAACAAGATTCCTAAAAAACTGTGAAGAAGTGGGTTTGTTCAATGAGTTGGCAAGTCCATTTGAAAATGAATTCAAGAAGGCTTCCGAAGATGACATTAAAAAAATGCCTCTAGATTTGTCCCCTCTTGCAACACCCATCATAAGAAGCAAAATTGAGGAGCCTTCTGTTGTAGAAACAACTCACCAGGACAGCCCTTTACCTCACCCCGAGTCGACTACCAGTGATGAAAAGGAAGTACCATTGGCACAAACTGCACAGCCCACATCAGCTATCGTTCGTCCAGCATCATTACAGGTTCCCAATGTGCTGCTCACAAGTTCTGACTCAAGTGTAATTATTCAACAAGCAGTACCTTCACCAACCTCAAGTACTGTAATCACCCAGGCACCATCCTCTAACAGGCCAATTGTTCCTGTACCAGGCCCATTTCCTCTTCTCTTACATCTTCCTAATGGACAAACCATGCCCGTTGCTATTCCTGCATCAATTACAAGTTCTAATGTGCATGTTCCAGCTGCAGTCCCACTTGTTCGGCCAGTCACCATGGTGCCTAGTGTTCCAGGAATCCCAGGCCCTTCCTCTCCTCAACCAGTCCAGTCAGAAGCAAAAATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCTGCAGTCCCACTTGTTC
60.54
AGCCTGGGATTTTCTCTGTGG
59.99
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCTGCAGTCCCACTTGTTC